Publications

Chen, X., Moran Torres, J. P., Li, Y., Lugones, L. G., & Wösten, H. A. B. (2023). Inheritable CRISPR based epigenetic modification in a fungus. Microbiological Research, 272, [127397]. https://doi.org/10.1016/j.micres.2023.127397

Will, I., Linehan, S., Jenkins, D. G., & De bekker, C. (2023). Natural history and ecological effects on the establishment and fate of Florida carpenter ant cadavers infected by the parasitic manipulator Ophiocordyceps camponoti‐floridani. Functional Ecology, 37(4), 886-899. https://doi.org/10.1111/1365-2435.14224

Pérez-Ortega, J., van Harten, R. M., Haagsman, H. P., & Tommassen, J. (2023). Physiological consequences of inactivation of lgmB and lpxL1, two genes involved in lipid A synthesis in Bordetella bronchiseptica. Research in Microbiology, [104049]. https://doi.org/10.1016/j.resmic.2023.104049

Adams, H., van de Garde, E. M. W., Vugts, D. J., Grutters, J. C., Oyen, W. J. G., & Keijsers, R. G. (2023). [89Zr]-immuno-PET prediction of response to rituximab treatment in patients with therapy refractory interstitial pneumonitis: a phase 2 trial. European Journal of Nuclear Medicine and Molecular Imaging. https://doi.org/10.1007/s00259-023-06143-1

Lyu, J., Tegelaar, M., Post, H., Moran Torres, J., Torchia, C., Altelaar, A. F. M., Bleichrodt, R-J., de Cock, H., Lugones, L. G., & Wösten, H. A. B. (2023). Heterogeneity in Spore Aggregation and Germination Results in Different Sized, Cooperative Microcolonies in an Aspergillus niger Culture. mBio, 14(1), 1-20. [e0087022]. https://doi.org/10.1128/mbio.00870-22

Safeer, A., Kleijburg, F., Bahri, S., Beriashvili, D., Veldhuizen, E., van Neer, J., Tegelaar, M., de Cock, H., Wösten, H., & Baldus, M. (2023). Probing Cell-Surface Interactions in Fungal Cell Walls by High-Resolution 1H-detected Solid-State NMR Spectroscopy. Chemistry-A European Journal, 29(1), [e202202616]. https://doi.org/10.1002/chem.202202616

Suiker, I. M., Kleijburg, F. E. L., & Wösten, H. A. B. (2023). Heat resistance acquirement of the spoilage yeast Saccharomyces diastaticus during heat exposure. Journal of Food Protection, 86(1), [100020]. https://doi.org/10.1016/j.jfp.2022.100020

Duca, M., Haksar, D., van Neer, J., Thies-Weesie, D. M. E., Martínez-Alarcón, D., de Cock, H., Varrot, A., & Pieters, R. J. (2022). Multivalent Fucosides Targeting β-Propeller Lectins from Lung Pathogens with Promising Anti-Adhesive Properties. ACS Chemical Biology, 17(12), 3515–3526. https://doi.org/10.1021/acschembio.2c00708

Johns, L. E., Bebber, D. P., Gurr, S. J., & Brown, N. A. (2022). Emerging health threat and cost of Fusarium mycotoxins in European wheat. Nature Food, 3(12), 1014-1019. https://doi.org/10.1038/s43016-022-00655-z

van den Brandhof, J. G., & Wösten, H. A. B. (2022). Risk assessment of fungal materials. Fungal Biology and Biotechnology, 9(1), 1-20. [3]. https://doi.org/10.1186/s40694-022-00134-x

Kilaru, S., Fantozzi, E., Cannon, S., Schuster, M., Chaloner, T. M., Guiu-Aragones, C., Gurr, S. J., & Steinberg, G. (2022). Zymoseptoria tritici white-collar complex integrates light, temperature and plant cues to initiate dimorphism and pathogenesis. Nature Communications, 13(1), [5625]. https://doi.org/10.1038/s41467-022-33183-2

Uruén, C., García, C., Fraile, L., Tommassen, J., & Arenas, J. (2022). How Streptococcus suis escapes antibiotic treatments. Veterinary Research, 53(1), [91]. https://doi.org/10.1186/s13567-022-01111-3

Cannon, S., Kay, W., Kilaru, S., Schuster, M., Gurr, S. J., Steinberg, G., & Thomma, B. (Ed.) (2022). Multi-site fungicides suppress banana Panama disease, caused by Fusarium oxysporum f. sp. cubense Tropical Race 4. PLoS Pathogens, 18(10), 1-37. [e1010860]. https://doi.org/10.1371/journal.ppat.1010860

Lyu, J. (2022). Functionality of heterogeneity in size of Aspergillus niger micro-colonies. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/1447

van den Brule, T. (2022). Heterogeneity in stress resistance of Paecilomyces variotii and related food spoilage fungi. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/1362

Livne, A., Wösten, H. A. B., Pearlmutter, D., & Gal, E. (2022). Fungal Mycelium Bio-Composite Acts as a CO2-Sink Building Material with Low Embodied Energy. ACS Sustainable Chemistry and Engineering, 10(37), 12099-12106. https://doi.org/10.1021/acssuschemeng.2c01314

Herman, K. C., & Bleichrodt, R. (2022). Go with the flow: mechanisms driving water transport during vegetative growth and fruiting. Fungal Biology Reviews, 41, 10-23. https://doi.org/10.1016/j.fbr.2021.10.002

Ijadpanahsaravi, M., Teertstra, W. R., & Wösten, H. A. B. (2022). Inter- and intra-species heterogeneity in germination of Aspergillus conidia. Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology, 115(9), 1151-1164. https://doi.org/10.1007/s10482-022-01762-4

Hauptfeld, E., Pelkmans, J., Huisman, T. T., Anocic, A., Snoek, B. L., von Meijenfeldt, F. A. B., Gerritse, J., van Leeuwen, J., Leurink, G., van Lit, A., van Uffelen, R., Koster, M. C., & Dutilh, B. E. (2022). A metagenomic portrait of the microbial community responsible for two decades of bioremediation of poly-contaminated groundwater. Water Research, 221, 1-10. [118767]. https://doi.org/10.1016/j.watres.2022.118767

Verburg, K., van Neer, J., Duca, M., & de Cock, H. (2022). Novel Treatment Approach for Aspergilloses by Targeting Germination. Journal of Fungi, 8(8), 1-30. [758]. https://doi.org/10.3390/jof8080758

Pérez-Ortega, J., Van boxtel, R., De jonge, E. F., & Tommassen, J. (2022). Regulated Expression of lpxC Allows for Reduction of Endotoxicity in Bordetella pertussis. International Journal of Molecular Sciences, 23(14), 1-14. [8027]. https://doi.org/10.3390/ijms23148027

Seekles, S. J., Punt, M., Savelkoel, N., Houbraken, J., Wösten, H. A. B., Ohm, R. A., & Ram, A. F. J. (2022). Genome sequences of 24 Aspergillus niger sensu stricto strains to study strain diversity, heterokaryon compatibility and sexual reproduction. G3: Genes, Genomes, Genetics, 12(7), 1-15. [jkac124]. https://doi.org/10.1093/g3journal/jkac124

De jonge, E. F., & Tommassen, J. (2022). Conditional growth defect of Bordetella pertussis and Bordetella bronchiseptica ferric uptake regulator (fur) mutants. FEMS Microbiology Letters, 369(1), 1-7. [fnac047]. https://doi.org/10.1093/femsle/fnac047

Bleichrodt, R-J., & Wösten, H. A. B. (2022). Visualising long distance sugar transport in fungi using infrared fluorescence scanning imaging. Fungal Genetics and Biology, 161, 1-7. [103699]. https://doi.org/10.1016/j.fgb.2022.103699

Wei, T. P., Zhang, H., Zeng, X. Y., Crous, P. W., & Jiang, Y. L. (2022). Re-evaluation of Sympoventuriaceae. Persoonia: Molecular Phylogeny and Evolution of Fungi, 48(1), 219-260. https://doi.org/10.3767/persoonia.2022.48.07

Punt, M., Seekles, S. J., van Dam, J. L., de Adelhart Toorop, C., Martina, R. R., Houbraken, J., Ram, A. F. J., Wösten, H. A. B., & Ohm, R. A. (2022). High sorbic acid resistance of Penicillium roqueforti is mediated by the SORBUS gene cluster. PLoS Genetics, 18(6), 1-25. [e1010086]. https://doi.org/10.1371/journal.pgen.1010086

de Jonge, E. F. (2022). Biogenesis of outer-membrane vesicles in Bordetella species. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/1214

van den Brule, T., Punt, M., Seekles, S. J., Segers, F. J. J., Houbraken, J., Hazeleger, W. C., Ram, A. F. J., Wösten, H. A. B., Zwietering, M. H., Dijksterhuis, J., & den Besten, H. M. W. (2022). Intraspecific variability in heat resistance of fungal conidia. Food Research International, 156, 1-9. [111302]. https://doi.org/10.1016/j.foodres.2022.111302

Marian, I. M., Vonk, P. J., Valdes, I. D., Barry, K., Bostock, B., Carver, A., Daum, C., Lerner, H., Lipzen, A., Park, H., Schuller, M. B. P., Tegelaar, M., Tritt, A., Schmutz, J., Grimwood, J., Lugones, L. G., Choi, I-G., Wösten, H. A. B., Grigoriev, I. V., & Ohm, R. A. (2022). The Transcription Factor Roc1 Is a Key Regulator of Cellulose Degradation in the Wood-Decaying Mushroom Schizophyllum commune. mBio, 13(3), 1-19. [e0062822]. https://doi.org/10.1128/mbio.00628-22

Vonk, P. J. (2022). Functional genomics in Schizophyllum commune. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/1035

Buijs, V. A., Groenewald, J. Z., Haridas, S., LaButti, K. M., Lipzen, A., Martin, F. M., Barry, K., Grigoriev, I. V., Crous, P. W., & Seidl, M. F. (2022). Enemy or ally: a genomic approach to elucidate the lifestyle of Phyllosticta citrichinaensis. G3: Genes, Genomes, Genetics, 12(5), 1-13. https://doi.org/10.1093/g3journal/jkac061

de Jonge, E. F., van Boxtel, R., Balhuizen, M. D., Haagsman, H. P., & Tommassen, J. (2022). Pal depletion results in hypervesiculation and affects cell morphology and outer-membrane lipid asymmetry in bordetellae. Research in Microbiology, 173(4-5), 1-13. [103937]. https://doi.org/10.1016/j.resmic.2022.103937

Escobar, N., Keizer, E., Neer, J. V., Arentshorst, M., Strijp, J. V., Haas, P-J., Ram, A., Punt, P., Wosten, H., & Cock, H. D. (2022). LaeA-dependent production of small molecules of Aspergillus niger that compete with specific antibodies that bind to human immune receptors. https://doi.org/10.1101/2022.04.26.489527

Suiker, I. M., & Wösten, H. A. B. (2022). Spoilage yeasts in beer and beer products. Current Opinion in Food Science, 44, 1-7. [100815]. https://doi.org/10.1016/j.cofs.2022.100815

Fisher, M. C., Alastruey-Izquierdo, A., Berman, J., Bicanic, T., Bignell, E. M., Bowyer, P., Bromley, M., Brüggemann, R., Garber, G., Cornely, O. A., Gurr, S. J., Harrison, T. S., Kuijper, E., Rhodes, J., Sheppard, D. C., Warris, A., White, P. L., Xu, J., Zwaan, B., & Verweij, P. E. (2022). Tackling the emerging threat of antifungal resistance to human health. Nature Reviews Microbiology, 20(9), 557-571. https://doi.org/10.1038/s41579-022-00720-1

Chen, Q., Bakhshi, M., Balci, Y., Broders, K. D., Cheewangkoon, R., Chen, S. F., Fan, X. L., Gramaje, D., Halleen, F., Horta jung, M., Jiang, N., Jung, T., Májek, T., Marincowitz, S., Milenković, I., Mostert, L., Nakashima, C., Nurul faziha, I., Pan, M., ... Crous, P. W. (2022). Genera of phytopathogenic fungi: GOPHY 4. Studies in Mycology, 101(1), 417-564. https://doi.org/10.3114/sim.2022.101.06

Braat, N., Koster, M. C., & Wösten, H. A. B. (2022). Beneficial interactions between bacteria and edible mushrooms. Fungal Biology Reviews, 39, 60-72. https://doi.org/10.1016/j.fbr.2021.12.001

Karyotaki, E., Klein, A. M., Ciharova, M., Bolinski, F., Krijnen, L., de Koning, L., de Wit, L., van der Heijde, C. M., Ebert, D. D., Riper, H., Batelaan, N., Vonk, P., Auerbach, R. P., Kessler, R. C., Bruffaerts, R., Struijs, S., Wiers, R. W., & Cuijpers, P. (2022). Guided internet-based transdiagnostic individually tailored Cognitive Behavioral Therapy for symptoms of depression and/or anxiety in college students: A randomized controlled trial. Behaviour Research and Therapy, 150, 1-12. [104028]. https://doi.org/10.1016/j.brat.2021.104028

Foudraine, D. E., Aarents, C. N. M., Wattel, A. A., Van boxtel, R., Strepis, N., Ten kate, M. T., Verbon, A., Luider, T. M., Klaassen, C. H. W., Hays, J., Dekker, L. J. M., Tommassen, J., & Goessens, W. H. F. (2022). Liquid Chromatography-Tandem Mass Spectrometry Analysis Demonstrates a Decrease in Porins and Increase in CMY-2 β-Lactamases in Escherichia coli Exposed to Increasing Concentrations of Meropenem. Frontiers in Microbiology, 13, [793738]. https://doi.org/10.3389/fmicb.2022.793738

Keizer, E. M., Valdes, I. D., McCann, B. L., Bignell, E. M., Wösten, H. A. B., & de Cock, H. (2022). The Protective Role of 1,8-Dihydroxynaphthalene-Melanin on Conidia of the Opportunistic Human Pathogen Aspergillus fumigatus Revisited: No Role in Protection against Hydrogen Peroxide and Superoxides. mSphere, 7(1), 1-11. [e0087421]. https://doi.org/10.1128/msphere.00874-21

Punt, M. (2022). Heterogeneity of food spoilage fungi. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/1010

Adamatzky, A., Ayres, P., Beasley, A. E., Chiolerio, A., Dehshibi, M. M., Gandia, A., Albergati, E., Mayne, R., Nikolaidou, A., Roberts, N., Tegelaar, M., Tsompanas, M-A., Phillips, N., & Wösten, H. A. B. (2022). Fungal electronics. BioSystems, 212, 1-8. [104588]. https://doi.org/10.1016/j.biosystems.2021.104588

Araújo, J. P. M., Lebert, B. M., Vermeulen, S., Brachmann, A., Ohm, R. A., Evans, H. C., & De bekker, C. (2022). Masters of the manipulator: two new hypocrealean genera, Niveomyces (Cordycipitaceae) and Torrubiellomyces (Ophiocordycipitaceae), parasitic on the zombie ant fungus Ophiocordyceps camponoti-floridani. Persoonia: Molecular Phylogeny and Evolution of Fungi, 171-194. https://doi.org/10.3767/persoonia.2022.49.05

Subroto, E., van Neer, J., Valdes, I., & de Cock, H. (2022). Growth of Aspergillus fumigatus in Biofilms in Comparison to Candida albicans. Journal of Fungi, 8(1), 1-23. [48]. https://doi.org/10.3390/jof8010048

De jonge, E. F., Vogrinec, L., Van boxtel, R., & Tommassen, J. (2022). Inactivation of the Mla system and outer-membrane phospholipase A results in disrupted outer-membrane lipid asymmetry and hypervesiculation in Bordetella pertussis. Current Research in Microbial Sciences, 3, [100172]. https://doi.org/10.1016/j.crmicr.2022.100172

Punt, M., Teertstra, W. R., & Wösten, H. A. B. (2022). Penicillium roqueforti conidia induced by L-amino acids can germinate without detectable swelling. Antonie van Leeuwenhoek, 115(1), 103-110. https://doi.org/10.1007/s10482-021-01686-5

Adamatzky, A., Ayres, P., Beasley, A. E., Roberts, N., & Wösten, H. A. B. (2022). Logics in Fungal Mycelium Networks. Logica Universalis, 16, 655–669 . https://doi.org/10.1007/s11787-022-00318-4

van Hespen, R., Hu, Z., Borsje, B., De Dominicis, M., Friess, D. A., Jevrejeva, S., Kleinhans, M. G., Maza, M., van Bijsterveldt, C. E. J., Van der Stocken, T., van Wesenbeeck, B., Xie, D., & Bouma, T. J. (Accepted/In press). Mangrove forests as a nature-based solution for coastal flood protection: Biophysical and ecological considerations. Water Science and Engineering. https://doi.org/10.1016/j.wse.2022.10.004

Ivanova, E. P., Linklater, D. P., Aburto-Medina, A., Le, P., Baulin, V. A., Khuong Duy Nguyen, H., Curtain, R., Hanssen, E., Gervinskas, G., Hock Ng, S., Khanh Truong, V., Luque, P., Ramm, G., Wösten, H. A. B., Crawford, R. J., Juodkazis, S., & Maclaughlin, S. (2021). Antifungal versus antibacterial defence of insect wings. Journal of Colloid and Interface Science, 603, 886-897. https://doi.org/10.1016/j.jcis.2021.06.093

Gandia, A., van den Brandhof, J., Appels, F., & Jones, M. P. (2021). Flexible Fungal Materials: Shaping the Future. Trends in Biotechnology, 39(12), 1321-1331. https://doi.org/10.1016/j.tibtech.2021.03.002

Balhuizen, M. D., Versluis, C. M., Van Harten, R. M., De Jonge, E. F., Brouwers, J. F., Van De Lest, C. H. A., Veldhuizen, E. J. A., Tommassen, J., & Haagsman, H. P. (2021). PMAP-36 reduces the innate immune response induced by Bordetella bronchiseptica-derived outer membrane vesicles. Current Research in Microbial Sciences, 2, [100010]. https://doi.org/10.1016/j.crmicr.2020.100010

Peng, M., Khosravi, C., Lubbers, R. J. M., Kun, R. S., Aguilar Pontes, M. V., Battaglia, E., Chen, C., Dalhuijsen, S., Daly, P., Lipzen, A., Ng, V., Yan, J., Wang, M., Visser, J., Grigoriev, I. V., Mäkelä, M. R., & de Vries, R. P. (2021). CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner. The Cell Surface, 7, 1-11. [100050]. https://doi.org/10.1016/j.tcsw.2021.100050

Vonk, P. J., & Ohm, R. A. (2021). H3K4me2 ChIP-Seq reveals the epigenetic landscape during mushroom formation and novel developmental regulators of Schizophyllum commune. Scientific Reports, 11(1), 1-15. [8178]. https://doi.org/10.1038/s41598-021-87635-8

De Jonge, E. F., Balhuizen, M. D., Van Boxtel, R., Wu, J., Haagsman, H. P., & Tommassen, J. (2021). Heat shock enhances outer-membrane vesicle release in Bordetella spp. Current Research in Microbial Sciences, 2, 1-11. [100009]. https://doi.org/10.1016/j.crmicr.2020.100009

Seekles, S. J., Teunisse, P. P. P., Punt, M., van den Brule, T., Dijksterhuis, J., Houbraken, J., Wösten, H. A. B., & Ram, A. F. J. (2021). Preservation stress resistance of melanin deficient conidia from Paecilomyces variotii and Penicillium roqueforti mutants generated via CRISPR/Cas9 genome editing. Fungal Biology and Biotechnology, 8(1), 1-13. [4]. https://doi.org/10.1186/s40694-021-00111-w

Hu, Z., Borsje, B. W., van Belzen, J., Willemsen, P. W. J. M., Wang, H., Peng, Y., Yuan, L., De Dominicis, M., Wolf, J., Temmerman, S., & Bouma, T. J. (2021). Mechanistic Modeling of Marsh Seedling Establishment Provides a Positive Outlook for Coastal Wetland Restoration Under Global Climate Change. Geophysical Research Letters, 48(22), 1-12. [e2021GL095596]. https://doi.org/10.1029/2021GL095596

Cozzoli, F., Shokri, M., Gomes da Conceição, T., Herman, P. M. J., Hu, Z., Soissons, L. M., Van Dalen, J., Ysebaert, T., & Bouma, T. J. (2021). Modelling spatial and temporal patterns in bioturbator effects on sediment resuspension: A biophysical metabolic approach. Science of the Total Environment, 792, 1-10. [148215]. https://doi.org/10.1016/j.scitotenv.2021.148215

Buijs, V. A., Zuijdgeest, X. C. L., Groenewald, J. Z., Crous, P. W., & De Vries, R. P. (2021). Carbon utilization and growth-inhibition of citrus-colonizing Phyllosticta species. Fungal Biology, 125(10), 815-825. https://doi.org/10.1016/j.funbio.2021.05.003

van Brenk, B., & Wösten, H. A. B. (2021). A screening method for decoloration of xenobiotic dyes by fungi. Journal of Microbiological Methods, 188, 1-4. [106301]. https://doi.org/10.1016/j.mimet.2021.106301

Keizer, E. M., Valdes, I. D., Forn-Cuni, G., Klijn, E., Meijer, A. H., Hillmann, F., Wösten, H. A. B., & de Cock, H. (2021). Correction: Variation of virulence of five Aspergillus fumigatus isolates in four different infection models. PLoS One, 16(9), [e0258072]. https://doi.org/10.1371/journal.pone.0258072

De Geyter, D., Vanstokstraeten, R., Crombé, F., Tommassen, J., Wybo, I., & Piérard, D. (2021). Sink drains as reservoirs of VIM-2 metallo-β-lactamase-producing Pseudomonas aeruginosa in a Belgian intensive care unit: relation to patients investigated by whole-genome sequencing. Journal of Hospital Infection, 115, 75-82. https://doi.org/10.1016/j.jhin.2021.05.010

Chaloner, T. M., Gurr, S. J., & Bebber, D. P. (2021). Plant pathogen infection risk tracks global crop yields under climate change. Nature Climate Change, 11(8), 710-715. https://doi.org/10.1038/s41558-021-01104-8

Wang, H., Peng, Y., Wang, C., Wen, Q., Xu, J., Hu, Z., Jia, X., Zhao, X., Lian, W., Temmerman, S., Wolf, J., & Bouma, T. (2021). Mangrove Loss and Gain in a Densely Populated Urban Estuary: Lessons From the Guangdong-Hong Kong-Macao Greater Bay Area. Frontiers in marine science, 8, 1-14. [693450]. https://doi.org/10.3389/fmars.2021.693450

Chong, P., Essoh, J. N., Arango Isaza, R. E., Keizer, P., Stergiopoulos, I., Seidl, M. F., Guzman, M., Sandoval, J., Verweij, P. E., Scalliet, G., Sierotzski, H., de Lapeyre de Bellaire, L., Crous, P. W., Carlier, J., Cros, S., Meijer, H. J. G., Peralta, E. L., & Kema, G. H. J. (2021). A world-wide analysis of reduced sensitivity to DMI fungicides in the banana pathogen Pseudocercospora fijiensis. Pest Management Science, 77(7), 3273-3288. https://doi.org/10.1002/ps.6372

Keizer, E. M., Valdes, I. D., Forn-Cuni, G., Klijn, E., Meijer, A. H., Hillman, F., Wösten, H. A. B., & de Cock, H. (2021). Variation of virulence of five Aspergillus fumigatus isolates in four different infection models. PLoS One, 16(7), [e0252948]. https://doi.org/10.1371/journal.pone.0252948

Suiker, I. M., Arkesteijn, G. J. A., Zeegers, P. J., & Wösten, H. A. B. (2021). Presence of Saccharomyces cerevisiae subsp. diastaticus in industry and nature and spoilage capacity of its vegetative cells and ascospores. International Journal of Food Microbiology, 347, 1-9. [109173]. https://doi.org/10.1016/j.ijfoodmicro.2021.109173

Mantilla, M. J., Cabrera Díaz, C. E., Ariza-Aranguren, G., de Cock, H., Helms, J. B., Restrepo, S., Jiménez, E., & Celis Ramírez, A. M. (2021). Back to the Basics: Two Approaches for the Identification and Extraction of Lipid Droplets from Malassezia pachydermatis CBS1879 and Malassezia globosa CBS7966. Current Protocols, 1(5), 1-16. [e122]. https://doi.org/10.1002/cpz1.122

Howell, G., & Bleichrodt, R-J. (2021). Single Cell Analysis and Sorting of Aspergillus fumigatus by Flow Cytometry. Bio-protocol, 11(8), 1-11. [e3993]. https://doi.org/10.21769/BioProtoc.3993

Keizer, E. M. (2021). Interaction between the opportunistic pathogen Aspergillus fumigatus and its host. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/632

Suiker e/v Kool, I. M. (2021). Heterogeneity between and within strains of the beer spoilage yeast Saccharomyces cerevisiae subspecies diastaticus. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/571

Ijadpanahsaravi, M., Punt, M., Wösten, H. A. B., & Teertstra, W. R. (2021). Minimal nutrient requirements for induction of germination of Aspergillus niger conidia. Fungal Biology, 125(3), 231-238. https://doi.org/10.1016/j.funbio.2020.11.004

Crous, P. W., Lombard, L., Sandoval-Denis, M., Seifert, K. A., Schroers, H. J., Chaverri, P., Gené, J., Guarro, J., Hirooka, Y., Bensch, K., Kema, G. H. J., Lamprecht, S. C., Cai, L., Rossman, A. Y., Stadler, M., Summerbell, R. C., Taylor, J. W., Ploch, S., Visagie, C. M., ... Thines, M. (2021). Fusarium: more than a node or a foot-shaped basal cell. Studies in Mycology, 98, 1-184. [100116]. https://doi.org/10.1016/j.simyco.2021.100116

Dell'Olmo, E., Gaglione, R., Cesaro, A., Cafaro, V., Teertstra, W. R., de Cock, H., Notomista, E., Haagsman, H. P., Veldhuizen, E. J. A., & Arciello, A. (2021). Host defence peptides identified in human apolipoprotein B as promising antifungal agents. Applied Microbiology and Biotechnology, 105(5), 1953-1964. https://doi.org/10.1007/s00253-021-11114-3

Uruén, C., Chopo-Escuin, G., Tommassen, J., Mainar-Jaime, R. C., & Arenas, J. (2021). Biofilms as promoters of bacterial antibiotic resistance and tolerance. Antibiotics, 10(1), 1-36. [3]. https://doi.org/10.3390/antibiotics10010003

Vos, A. M., Bleichrodt, R-J., Herman, K. C., Ohm, R. A., Scholtmeijer, K., Schmitt, H., Lugones, L. G., & Wösten, H. A. B. (2021). Cycling in degradation of organic polymers and uptake of nutrients by a litter-degrading fungus. Environmental Microbiology, 23(1), 224-238. https://doi.org/10.1111/1462-2920.15297

Dalonso, N., Petkowicz, C. L. O., Lugones, L. G., Silveira, M. L. L., & Gern, R. M. M. (2021). Comparison of cell wall polysaccharides in schizophyllum commune after changing phenotype by mutation. Anais da Academia Brasileira de Ciencias, 93, 1-17. [e20210047]. https://doi.org/10.1590/0001-3765202120210047

Pérez-Ortega, J., Van Harten, R. M., Van Boxtel, R., Plisnier, M., Louckx, M., Ingels, D., Haagsman, H. P., & Tommassen, J. (2021). Reduction of endotoxicity in Bordetella bronchiseptica by lipid A engineering: Characterization of lpxL1 and pagP mutants. Virulence, 12(1), 1452-1468. https://doi.org/10.1080/21505594.2021.1929037

Arenas, J., Szabo, Z., van der Wal, J., Maas, C., Riaz, T., Tønjum, T., & Tommassen, J. (2021). Serum proteases prevent bacterial biofilm formation: role of kallikrein and plasmin. Virulence, 12(1), 2902-2917. https://doi.org/10.1080/21505594.2021.2003115

Arenas, J., Catón, L., Van Den Hoeven, T., De Maat, V., Cruz Herrero, J., & Tommassen, J. (2020). The outer-membrane protein MafA of Neisseria meningitidis constitutes a novel protein secretion pathway specific for the fratricide protein MafB. Virulence, 11(1), 1701-1715. https://doi.org/10.1080/21505594.2020.1851940

Ehren, H. L., Appels, F. V. W., Houben, K., Renault, M. A. M., Wösten, H. A. B., & Baldus, M. (2020). Characterization of the cell wall of a mushroom forming fungus at atomic resolution using solid-state NMR spectroscopy. Cell Surface, 6, 1-10. [100046]. https://doi.org/10.1016/j.tcsw.2020.100046

Arenas, J., Pupo, E., Phielix, C., David, D., Zariri, A., Zamyatina, A., Tommassen, J., & Van Der Ley, P. (2020). Shortening the Lipid A Acyl Chains of Bordetella pertussis Enables Depletion of Lipopolysaccharide Endotoxic Activity. Vaccines, 8(4), [594]. https://doi.org/10.3390/vaccines8040594

Valdes, I. D., Hart de Ruijter, A. B. P., Torres, C. J., Breuker, J. C. A., Wösten, H. A. B., & de Cock, H. (2020). The sino-nasal warzone: transcriptomic and genomic studies on sino-nasal aspergillosis in dogs. npj Biofilms and Microbiomes, 6(1), 1-12. [51]. https://doi.org/10.1038/s41522-020-00163-7

van den Brule, T., Lee, C. L. S., Houbraken, J., Haas, P. J., Wösten, H., & Dijksterhuis, J. (2020). Conidial heat resistance of various strains of the food spoilage fungus Paecilomyces variotii correlates with mean spore size, spore shape and size distribution. Food Research International, 137, 1-9. [109514]. https://doi.org/10.1016/j.foodres.2020.109514

van Eijk, M., Boerefijn, S., Rosa, M., Morren, M. J. H., van der Ent, C. K., Kraak, B., Dijksterhuis, J., Valdes Barrera, I. D., Haagsman, H. P., & de Cock, H. (2020). Cathelicidin-inspired antimicrobial peptides as novel antifungal compounds. Medical Mycology, 58(8), 1073–1084. https://doi.org/10.1093/mmy/myaa014

Steinberg, G., & Gurr, S. J. (2020). Fungi, fungicide discovery and global food security. Fungal Genetics and Biology, 144, [103476]. https://doi.org/10.1016/j.fgb.2020.103476

Ohm, R. A. (2020). Fungal Genomics. In J. P. Benz, & K. Schipper (Eds.), Genetics and Biotechnology (3 ed., pp. 207-224). (The Mycota; Vol. 2). Springer Cham. https://doi.org/10.1007/978-3-030-49924-2_9

Miyauchi, S., Kiss, E., Kuo, A., Drula, E., Kohler, A., Sánchez-García, M., Morin, E., Andreopoulos, B., Barry, K. W., Bonito, G., Buée, M., Carver, A., Chen, C., Cichocki, N., Clum, A., Culley, D., Crous, P. W., Fauchery, L., Girlanda, M., ... Martin, F. M. (2020). Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits. Nature Communications, 11(1), [5125]. https://doi.org/10.1038/s41467-020-18795-w

Keizer, E. M., Wösten, H. A. B., & de Cock, H. (2020). EphA2-Dependent Internalization of A. fumigatus Conidia in A549 Lung Cells Is Modulated by DHN-Melanin. Frontiers in Microbiology, 11, 1-12. [534118]. https://doi.org/10.3389/fmicb.2020.534118

Keizer, E. M., Wosten, H. A. B., & de Cock, H. (2020). EphA2-Dependent Internalization ofA. fumigatusConidia in A549 Lung Cells Is Modulated by DHN-Melanin. Frontiers in Microbiology, 11, 1-12. [534118]. https://doi.org/10.3389/fmicb.2020.534118

Punt, M., van den Brule, T., Teertstra, W. R., Dijksterhuis, J., den Besten, H. M. W., Ohm, R. A., & Wösten, H. A. B. (2020). Impact of maturation and growth temperature on cell-size distribution, heat-resistance, compatible solute composition and transcription profiles of Penicillium roqueforti conidia. Food Research International, 136, 1-12. [109287]. https://doi.org/10.1016/j.foodres.2020.109287

Herman, K. C., Wösten, H. A. B., Fricker, M. D., & Bleichrodt, R. J. (2020). Growth induced translocation effectively directs an amino acid analogue to developing zones in Agaricus bisporus. Fungal Biology, 124(12), 1013-1023. https://doi.org/10.1016/j.funbio.2020.09.002

Sonnenberg, A. S. M., Sedaghat-Telgerd, N., Lavrijssen, B., Ohm, R. A., Hendrickx, P. M., Scholtmeijer, K., Baars, J. J. P., & van Peer, A. (2020). Telomere-to-telomere assembled and centromere annotated genomes of the two main subspecies of the button mushroom Agaricus bisporus reveal especially polymorphic chromosome ends. Scientific Reports, 10(1), [14653]. https://doi.org/10.1038/s41598-020-71043-5

Torres, M., de Cock, H., & Celis Ramírez, A. M. (2020). In Vitro or In Vivo Models, the Next Frontier for Unraveling Interactions between Malassezia spp. and Hosts. How Much Do We Know? Journal of fungi (Basel, Switzerland), 6(3), [155]. https://doi.org/10.3390/jof6030155

Goles, E., Tsompanas, M. A., Adamatzky, A., Tegelaar, M., Wosten, H. A. B., & Martínez, G. J. (2020). Computational universality of fungal sandpile automata. Physics Letters, Section A: General, Atomic and Solid State Physics, 384(22), 1-8. [126541]. https://doi.org/10.1016/j.physleta.2020.126541

Will, I., Das, B., Trinh, T., Brachmann, A., Ohm, R. A., & de Bekker, C. (2020). Genetic underpinnings of host manipulation by ophiocordyceps as revealed by comparative transcriptomics. G3: Genes, Genomes, Genetics, 10(7), 2275-2296. https://doi.org/10.1534/g3.120.401290

Wrobel, A., Saragliadis, A., Pérez-Ortega, J., Sittman, C., Göttig, S., Liskiewicz, K., Spence, M. H., Schneider, K., Leo, J. C., Arenas, J., & Linke, D. (2020). The inverse autotransporters of Yersinia ruckeri, YrInv and YrIlm, contribute to biofilm formation and virulence. Environmental Microbiology, 22(7), 2939-2955. https://doi.org/10.1111/1462-2920.15051

Celis Ramírez, A. M., Amézquita, A., Cardona Jaramillo, J. E. C., Matiz-Cerón, L. F., Andrade-Martínez, J. S., Triana, S., Mantilla, M. J., Restrepo, S., Barrios, A. F. G., & de Cock, H. (2020). Analysis of Malassezia Lipidome Disclosed Differences Among the Species and Reveals Presence of Unusual Yeast Lipids. Frontiers in cellular and infection microbiology, 10, [338]. https://doi.org/10.3389/fcimb.2020.00338

Appels, F. V. W., van den Brandhof, J. G., Dijksterhuis, J., de Kort, G. W., & Wösten, H. A. B. (2020). Fungal mycelium classified in different material families based on glycerol treatment. Communications Biology, 3(1), 1-5. [334]. https://doi.org/10.1038/s42003-020-1064-4

Kölle, M., Horta, M. A. C., Nowrousian, M., Ohm, R. A., Benz, J. P., & Pilgård, A. (2020). Degradative Capacity of Two Strains of Rhodonia placenta: From Phenotype to Genotype. Frontiers in Microbiology, 11, 1-15. [1338]. https://doi.org/10.3389/fmicb.2020.01338

Miyauchi, S., Hage, H., Drula, E., Lesage-Meessen, L., Berrin, J-G., Navarro, D., Favel, A., Chaduli, D., Grisel, S., Haon, M., Piumi, F., Levasseur, A., Lomascolo, A., Ahrendt, S., Barry, K., LaButti, K. M., Chevret, D., Daum, C., Mariette, J., ... Rosso, M-N. (2020). Conserved white rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus. DNA Research, 27(2), 1-14. https://doi.org/10.1093/dnares/dsaa011

Haridas, S., Albert, R., Binder, M., Bloem, J., LaButti, K., Salamov, A., Andreopoulos, B., Baker, S. E., Barry, K., Bills, G., Bluhm, B. H., Cannon, C., Castanera, R., Culley, D. E., Daum, C., Ezra, D., González, J. B., Henrissat, B., Kuo, A., ... Grigoriev, I. V. (2020). 101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens. Studies in Mycology, 96, 141-153. https://doi.org/10.1016/j.simyco.2020.01.003

Adamatzky, A., Tegelaar, M., Wosten, H. A. B., Powell, A. L., Beasley, A. E., & Mayne, R. (2020). On Boolean gates in fungal colony. BioSystems, 193-194, 1-9. [104138]. https://doi.org/10.1016/j.biosystems.2020.104138

Wösten, H. A. B. (2020). Jos Wessels, 30 May 1934-30 October 2019. Mycopathologia, 112(4), 852-855. https://doi.org/10.1080/00275514.2020.1754055

Tegelaar, M., van der Lans, G. P. A., & Wösten, H. A. B. (2020). Apical but not sub-apical hyphal compartments are self-sustaining in growth. Antonie van Leeuwenhoek, 113, 697-706. https://doi.org/10.1007/s10482-020-01383-9

Meyer, V., Basenko, E. Y., Benz, J. P., Braus, G. H., Caddick, M. X., Csukai, M., de Vries, R. P., Endy, D., Frisvad, J. C., Gunde-Cimerman, N., Haarmann, T., Hadar, Y., Hansen, K., Johnson, R. I., Keller, N. P., Kraševec, N., Mortensen, U. H., Perez, R., Ram, A. F. J., ... Wösten, H. A. B. (2020). Growing a circular economy with fungal biotechnology: a white paper. Fungal Biology and Biotechnology, 7, 1-23. [5]. https://doi.org/10.1186/s40694-020-00095-z

Steinberg, G., Schuster, M., Gurr, S. J., Schrader, T. A., Schrader, M., Wood, M., Early, A., & Kilaru, S. (2020). A lipophilic cation protects crops against fungal pathogens by multiple modes of action. Nature Communications, 11(1), [1608]. https://doi.org/10.1038/s41467-020-14949-y

Sastoque, A., Triana, S., Ehemann, K., Suarez, L., Restrepo, S., Wösten, H., de Cock, H., Fernández-Niño, M., González Barrios, A. F., & Celis Ramírez, A. M. (2020). New Therapeutic Candidates for the Treatment of Malassezia pachydermatis -Associated Infections. Scientific Reports, 10(1), [4860]. https://doi.org/10.1038/s41598-020-61729-1

Tegelaar, M. (2020). Fungal heterogeneity; from zones to compartments. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University.

van den Brule, T., Punt, M., Teertstra, W., Houbraken, J., Wösten, H., & Dijksterhuis, J. (2020). The most heat-resistant conidia observed to date are formed by distinct strains of Paecilomyces variotii. Environmental Microbiology, 22(3), 986-999. https://doi.org/10.1111/1462-2920.14791

Appels, F. V. W. (2020). The use of fungal mycelium for the production of bio-based materials. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Universiteit Utrecht.

Tegelaar, M., Aerts, D., Teertstra, W. R., & Wösten, H. A. B. (2020). Spatial induction of genes encoding secreted proteins in micro-colonies of Aspergillus niger. Scientific Reports, 10(1), [1536]. https://doi.org/10.1038/s41598-020-58535-0

Tegelaar, M., Bleichrodt, R-J., Nitsche, B., Ram, A. F. J., & Wösten, H. A. B. (2020). Subpopulations of hyphae secrete proteins or resist heat stress in Aspergillus oryzae colonies. Environmental Microbiology, 22(1), 447-455. https://doi.org/10.1111/1462-2920.14863

Arenas Busto, J. A., Paganelli, F. L., Rodríguez-Castaño, P., Cano-Crespo, S., van der Ende, A., van Putten, J. P. M., & Tommassen, J. P. M. (2020). Expression of the Gene for Autotransporter AutB of Neisseria meningitidis Affects Biofilm Formation and Epithelial Transmigration. In S. Bleves, R. Voulhoux, B. Ize, T. Sana, & D. Monack (Eds.), Protein Export and Secretion Among Bacterial Pathogens (pp. 08-24). Frontiers Media SA.

Adamatzky, A., Goles, E., Martínez, G. J., Tsompanas, M. A., Tegelaar, M., & Wosten, H. A. B. (2020). Fungal automata. Complex Systems, 29(4), 759-778. https://doi.org/10.25088/ComplexSystems.29.4.759

Adamatzky, A., Ayres, P., Belotti, G., & Wosten, H. (2019). Fungal architecture. (pp. 1-19). arXiv. https://doi.org/10.48550/arXiv.1912.13262

Adamatzky, A., Ayres, P., Belotti, G., & Wösten, H. (2019). Fungal architecture position paper. International Journal of Unconventional Computing, 14(5-6), 397-411. https://www.oldcitypublishing.com/journals/ijuc-home/ijuc-issue-contents/ijuc-volume-14-number-5-6-2019/ijuc-14-5-6-p-397-411/

Hawksworth, D. L., Pawlowska, J., Bakhshi, M., Zare, R., Khodaparast, A., Silva-Flores, P., Salazar-Vidal, V., Diban, M. J., Troncoso, S., Narvaez, F., Soto, D., Caceres, V., Valdes, C., Knudsen, H., Rikkinen, J. K., Printzen, C., Aoki, T., Telleria, M. T., Martin, M. P., ... Pirozynski, K. A. (2019). MycoNews 2019: editorials, news, reports, awards, personalia, book news, and correspondence. IMA Fungus, 10(1). https://doi.org/10.1186/s43008-019-0024-4

Khosravi, C., Kowalczyk, J. E., Chroumpi, T., Battaglia, E., Aguilar Pontes, M., Peng, M., Wiebenga, A., Ng, V., Lipzen, A., He, G., Bauer, D., Grigoriev, I. V., & De Vries, R. P. (2019). Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network. BMC Genomics, 20(1), [853]. https://doi.org/10.1186/s12864-019-6235-7

Patyshakuliyeva, A., Falkoski, D. L., Wiebenga, A., Timmermans, K., & De Vries, R. P. (2019). Macroalgae Derived Fungi Have High Abilities to Degrade Algal Polymers. Microorganisms, 8(1). https://doi.org/10.3390/microorganisms8010052

Wösten, H. A. B. (2019). Filamentous fungi for the production of enzymes, chemicals and materials. Current Opinion in Biotechnology, 59, 65-70. https://doi.org/10.1016/j.copbio.2019.02.010

Valdes Barrera, I. D. (2019). Host-pathogen interactions at the sino-nasal surface of dogs. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University.

Coconi Linares, N., Di Falco, M., Benoit-gelber, I., Gruben, B. S., Peng, M., Tsang, A., Mäkelä, M. R., & De Vries, R. P. (2019). The presence of trace components significantly broadens the molecular response of Aspergillus niger to guar gum. New Biotechnology, 51, 57-66. https://doi.org/10.1016/j.nbt.2019.02.005

Arenas, J., Pupo, E., De Jonge, E., Pérez-Ortega, J., Schaarschmidt, J., Van Der Ley, P., & Tommassen, J. (2019). Substrate specificity of the pyrophosphohydrolase LpxH determines the asymmetry of Bordetella pertussis lipid A. Journal of Biological Chemistry, 294(20), 7982-7989. https://doi.org/10.1074/jbc.RA118.004680

Tan, Y. P. (2019). Taxonomy and biodiversity of plant pathogenic fungi from Australia. [Doctoral thesis 2 (Research NOT UU / Graduation UU), Universiteit Utrecht]. Utrecht University.

Mbareche, H., Veillette, M., Teertstra, W., Kegel, W., Bilodeau, G. J., Wösten, H. A. B., & Duchaine, C. (2019). Fungal Cells Recovery From Air Samples: A Tale of Loss And Gain. Applied and Environmental Microbiology, 85(9), 1-15. [e02941-18]. https://doi.org/10.1128/AEM.02941-18

Krizsán, K., Almási, É., Merényi, Z., Sahu, N., Virágh, M., Kószó, T., Mondo, S., Kiss, B., Bálint, B., Kües, U., Barry, K., Cseklye, J., Hegedüs, B., Henrissat, B., Johnson, J., Lipzen, A., Ohm, R. A., Nagy, I., Pangilinan, J., ... Nagy, L. G. (2019). Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi. Proceedings of the National Academy of Sciences of the United States of America, 116(15), 7409-7418. https://doi.org/10.1073/pnas.1817822116

Sepčić, K., Sabotič, J., Ohm, R. A., Drobne, D., & Kokalj, A. J. (2019). First evidence of cholinesterase-like activity in Basidiomycota. PLoS One, 14(4), [0216077]. https://doi.org/10.1371/journal.pone.0216077

Varga, T., Krizsán, K., Földi, C., Dima, B., Sánchez-García, M., Sánchez-Ramírez, S., Szöllősi, G. J., Szarkándi, J. G., Papp, V., Albert, L., Andreopoulos, W., Angelini, C., Antonín, V., Barry, K. W., Bougher, N. L., Buchanan, P., Buyck, B., Bense, V., Catcheside, P., ... Nagy, L. G. (2019). Megaphylogeny resolves global patterns of mushroom evolution. Nature Ecology and Evolution, 3(4), 668-678. https://doi.org/10.1038/s41559-019-0834-1

Aerts, D., van den Bergh, S. G., Post, H., Altelaar, M. A. F., Arentshorst, M., Ram, A. F. J., Ohm, R. A., & Wösten, H. A. B. (2019). FlbA-Regulated Gene rpnR Is Involved in Stress Resistance and Impacts Protein Secretion when Aspergillus niger Is Grown on Xylose. Applied and Environmental Microbiology, 85(2), 1-12. [e02282-18]. https://doi.org/10.1128/AEM.02282-18

Appels, F. V. W., Camere, S., Montalti, M., Karana, E., Jansen, K. M. B., Dijksterhuis, J., Krijgsheld, P., & Wösten, H. A. B. (2019). Fabrication factors influencing mechanical, moisture- and water-related properties of mycelium-based composites. Materials and Design, 161, 64-71. https://doi.org/10.1016/j.matdes.2018.11.027

Arenas, J., Bossers-de Vries, R., Harders-Westerveen, J., Buys, H., Ruuls-van Stalle, L. M. F., Stockhofe-Zurwieden, N., Zaccaria, E., Tommassen, J., Wells, J. M., Smith, H. E., & de Greeff, A. (2019). In vivo transcriptomes of Streptococcus suis reveal genes required for niche-specific adaptation and pathogenesis. Virulence, 10(1), 334-351. https://doi.org/10.1080/21505594.2019.1599669

Ordonez, S. R., van Eijk, M., Escobar Salazar, N., de Cock, H., Veldhuizen, E. J. A., & Haagsman, H. P. (2019). Antifungal activities of surfactant protein D in an environment closely mimicking the lung lining. Molecular Immunology, 105, 260-269. https://doi.org/10.1016/j.molimm.2018.12.003

Jan Vonk, P., Escobar, N., Wösten, H. A. B., Lugones, L. G., & Ohm, R. A. (2019). High-throughput targeted gene deletion in the model mushroom Schizophyllum commune using pre-assembled Cas9 ribonucleoproteins. Scientific Reports, 9(1), 1-8. [7632]. https://doi.org/10.1038/s41598-019-44133-2

Wang, F., Zhang, L., Wu, S., Li, W., Sun, M., Feng, W., Ding, D., Yeung-Shan Wong, S., Zhu, P., Evans, G. J., Wing, Y. K., Zhang, J., Vlaanderen, J. J., Vermeulen, R. C. H., Zhang, Y., Chan, EY-Y., Li, Z., & Tse, L. A. (2019). Night shift work and abnormal liver function: Is non-alcohol fatty liver a necessary mediator? Occupational and Environmental Medicine, 76(2), 83-89. https://doi.org/10.1136/oemed-2018-105273

Urquhart, A. S., Mondo, S. J., Mäkelä, M. R., Hane, J. K., Wiebenga, A., He, G., Mihaltcheva, S., Pangilinan, J., Lipzen, A., Barry, K., de Vries, R. P., Grigoriev, I. V., & Idnurm, A. (2018). Genomic and Genetic Insights Into a Cosmopolitan Fungus, Paecilomyces variotii (Eurotiales). Frontiers in Microbiology, 9, [3058]. https://doi.org/10.3389/fmicb.2018.03058

Wu, B., Xu, Z., Knudson, A., Carlson, A., Chen, N., Kovaka, S., LaButti, K., Lipzen, A., Pennachio, C., Riley, R., Schakwitz, W., Umezawa, K., Ohm, R. A., Grigoriev, I. V., Nagy, L. G., Gibbons, J., & Hibbett, D. (2018). Genomics and Development of Lentinus tigrinus: A White-Rot Wood-Decaying Mushroom with Dimorphic Fruiting Bodies. Genome Biology and Evolution, 10(12), 3250-3261. https://doi.org/10.1093/gbe/evy246

Vesth, T. C., Nybo, J. L., Theobald, S., Frisvad, J. C., Larsen, T. O., Nielsen, K. F., Hoof, J. B., Brandl, J., Salamov, A., Riley, R., Gladden, J. M., Phatale, P., Nielsen, M. T., Lyhne, E. K., Kogle, M. E., Strasser, K., McDonnell, E., Barry, K., Clum, A., ... Andersen, M. R. (2018). Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri. Nature Genetics, 50, 1688-1695. https://doi.org/10.1038/s41588-018-0246-1

Zacchetti, B., Wösten, H. A. B., & Claessen, D. (2018). Multiscale heterogeneity in filamentous microbes. Biotechnology Advances, 36(8), 2138-2149. https://doi.org/10.1016/j.biotechadv.2018.10.002

Kurucz, V., Kiss, B., Szigeti, Z. M., Nagy, G., Orosz, E., Hargitai, Z., Harangi, S., Wiebenga, A., de Vries, R. P., Pócsi, I., & Emri, T. (2018). Physiological background of the remarkably high Cd2+ tolerance of the Aspergillus fumigatus Af293 strain. Journal of Basic Microbiology, 58(11), 957-967. https://doi.org/10.1002/jobm.201800200

Valdes, I. D., van den Berg, J., Haagsman, A., Escobar, N., Meis, J. F., Hagen, F., Haas, P. J., Houbraken, J., Wösten, H. A. B., & de Cock, H. (2018). Comparative genotyping and phenotyping of Aspergillus fumigatus isolates from humans, dogs and the environment. BMC Microbiology, 18(1), 1-11. [118]. https://doi.org/10.1186/s12866-018-1244-2

Vonk, P. J., & Ohm, R. A. (2018). The role of homeodomain transcription factors in fungal development. Fungal Biology Reviews, 32(4), 219-230. https://doi.org/10.1016/j.fbr.2018.04.002

Emri, T., Antal, K., Riley, R., Karanyi, Z., Miskel, M., Orosz, E., Baker, S. E., Wiebenga, A., de Vries, R. P., & Pocsi, I. (2018). Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance. Studies in Mycology, 91, 23-36. https://doi.org/10.1016/j.simyco.2018.10.003

Mäkelä, M. R., DiFalco, M., McDonnell, E., Nguyen, T. T. M., Wiebenga, A., Hildén, K., Peng, M., Grigoriev, I. V., Tsang, A., & de Vries, R. P. (2018). Genomic and exoproteomic diversity in plant biomass degradation approaches among Aspergilli. Studies in Mycology, 91, 79-99. https://doi.org/10.1016/j.simyco.2018.09.001

Escobar, N., Valdes, I. D., Keizer, E. M., Ordonez, S. R., Ohm, R. A., Wösten, H. A. B., & de Cock, H. (2018). Expression profile analysis reveals that Aspergillus fumigatus but not Aspergillus niger makes type II epithelial lung cells less immunological alert. BMC Genomics, 19(1), 1-17. [534]. https://doi.org/10.1186/s12864-018-4895-3

Keizer, E. M., Valdes, I. D., Van Baelen, F., Schinkel, M., Wösten, H. A. B., & Cock, H. (2018). Alternative mechanisms of protection of Aspergillus fumigatus conidia against Reactive Oxygen Species. Medical Mycology, 56(Suppl 2), S156. https://doi.org/10.1093/mmy/myy036

De Cock, H., Celis, A., Triana, S., & Wösten, H. (2018). Characterization of growth of lipid-dependent Malassezia yeast species, members of the skin mycobiome. Medical Mycology, 56(suppl 2), S16. https://doi.org/10.1093/mmy/myy036

Keizer, E. M., Escobar, N., Valdes, I. D., Ordonez, S. R., Ohm, R. A., Wösten, H. A. B., & Cock, H. (2018). Differential gene expression of Aspergillus fumigatus and Aspergillus niger interacting with epithelial lung cells. Medical Mycology, 56(Suppl 2), S17. https://doi.org/10.1093/mmy/myy036

Valdes, I. D., Wösten, H. A. B., De Cock, H., Escobar, N., Van Den Berg, J., Haagsman, A., F Meis, J., Hagen, F., Houbraken, J., & Haas, P. J. (2018). Heterogeneity and within-host adaption observed in clinical isolates of Aspergillus fumigatus. Medical Mycology, 56(Suppl 2), 41. https://doi.org/10.1093/mmy/myy036

Celis, A. M., Cock, H., Triana, S., Cardona, J., Restrepo, S., Gonzalez, A., & Wösten, H. A. B. (2018). Identification and characterization of lipid droplets in Malassezia furfur. Medical Mycology, 56(Suppl 2), 150. https://doi.org/10.1093/mmy/myy036

Valdes, I. D., Wösten, H. A. B., & De Cock, H. (2018). Transcriptomic analysis of non-invasive infections by Aspergillus fumigatus: The case of sino-nasal aspergillosis (SNA) in dogs. Medical Mycology, 56(Suppl 2), S41. https://doi.org/10.1093/mmy/myy036

Gehrmann, T., Pelkmans, J. F., Ohm, R. A., Vos, A. M., Sonnenberg, A. S. M., Baars, J. J. P., Wösten, H. A. B., Reinders, M. J. T., & Abeel, T. (2018). Nucleus-specific expression in the multinuclear mushroom-forming fungus reveals different nuclear regulatory programs. Proceedings of the National Academy of Sciences of the United States of America, 115(17), 4429-4434. https://doi.org/10.1073/pnas.1721381115

Knapp, D. G., Németh, J. B., Barry, K., Hainaut, M., Henrissat, B., Johnson, J., Kuo, A., Lim, J. H. P., Lipzen, A., Nolan, M., Ohm, R. A., Tamás, L., Grigoriev, I. V., Spatafora, J. W., Nagy, L. G., & Kovács, G. M. (2018). Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi. Scientific Reports, 8(1), [6321]. https://doi.org/10.1038/s41598-018-24686-4

Aerts, D. (2018). Regulators controlled by the sporulation gene flbA of Aspergillus niger. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University.

Macìas-Pérez, J. F., Delabrouille, J., De Bernardis, P., Bouchet, F. R., Achúcarro, A., Ade, P. A. R., Allison, R., Arroja, F., Artal, E., Ashdown, M., Baccigalupi, C., Ballardini, M., Banday, A. J., Banerji, R., Barbosa, D., Bartlett, J., Bartolo, N., Basak, S., Baselmans, J. J. A., ... Zannoni, M. (2018). Exploring cosmic origins with CORE: Survey requirements and mission design. Journal of Cosmology and Astroparticle Physics, 2018(4), [014]. https://doi.org/10.1088/1475-7516/2018/04/014

Khosravi, C., Battaglia, E., Kun, R. S., Dalhuijsen, S., Visser, J., Aguilar-Pontes, M. V., Zhou, M., Heyman, H. M., Kim, Y. M., Baker, S. E., & de Vries, R. P. (2018). Blocking hexose entry into glycolysis activates alternative metabolic conversion of these sugars and upregulates pentose metabolism in Aspergillus nidulans. BMC Genomics, 19(1), [214]. https://doi.org/10.1186/s12864-018-4609-x

Lopez, D., Ribeiro, S., Label, P., Fumanal, B., Venisse, J-S., Kohler, A., de Oliveira, R. R., LaButti, K. M., Lipzen, A., Lail, K., Bauer, D., Ohm, R. A., Barry, K. W., Spatafora, J. W., Grigoriev, I. V., Martin, F. M., & Pujade-Renaud, V. (2018). Genome-Wide Analysis of Leaf Fall Disease Putative Effectors. Frontiers in Microbiology, 9. https://doi.org/10.3389/fmicb.2018.00276

Segers, F. J. J., Wösten, H. A. B., & Dijksterhuis, J. (2018). Aspergillus niger mutants affected in conidial pigmentation do not have an increased susceptibility to water stress during growth at low water activity. Letters in Applied Microbiology, 66(3), 238-243. https://doi.org/10.1111/lam.12846

Martino, E., Morin, E., Grelet, G-A., Kuo, A., Kohler, A., Daghino, S., Barry, K. W., Cichocki, N., Clum, A., Dockter, R. B., Hainaut, M., Kuo, R. C., LaButti, K. M., Lindahl, B. D., Lindquist, E. A., Lipzen, A., Khouja, H-R., Magnuson, J., Murat, C., ... Perotto, S. (2018). Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists. New Phytologist, 217(3), 1213-1229. https://doi.org/10.1111/nph.14974

Gerritsen, M. G., Brinkman, P., Escobar Salazar, N., Bos, L. D., de Heer, K., Meijer, M., Janssen, H-G., de Cock, H., Wösten, H. A. B., Visser, C. E., van Oers, M. H. J., & Sterk, P. J. (2018). Profiling of volatile organic compounds produced by clinical Aspergillus isolates using gas chromatography-mass spectrometry. Medical Mycology, 56(2), 253–256. https://doi.org/10.1093/mmy/myx035

Cerullo, G., Houbraken, J., Granchi, Z., Pepe, O., Varriale, S., Ventorino, V., Chin-A-Woeng, T., Meijer, M., de Vries, R. P., & Faraco, V. (2018). Draft Genome Sequence of Talaromyces adpressus. Genome Announcements, 6(2), [e01430-17]. https://doi.org/10.1128/genomeA.01430-17

Sun, X. M., Feng, W., Wang, F., Li, P., Li, Z., Li, M., Tse, G., Vlaanderen, J., Vermeulen, R., & Tse, L. A. (2018). Meta-analysis on shift work and risks of specific obesity types. Obesity Reviews, 19(1), 28–40. https://doi.org/10.1111/obr.12621

Läkk, H., Krijgsheld, P., Montalti, M., & Wösten, H. (2018). Fungal based biocomposite for habitat structures on the Moon and Mars. Proceedings of the International Astronautical Congress, IAC, 2018-October, 1-11.

Appels, F. V. W., Dijksterhuis, J., Lukasiewicz, C. E., Jansen, K. M. B., Wösten, H. A. B., & Krijgsheld, P. (2018). Hydrophobin gene deletion and environmental growth conditions impact mechanical properties of mycelium by affecting the density of the material. Scientific Reports, 8, 1-7. [4703]. https://doi.org/10.1038/s41598-018-23171-2

Grimm, D., & Wösten, H. A. B. (2018). Mushroom cultivation in the circular economy. Applied Microbiology and Biotechnology, 102(18), 7795-7803. https://doi.org/10.1007/s00253-018-9226-8

Vos, A. M., Jurak, E., de Gijsel, P., Ohm, R. A., Henrissat, B., Lugones, L. G., Kabel, M. A., & Wösten, H. A. B. (2018). Production of α-1,3-L-arabinofuranosidase active on substituted xylan does not improve compost degradation by Agaricus bisporus. PLoS One, 13(7), 1-12. [e0201090]. https://doi.org/10.1371/journal.pone.0201090

Varriale, S., Houbraken, J., Granchi, Z., Pepe, O., Cerullo, G., Ventorino, V., Chin-A-woeng, T., Meijer, M., Riley, R., Grigoriev, I. V., Henrissat, B., de Vries, R. P., & Faraco, V. (2018). Talaromyces borbonicus, sp. nov., a novel fungus from biodegraded arundo donax with potential abilities in lignocellulose conversion. Mycopathologia, 110(2), 316-324. https://doi.org/10.1080/00275514.2018.1456835

De Bekker, C., Ohm, R. A., Evans, H. C., Brachmann, A., & Hughes, D. P. (2017). Ant-infecting Ophiocordyceps genomes reveal a high diversity of potential behavioral manipulation genes and a possible major role for enterotoxins. Scientific Reports, 7(1), [12508]. https://doi.org/10.1038/s41598-017-12863-w

Vos, A., Heijboer, A., Boschker, H. T. S., Bonnet, B., Lugones, L., & Wosten, H. (2017). Microbial biomass in compost during colonization of Agaricus bisporus. AMB Express, 7, 1-7. [12]. https://doi.org/10.1186/s13568-016-0304-y

Vos, A., Jurak, E., Pelkmans, J., Herman, K., Pels, G., Baars, J. J., Hendrix, E., Kabel, M. A., Lugones, L. G., & Wosten, H. (2017). H2O2 as a candidate bottleneck for MnP activity during cultivation of Agaricus bisporus in compost. AMB Express, 7(1), 1-9. [124]. https://doi.org/10.1186/s13568-017-0424-z

Celis Ramirez, A. M. (2017). Unraveling lipid metabolism in lipid-dependent pathogenic Malassezia yeasts. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University.

Celis Ramirez, A. M., Wösten, HAB., Triana, S., Restrepo, S., & de Cock, J. J. P. A. (2017). Malassezia spp. beyond The Mycobiota. SM Dermatology Journal, 3(3), 1-10. [1019]. https://doi.org/10.36876/smdj.1019

Aerts, D., Hauer, E. E., Ohm, R. A., Arentshorst, M., Teertstra, W. R., Phippen, C., Ram, A. F. J., Frisvad, J. C., & Wösten, H. A. B. (2017). The FlbA-regulated predicted transcription factor Fum21 of Aspergillus niger is involved in fumonisin production. Antonie van Leeuwenhoek, 111, 311-322. https://doi.org/10.1007/s10482-017-0952-1

Triana, S., de Cock, H., Ohm, R. A., Danies, G., Wösten, H. A. B., Restrepo, S., González Barrios, A. F., & Celis Ramirez, A. (2017). Lipid Metabolic Versatility in Malassezia spp. Yeasts Studied through Metabolic Modeling. Frontiers in Microbiology, 8, 1-18. [1772]. https://doi.org/10.3389/fmicb.2017.01772

Martínez-Medina, A., Appels, F. V. W., & van Wees, S. C. M. (2017). Impact of salicylic acid- and jasmonic acid-regulated defences on root colonization by Trichoderma harzianum T-78. Plant Signaling and Behavior, 12(8), [e1345404]. https://doi.org/10.1080/15592324.2017.1345404

Uehling, J., Gryganskyi, A., Hameed, K., Tschaplinski, T., Misztal, P. K., Wu, S., Desirò, A., Vande Pol, N., Du, Z., Zienkiewicz, A., Zienkiewicz, K., Morin, E., Tisserant, E., Splivallo, R., Hainaut, M., Henrissat, B., Ohm, R., Kuo, A., Yan, J., ... Bonito, G. (2017). Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens. Environmental Microbiology, 19(8), 2964-2983. https://doi.org/10.1111/1462-2920.13669

Mäkelä, M. R., Bouzid, O., Ruiz-Robleto, J., Post, H., Peng, M., Heck, A., Altelaar, M., & de Vries, R. P. (2017). Cultivation of Podospora anserina on soybean hulls results in an efficient enzyme cocktail for plant biomass hydrolysis. New Biotechnology, 37(Part B), 162-171. https://doi.org/10.1016/j.nbt.2017.02.002

Vos, A. M. (2017). Compost degradation and growth of Agaricus bisporus. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University.

Tommassen, J., & Arenas Busto, J. (2017). Biological Functions of the Secretome of Neisseria meningitidis. Frontiers in cellular and infection microbiology, 7, [256]. https://doi.org/10.3389/fcimb.2017.00256

van Eijk, M., van der Ent, C. K., Aerts, H. G., Kristensen, M. I., de Cock, H., van Dijk, A., Keijzer, B. J., & Haagsman, H. P. (2017). Novel antimicrobial peptides to fight infections in patients with cystic fibrosis. S13. https://doi.org/10.1016/S1569-1993(17)30198-4

Segers, F. J. J. (2017). Growth of indoor fungi under changing water conditions. [Doctoral thesis 2 (Research NOT UU / Graduation UU), Universiteit Utrecht]. Utrecht University.

Stöckli, M., Lin, C-W., Sieber, R., Plaza, D. F., Ohm, R. A., & Künzler, M. (2017). Coprinopsis cinerea intracellular lactonases hydrolyze quorum sensing molecules of Gram-negative bacteria. Fungal Genetics and Biology, 102, 49-62. https://doi.org/10.1016/j.fgb.2016.07.009

Benoit-Gelber, I., Gruntjes, T., Vinck, A., van Veluw, J., Wosten, H., Boeren, S., Vervoort, J. J. M., & de Vries, R. P. (2017). Mixed colonies of Aspergillus niger and Aspergillus oryzae cooperatively degrading wheat bran. Fungal Genetics and Biology, 102, 31-37. https://doi.org/10.1016/j.fgb.2017.02.006

Steinberg, G., Peñalva, M. A., Riquelme, M., Wosten, H., & Harris, S. D. (2017). Cell Biology of Hyphal Growth. Microbiology spectrum, 5(2), 1-34. https://doi.org/10.1128/microbiolspec.FUNK-0034-2016

Pérez-Ortega, J., Rodríguez, A., Ribes, E., Tommassen, J., & Arenas Busto, J. (2017). Interstrain cooperation in meningococcal biofilms: Role of autotransporters NalP and AutA. Frontiers in Microbiology, 8, [434]. https://doi.org/10.3389/fmicb.2017.00434

Celis, A. M., Vos, A., Triana, S., Medina, C. A., Escobar Salazar, N., Restrepo, S., Wosten, H., & de Cock, H. (2017). Highly efficient transformation system for Malassezia furfur and Malassezia pachydermatis using Agrobacterium tumefaciens-mediated transformation. Journal of Microbiological Methods, 134, 1-6. https://doi.org/10.1016/j.mimet.2017.01.001

Arenas Busto, J., & Tommassen, J. (2017). Meningococcal Biofilm Formation: Let's Stick Together. Trends in Microbiology, 25(2), 113-124. https://doi.org/10.1016/j.tim.2016.09.005

Tommassen - van Boxtel, R., Wattel, A. A., Arenas Busto, J., Goessens, W. H. F., & Tommassen, J. (2017). Acquisition of carbapenem resistance by plasmid-encoded-AmpC-expressing Escherichia coli. Antimicrobial Agents and Chemotherapy, 61(1), [e01413-16]. https://doi.org/10.1128/AAC.01413-16

Tegelaar, M., & Wösten, HAB. (2017). Functional distinction of hyphal compartments. Scientific Reports, 7, 1-6. [6039]. https://doi.org/10.1038/s41598-017-06422-6

Wösten, HAB., Gurr, S. J., van Doorn, J. (Ed.), Luirink, J. (Ed.), van der Oost, J. (Ed.), Oudega, B. (Ed.), Robertson , L. (Ed.), Smit, H. (Ed.), Willemsen, P. (Ed.), & Biemans , C. (Ed.) (2017). Fungi: friends and foes. In J. van der Oost (Ed.), Mighty Microbes: The amazing world of microorganisms (pp. 103-105). Stichting Microcanon.

Segers, F. J. J., van Laarhoven, K. A., Wosten, H., & Dijksterhuis, J. (2017). Growth of indoor fungi on gypsum. Journal of Applied Microbiology, 123(2), 429–435. https://doi.org/10.1111/jam.13487

Wösten, HAB., Hoekstra, W., & de Graaf, A. (2017). Schimmels; van plaag tot bouwmeester. (Biowetenschappen en maatschappij; Vol. jg. 36, No. 4). Stichting Biowetenschapen en Maatschappij.

Pelkmans, J. F., Patil, M. B., Gehrmann, T., Reinders, M. J. T., Wösten, H. A. B., & Lugones, L. G. (2017). Transcription factors of Schizophyllum commune involved in mushroom formation and modulation of vegetative growth. Scientific Reports, 7(1), 1-11. [310]. https://doi.org/10.1038/s41598-017-00483-3

Fisher, M. C., Gow, N. A. R., & Gurr, S. J. (2016). Tackling emerging fungal threats to animal health, food security and ecosystem resilience. Philosophical Transactions of the Royal Society B: Biological Sciences, 371(1709), 1-6. [20160332]. https://doi.org/10.1098/rstb.2016.0332

Bouma, T. J., van Belzen, J., Balke, T., van Dalen, J., Klaassen, P., Hartog, A. M., Callaghan, D. P., Hu, Z., Stive, M. J. F., Temmerman, S., & Herman, P. M. J. (2016). Short-term mudflat dynamics drive long-term cyclic salt marsh dynamics. Limnology and Oceanography, 61(6), 2261-2275. https://doi.org/10.1002/lno.10374

Escobar Salazar, N. (2016). Interaction of Aspergillus with alveolar Type II cells and phagocytes. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University.

Vasco Palacios, A. M. (2016). Ectomycorrhizal fungi in Amazonian tropical forests in Colombia. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University.

Gehrmann, T., Pelkmans, J. F., Lugones, L. G., Wösten, HAB., Abeel, T., & Reinders, M. J. (2016). Schizophyllum commune has an extensive and functional alternative splicing repertoire. Scientific Reports, 6, 1-11. [33640]. https://doi.org/10.1038/srep33640

Segers, F. J. J., van Laarhoven, K., Huinink, H. P., Adan, O. C., Wösten, HAB., & Dijksterhuis, J. (2016). The Indoor Fungus Cladosporium halotolerans Survives Humidity Dynamics Markedly Better than Aspergillus niger and Penicillium rubens despite Less Growth at Lowered Steady-State Water Activity. Applied and Environmental Microbiology, 82(17), 5089-5098. https://doi.org/10.1128/AEM.00510-16

Riley, R., Haridas, S., Wolfe, K. H., Lopes, M. R., Hittinger, C. T., Göker, M., Salamov, A. A., Wisecaver, J. H., Long, T. M., Calvey, C. H., Aerts, A. L., Barry, K. W., Choi, C., Clum, A., Coughlan, A. Y., Deshpande, S., Douglass, A. P., Hanson, S. J., Klenk, H-P., ... Jeffries, T. W. (2016). Comparative genomics of biotechnologically important yeasts. Proceedings of the National Academy of Sciences of the United States of America, 113(35), 9882-7. https://doi.org/10.1073/pnas.1603941113

Sánchez Fernández, E. M., Navo, C. D., Martinez Saez, N., Conçalves-Pereira, R., Somovilla Busto, V. J., Avenoza, A., Arenas Busto, J., Bernardes, G. J. L., Jiménez-Osés, G., Corzana, F., García Fernández, J. M., Mellet, C. O., & Peregrina, J. M. (2016). Tn Antigen Mimics Based on sp2-Iminosugars with Affinity for an anti-MUC1 Antibody. Organic Letters, 18(15). https://doi.org/10.1021/acs.orglett.6b01899

Pelkmans, J. F., Vos, A. M., Scholtmeijer, K., Hendrix, E., Baars, J. J., Gehrmann, T., Reinders, M. J., Lugones, L. G., & Wösten, HAB. (2016). The transcriptional regulator c2h2 accelerates mushroom formation in Agaricus bisporus. Applied Microbiology and Biotechnology, 100(16), 7151-7159. https://doi.org/10.1007/s00253-016-7574-9

Corrochano, L. M., Kuo, A., Marcet-Houben, M., Polaino, S., Salamov, A., Villalobos-Escobedo, J. M., Grimwood, J., Álvarez, M. I., Avalos, J., Bauer, D., Benito, E. P., Benoit, I., Burger, G., Camino, L. P., Cánovas, D., Cerdá-Olmedo, E., Cheng, J-F., Domínguez, A., Eliáš, M., ... Grigoriev, I. V. (2016). Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication. Current Biology, 26(12), 1577-84. https://doi.org/10.1016/j.cub.2016.04.038

Zacchetti, B., Willemse, J., Recter, B., van Dissel, D., van Wezel, GP., Wösten, HAB., & Claessen, D. (2016). Aggregation of germlings is a major contributing factor towards mycelial heterogeneity of Streptomyces. Scientific Reports, 6, 1-11. [27045]. https://doi.org/10.1038/srep27045

Nagy, L. G., Riley, R., Tritt, A., Adam, C., Daum, C., Floudas, D., Sun, H., Yadav, J. S., Pangilinan, J., Larsson, K-H., Matsuura, K., Barry, K., Labutti, K., Kuo, R., Ohm, R. A., Bhattacharya, S. S., Shirouzu, T., Yoshinaga, Y., Martin, F. M., ... Hibbett, D. S. (2016). Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities. Molecular Biology and Evolution, 33(4), 959-70. https://doi.org/10.1093/molbev/msv337

Pelkmans, J. F. (2016). Environmental signaling and regulation of mushroom formation. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University.

Pelkmans, J. F., Lugones, L. G., & Wosten, H. A. B. (2016). Fruiting Body Formation in Basidiomycetes. In The Mycota: Growth, Differentiation and Sexuality (3rd ed., Vol. 1, pp. 387-405) https://doi.org/10.1007/978-3-319-25844-7_15

Peter, M., Kohler, A., Ohm, R. A., Kuo, A., Krützmann, J., Morin, E., Arend, M., Barry, K. W., Binder, M., Choi, C., Clum, A., Copeland, A., Grisel, N., Haridas, S., Kipfer, T., LaButti, K., Lindquist, E., Lipzen, A., Maire, R., ... Martin, F. M. (2016). Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum. Nature Communications [E], 7, [12662]. https://doi.org/10.1038/ncomms12662

Jiang, Y., Duarte, A. V., van Den Brink, J., Wiebenga, A., Zou, G., Wang, C., de Vries, R. P., Zhou, Z., & Benoit, I. (2016). Enhancing saccharification of wheat straw by mixing enzymes from genetically-modified Trichoderma reesei and Aspergillus niger. Biotechnology Letters, 38(1), 65–70. https://doi.org/10.1007/s10529-015-1951-9

Sabotič, J., Ohm, R. A., & Künzler, M. (2016). Entomotoxic and nematotoxic lectins and protease inhibitors from fungal fruiting bodies. Applied Microbiology and Biotechnology, 100(1), 91-111. https://doi.org/10.1007/s00253-015-7075-2

Mosier, A. C., Miller, C. S., Frischkorn, K. R., Ohm, R. A., Li, Z., LaButti, K., Lapidus, A., Lipzen, A., Chen, C., Johnson, J., Lindquist, E. A., Pan, C., Hettich, R. L., Grigoriev, I. V., Singer, S. W., & Banfield, J. F. (2016). Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage. Frontiers in Microbiology, 7. https://doi.org/10.3389/fmicb.2016.00238

Escobar, N., Ordonez Alvarez, S., Wosten, H., Haas, P-J. A., de Cock, H., & Haagsman, H. P. (2016). Hide, Keep Quiet, and Keep Low: Properties That Make Aspergillus fumigatus a Successful Lung Pathogen. Frontiers in Microbiology, 7, 1-13. [438]. https://doi.org/10.3389/fmicb.2016.00438

van Leeuwen, M. R., Wyatt, T. T., van Doorn, T. M., Lugones, L. G., Wosten, H., & Dijksterhuis, J. (2016). Hydrophilins in the filamentous fungus Neosartorya fischeri (Aspergillus fischeri) have protective activity against several types of microbial water stress. Environmental Microbiology Reports, 8(1), 45-52. https://doi.org/10.1111/1758-2229.12349

Aaron-Morrison, A. P., Ackerman, S. A., Adams, N. G., Adler, R. F., Albanil, A., Alfaro, E. J., Allan, R., Alves, L. M., Amador, J. A., Andreassen, L. M., Arendt, A., Arévalo, J., Arndt, D. S., Arzhanova, N. M., Aschan, M. M., Azorin-Molina, C., Banzon, V., Bardin, M. U., Barichivich, J., ... Young, T. (2016). State of the climate in 2015. Bulletin of the American Meteorological Society, 97(8), S1-S275. https://doi.org/10.1175/2016BAMSStateoftheClimate.1

de Cock, J. J. P. A., van Doorn, J., van den Berg, L., Bitter, F. M., & Wösten, HAB. (2016). Veilig werken met micro-organismen, parasieten en cellen in laboratoria en andere werkruimtes. ( 4de editie. ed.) Koninklijke Nederlandse Vereniging voor Microbiologie.

Putker, F., Bos, M. P., & Tommassen, J. P. M. (2015). Transport of lipopolysaccharide to the Gram-negative bacterial cell surface. FEMS Microbiology Reviews, 39(6), 985-1002. https://doi.org/10.1093/femsre/fuv026

Patyshakuliyeva, A. (2015). Unraveling the mystery of commercial cultivation of Agaricus bisporus: plant biomass utilization and its effect on mushroom production. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University.

Hu, Z., Lenting, W., van der Wal, D., & Bouma, T. J. (2015). Continuous monitoring bed-level dynamics on an intertidal flat: Introducing novel, stand-alone high-resolution SED-sensors. Geomorphology, 245, 223-230. https://doi.org/10.1016/j.geomorph.2015.05.027

Hu, Z., Wang, Z. B., Zitman, T. J., Stive, M. J. F., & Bouma, T. J. (2015). Predicting long-term and short-term tidal flat morphodynamics using a dynamic equilibrium theory. Journal of Geophysical Research F: Earth Surface, 120(9), 1803-1823. https://doi.org/10.1002/2015JF003486

Bleichrodt, R-J., Vinck, A., Read, N. D., & Wösten, H. A. B. (2015). Selective transport between heterogeneous hyphal compartments via the plasma membrane lining septal walls of Aspergillus niger. Fungal Genetics and Biology, 82, 193-200. https://doi.org/10.1016/j.fgb.2015.06.010

Benoit, I., Zhou, M., Duarte, A. V., Downes, D. J., Todd, R. B., Kloezen, W., Post, H., Heck, A. J. R., Altelaar, A. F. M., & de Vries, R. P. (2015). Spatial differentiation of gene expression in Aspergillus niger colony grown for sugar beet pulp utilization. Scientific Reports, 5, [13592]. https://doi.org/10.1038/srep13592

Jurak, E., Patyshakuliyeva, A., De Vries, R. P., Gruppen, H., & Kabel, M. A. (2015). Compost grown agaricus bisporus lacks the ability to degrade and consume highly substituted xylan fragments. PLoS One, 10(8), [134169]. https://doi.org/10.1371/journal.pone.0134169

Benoit, I., Culleton, H., Zhou, M., DiFalco, M., Aguilar-Osorio, G., Battaglia, E., Bouzid, O., Brouwer, C. P. J. M., El-Bushari, H. B. O., Coutinho, P. M., Gruben, B. S., Hildén, K. S., Houbraken, J., Barboza, L. A. J., Levasseur, A., Majoor, E., Mäkelä, M. R., Narang, H. M., Trejo-Aguilar, B., ... De Vries, R. P. (2015). Closely related fungi employ diverse enzymatic strategies to degrade plant biomass. Biotechnology for Biofuels, 8(1), [107]. https://doi.org/10.1186/s13068-015-0285-0

Patyshakuliyeva, A., Post, H., Zhou, M., Jurak, E., Heck, A. J. R., Hildén, K. S., Kabel, M. A., Mäkelä, M. R., Altelaar, M. A. F., & De Vries, R. P. (2015). Uncovering the abilities of Agaricus bisporus to degrade plant biomass throughout its life cycle. Environmental Microbiology, 17(8), 3098-3109. https://doi.org/10.1111/1462-2920.12967

Jurak, E., Patyshakuliyeva, A., Kapsokalyvas, D., Xing, L., Van Zandvoort, M. A. M. J., De Vries, R. P., Gruppen, H., & Kabel, M. A. (2015). Accumulation of recalcitrant xylan in mushroom-compost is due to a lack of xylan substituent removing enzyme activities of Agaricus bisporus. Carbohydr Polym, 132, 359-368. [10056]. https://doi.org/10.1016/j.carbpol.2015.06.065

Hu, Z., Van Belzen, J., Van Der Wal, D., Balke, T., Wang, Z. B., Stive, M., & Bouma, T. J. (2015). Windows of opportunity for salt marsh vegetation establishment on bare tidal flats: The importance of temporal and spatial variability in hydrodynamic forcing. Journal of Geophysical Research G: Biogeosciences, 120(7), 1450-1469. https://doi.org/10.1002/2014JG002870

Wyatt, T. T., Gerwig, G. J., Kamerling, J. P., Wösten, H. A. B., & Dijksterhuis, J. (2015). Structural analysis of novel trehalose-based oligosaccharides from extremely stress-tolerant ascospores of Neosartorya fischeri (Aspergillus fischeri). Carbohydrate Research, 411, 49-55. https://doi.org/10.1016/j.carres.2015.04.006

Benoit, I., van den Esker, M. H., Patyshakuliyeva, A., Mattern, D. J., Blei, F., Zhou, M., Dijksterhuis, J., Brakhage, A. A., Kuipers, O. P., de Vries, R. P., & Kovács, Á. T. (2015). Bacillus subtilis attachment to Aspergillus niger hyphae results in mutually altered metabolism. Environmental Microbiology, 17(6), 2099-2113. https://doi.org/10.1111/1462-2920.12564

Patyshakuliyeva, A., Harm, P., Zhou, M., Jurak, E., Heck, A. J. R., Hildén, K. S., Kabel, M. A., Mäkelä, M. R., Altelaar, M. A. F., & De Vries, R. P. (2015). Unraveling the abilities of agaricus bisporus to degrade plant biomass throughout its life cycle. Acta Microbiologica et Immunologica Hungarica, 62, 198. https://doi.org/10.1556/030.62.2015

Chang, Y., Wang, S., Sekimoto, S., Aerts, A. L., Choi, C., Clum, A., LaButti, K. M., Lindquist, E. A., Yee Ngan, C., Ohm, R. A., Salamov, A. A., Grigoriev, I. V., Spatafora, J. W., & Berbee, M. L. (2015). Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants. Genome Biology and Evolution, 7(6), 1590-601. https://doi.org/10.1093/gbe/evv090

van 't Wout, E. F. A., van Schadewijk, A., van Boxtel, R., Dalton, L. E., Clarke, H. J., Tommassen, J. P. M., Marciniak, S. J., & Hiemstra, P. S. (2015). Virulence Factors of Pseudomonas aeruginosa Induce Both the Unfolded Protein and Integrated Stress Responses in Airway Epithelial Cells. PLoS Pathogens, 11(6), [e1004946]. https://doi.org/10.1371/journal.ppat.1004946

Arenas Busto, J. A., Cano, S., Nijland, R., van Dongen, V., Rutten, L., van der Ende, A., & Tommassen, J. P. M. (2015). The meningococcal autotransporter AutA is implicated in autoaggregation and biofilm formation. Environmental Microbiology, 17(4), 1321-37. https://doi.org/10.1111/1462-2920.12581

Klaubauf, S. (2015). Regulation of plant polysaccharide utilisation in Magnaporthe oryzae and other ascomycetous fungi. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://dspace.library.uu.nl/handle/1874/311177

Dhillon, B., Feau, N., Aerts, A. L., Beauseigle, S., Bernier, L., Copeland, A., Foster, A., Gill, N., Henrissat, B., Herath, P., LaButti, K. M., Levasseur, A., Lindquistb, E. A., Majoor, E., Ohm, R. A., Pangilinan, J. L., Pribowo, A., Saddler, J. N., Sakalidis, M. L., ... Hamelin, R. C. (2015). Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen. Proceedings of the National Academy of Sciences of the United States of America, 112(11), 3451-3456. https://doi.org/10.1073/pnas.1424293112

Floudas, D., Held, B. W., Riley, R., Nagy, L. G., Koehler, G., Ransdell, A. S., Younus, H., Chow, J., Chiniquy, J., Lipzen, A., Tritt, A., Sun, H., Haridas, S., LaButti, K. M., Ohm, R. A., Kües, U., Blanchette, R. A., Grigoriev, I. V., Minto, R. E., & Hibbett, D. S. (2015). Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii. Fungal Genetics and Biology, 76, 78-92. https://doi.org/10.1016/j.fgb.2015.02.002

Bleichrodt, R-J., Hulsman, M., Wosten, H. A. B., & Reinders, M. J. T. (2015). Switching from a unicellular to multicellular organization in an Aspergillus niger hypha. MBio [E], 6(2), 1-10. [e00111-15]. https://doi.org/10.1128/mBio.00111-15

Braem, S. G. E., Rooijakkers, S. H. M., van Kessel, K. P. M., de Cock, H., Wosten, H., van Strijp, J. A. G., & Haas, P-J. A. (2015). Effective Neutrophil Phagocytosis of Aspergillus fumigatus Is Mediated by Classical Pathway Complement Activation. Journal of Innate Immunity, 7(4), 364-374. https://doi.org/10.1159/000369493

Wyatt, T. T., Golovina, E. A., van Leeuwen, R., Hallsworth, J. E., Wösten, H. A. B., & Dijksterhuis, J. (2015). A decrease in bulk water and mannitol and accumulation of trehalose and trehalose-based oligosaccharides define a two-stage maturation process towards extreme stress resistance in ascospores of Neosartorya fischeri (Aspergillus fischeri). Environmental Microbiology, 17(2), 383-94. https://doi.org/10.1111/1462-2920.12557

Wösten, H. A. B., & Scholtmeijer, K. (2015). Applications of hydrophobins: current state and perspectives. Applied Microbiology and Biotechnology, 99(4), 1587-97. https://doi.org/10.1007/s00253-014-6319-x

Wyatt, T. T., van Leeuwen, M. R., Golovina, E. A., Hoekstra, F. A., Kuenstner, E. J., Palumbo, E. A., Snyder, N. L., Visagie, C., Verkennis, A., Hallsworth, J. E., Wösten, H. A. B., & Dijksterhuis, J. (2015). Functionality and prevalence of trehalose-based oligosaccharides as novel compatible solutes in ascospores of Neosartorya fischeri (Aspergillus fischeri) and other fungi. Environmental Microbiology, 17(2), 395-411. https://doi.org/10.1111/1462-2920.12558

Paltansing, S., Kraakman, M., van Boxtel, H. A. M., Kors, I., Wessels, E., Goessens, W., Tommassen, J. P. M., & Bernards, A. (2015). Increased expression levels of chromosomal AmpC β-lactamase in clinical Escherichia coli isolates and their effect on susceptibility to extended-spectrum cephalosporins. Microbial Drug Resistance, 21(1), 7-16. https://doi.org/10.1089/mdr.2014.0108

Wang, F., Krijgsheld, P., Hulsman, M., de Bekker, C., Müller, W. H., Reinders, M., de Vries, R. P., & Wosten, H. (2015). FluG affects secretion in colonies of Aspergillus niger. Antonie van Leeuwenhoek International Journal of General and Molecular Microbiology, 107(1), 225-240. https://doi.org/10.1007/s10482-014-0321-2

Wang, F., Dijksterhuis, J., Wyatt, T., Wosten, H., & Bleichrodt, R-J. (2015). VeA of Aspergillus niger increases spore dispersing capacity by impacting conidiophore architecture. Antonie van Leeuwenhoek International Journal of General and Molecular Microbiology, 107(1), 187-199. https://doi.org/10.1007/s10482-014-0316-z

Triana, S., González, A., Ohm, R. A., Wosten, H., de Cock, H., Restrepo, S., & Celis, A. (2015). Draft Genome Sequence of the Animal and Human Pathogen Malassezia pachydermatis Strain CBS 1879. Genome Announcements, 3(5), 1-2. [e01197-15]. https://doi.org/10.1128/genomeA.01197-15

Bos, M. P., Boxtel, R. T., & Tommassen, J. P. M. (2015). Experimental Methods for Studying the BAM Complex in Neisseria meningitidis. Methods in Molecular Biology, 1329, 33-49. https://doi.org/10.1007/978-1-4939-2871-2_3

Arenas Busto, J. A., de Maat, V., Caton Alcubierre, L., Krekorian, M., Herrero, J. C., Ferrara, F., & Tommassen, J. P. M. (2015). Fratricide activity of MafB protein of N. meningitidis strain B16B6. BMC Microbiology [E], 15(156). https://doi.org/10.1186/s12866-015-0493-6

de Bekker, C., Ohm, R. A., Loreto, R. G., Sebastian, A., Albert, I., Merrow, M., Brachmann, A., & Hughes, D. P. (2015). Gene expression during zombie ant biting behavior reflects the complexity underlying fungal parasitic behavioral manipulation. BMC Genomics, 16(1), 620. https://doi.org/10.1186/s12864-015-1812-x

Kowalczyk, J. E., Gruben, B. S., Battaglia, E., Wiebenga, A., Majoor, E., & de Vries, R. P. (2015). Genetic Interaction of Aspergillus nidulans galR, xlnR and araR in Regulating D-Galactose and L-Arabinose Release and Catabolism Gene Expression. PLoS One, 10(11), [e0143200]. https://doi.org/10.1371/journal.pone.0143200

Kourist, R., Bracharz, F., Lorenzen, J., Kracht, O. N., Chovatia, M., Daum, C., Deshpande, S., Lipzen, A., Nolan, M., Ohm, R. A., Grigoriev, I. V., Sun, S., Heitman, J., Brück, T., & Nowrousian, M. (2015). Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems. MBio [E], 6(4), e00918. https://doi.org/10.1128/mBio.00918-15

Tommassen, J. P. M., & Wosten, H. A. B. (2015). Microbial cell surfaces and secretion systems. In B. Lugtenberg (Ed.), Principles of plant-microbe interactions: Microbes for sustainable agriculture (pp. 33-44). Springer International Publishing. https://doi.org/10.1007/978-3-319-08575-3_6

Berendsen, R. L., van Verk, M. C., Stringlis, I. A., Zamioudis, C., Tommassen, J., Pieterse, C. M. J., & Bakker, P. A. H. M. (2015). Unearthing the genomes of plant-beneficial Pseudomonas model strains WCS358, WCS374 and WCS417. BMC Genomics, 16, [539]. https://doi.org/10.1186/s12864-015-1632-z