Publications

2025

Ijadpanahsaravi, M. (2025). Heterogeneity in spore germination dynamics in Aspergillus niger. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/3241
Safeer, A. A., Kleijburg, F. E. L., Wosten, H. A. B., & Baldus, M. (2025). Solid-state NMR spectroscopy reveals unique properties of Trichoderma harzianum  cell wall components. Cell Surface, 14, Article 100156. https://doi.org/10.1016/j.tcsw.2025.100156
van Maanen, M. H. (2025). Fungal warfare: Unravelling the defence mechanisms of mushroom-forming fungi. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/3209
Sinninghe Damsté, J. S., Villanueva, L., & Pukall, R. (2025). A chemotaxonomic and phylogenomic re-evaluation of the genus Alicyclobacillus: A proposal for reclassification of about half of the species into the new genus, Paenalicyclobacillus gen. nov., with an emended description of the genus Alicyclobacillus, and recognition that the names Alicyclobacillus tengchongensis and Alicyclobacillus montanus are later heterotypic synonyms of Alicyclobacillus tolerans. Systematic and Applied Microbiology, 48(6). https://doi.org/10.1016/j.syapm.2025.126651
Torres, J. P. M., Wösten, H. A. B., & Lugones, L. G. (2025). Protoplasting of Aspergillus niger using Trichoderma harzianum culture medium after growth on cell walls of the target fungus. Journal of Microbiological Methods, 238, Article 107252. https://doi.org/10.1016/j.mimet.2025.107252
d'Errico, A., van den Brandhof, J. G., Bogomolova, A., & Wösten, H. A. B. (2025). Strongest untreated mycelium materials produced by Schizophyllum commune dikaryons. Mircen Journal of Applied Microbiology and Biotechnology, 41(10), Article 403. https://doi.org/10.1007/s11274-025-04582-6
Capador-Barreto, H. D., van Iersel, G., Durling, M. B., Stenlid, J., Karlsson, B., & Elfstrand, M. (2025). Genotype-by-genotype interactions reveal transcription patterns underlying resistance responses in Norway spruce to Heterobasidion annosum s.s. BMC Plant Biology, 25(1), 1-15. Article 1326. https://doi.org/10.1186/s12870-025-07438-1
Li, B., Zhang, X., Paerl, H., Tefsen, B., & Wells, M. (2025). Making Waves: Emphasizing Integrated Research on Harmful Algal Blooms Over Single-Species Laboratory Studies. Water Research, 285, Article 124051. https://doi.org/10.1016/j.watres.2025.124051
Herman, K. C., van Iersel, G., Dijksterhuis, J., Wösten, H. A. B., & Bleichrodt, R. J. (2025). Agaricus bisporus mushrooms are supplied with water through both apoplastic as well as symplastic routes from distinct substrate layers. Fungal Biology, 129(6), Article 101623. https://doi.org/10.1016/j.funbio.2025.101623
d'Errico, A., Schröpfer, M., Mondschein, A., & Wösten, H. A. B. (2025). Characterization of the surface charge and reactivity of Schizophyllum commune mycelium material. Colloids and Surfaces. B, Biointerfaces, 254, Article 114852. https://doi.org/10.1016/j.colsurfb.2025.114852
Alarcon Rios, A. C., Zwep, L. B., Vriesendorp, B., Knibbe, C. A. J., Ciofu, O., Liakopoulos, A., Aulin, L. B. S., Rozen, D. E., & van Hasselt, J. G. C. (2025). Colistin resistance dynamics in Pseudomonas aeruginosa under biofilm and planktonic growth. Antimicrobial Agents and Chemotherapy, 69(10), Article e0042125. https://doi.org/10.1128/aac.00421-25
Zhao, L. (2025). Revision of Bionectriaceae and acremonium-like fungi in Hypocreales. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/3082
de Vries, R. P., Wiebenga, A., Aguilar Osorio, G., Aguilar Pontes, M. V., Battaglia, E., Benocci, T., Benoit Gelber, I., Bouzid, O., Casado Lopez, S., Coconi Linares, N., Debets, A. J. M., de Jong, J. F. J., Drula, E., Falkoski, D., Grijpstra, J., Gruben, B. S., Klaubauf, S., Khosravi, C., Kowalczyk, J. E., ... Robert, V. (2025). The FUNG-GROWTH database: linking fungal phenotype to genome. Microbiology Resource Announcements, 14(9), Article e0037825. https://doi.org/10.1128/mra.00378-25
Morán Torres, J. P., Lyu, J., Chen, X., Klaas, A. M., Vonk, P. J., Lugones, L. G., de Cock, H., & Wösten, H. A. B. (2025). Single and combinatorial gene inactivation in Aspergillus niger using selected as well as genome-wide gRNA library pools. Microbiological Research, 298, 1-11. Article 128204. https://doi.org/10.1016/j.micres.2025.128204
Kleijburg, F. E. L., & Wösten, H. A. B. (2025). The versatility of Schizophyllum commune in nature and application. Fungal Biology Reviews, 53, Article 100431. https://doi.org/10.1016/j.fbr.2025.100431
Bishoyi, A. K., van Neer, J., Bahri, S., Lorenz, S., de Cock, H., & Baldus, M. (2025). Solid-state NMR Reveals Reorganization of the Aspergillus fumigatus Cell Wall Due to a Host-Defence Peptide. Angewandte Chemie-International Edition, 64(35), Article e202509012. https://doi.org/10.1002/anie.202509012
d'Errico, A., Land, C. A., Wissing, M., Richrath, R. B., & Wösten, H. A. B. (2025). Polyglyceryl-4 caprate and polyglycerol-3 provide low mobility and enhance ductility in Schizophyllum commune mycelium materials. Colloids and Surfaces A: Physicochemical and Engineering Aspects, 719, Article 137055. https://doi.org/10.1016/j.colsurfa.2025.137055
Beckerson, W. C. (2025). Neuroparasitology: Fungal effectors induce feeding in zombie silkworms. Current Biology, 35(15), R760-R762. https://doi.org/10.1016/j.cub.2025.06.069
Dopp, J., & de Bekker, C. (2025). Insect circadian plasticity as a proposed target for the expression of parasite extended phenotypes. Npj biological timing and sleep, 2(1), Article 29. https://doi.org/10.1038/s44323-025-00046-0
van den Brandhof, J. G., Hansen, N., Hou, C., Broers, S. C., Tegelaar, M., & Wösten, H. A. B. (2025). Characterization of pure mycelium materials from different mushroom-forming fungi. antonie van leeuwenhoek, 118(9), Article 121. https://doi.org/10.1007/s10482-025-02133-5
Doval, R. L., Müller, A., Brown, D. W., Johnson, D., Quandt, C. A., Barry, K., Clum, A., Hundley, H., LaButti, K., Lipzen, A., Mondo, S. J., Ohm, R. A., Pangilinan, J. L., Riley, R. W., Steindorff, A. S., Wang, M., Drula, E., Henrissat, B., Bushley, K., ... de Vries, R. P. (2025). A Comparison of the Biotechnological Potential of Marine and Terrestrial Species of Two Orders of Sordariomycete Fungi. Marine Biotechnology, 27(4), Article 103. https://doi.org/10.1007/s10126-025-10484-3
Beijen, E. P. W. (2025). Regulation of the immune system of the mushroom Schizophyllum commune. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/2929
Ortega Exposito, F., Rovers, I., Peuling, S., Roccio, S., John, N., Pelkmans, J., Wosten, H., van den Broek, S., & Huijben, F. (2025). Mythic - Mycelium Materials for Thermal Insulation in Construction. In Bio-Based Building Materials: Proceedings of ICBBM 2025 (pp. 70-90). (RILEM Bookseries; Vol. 61). Springer. https://doi.org/10.1007/978-3-031-92874-1_6
Jumbam, B., Zasada, I. A., Bensch, K., Crous, P. W., & Aime, M. C. (2025). A taxonomic revision of Aureobasidium (Saccotheciaceae, Dothideales) with new species, new names, and typifications. Persoonia: Molecular Phylogeny and Evolution of Fungi, 54, 147-195. https://doi.org/10.3114/persoonia.2025.54.05
Zhao, L., Groenewald, J. Z., Hou, L. W., Summerbell, R. C., & Crous, P. W. (2025). Bionectriaceae: a poorly known family of hypocrealean fungi with major commercial potential. Studies in Mycology, 111(1), 115-198. https://doi.org/10.3114/sim.2025.111.04
Crous, P. W., Catcheside, D. E. A., Catcheside, P. S., Alfenas, A. C., Alfenas, R. F., Barreto, R. W., Lebel, T., Balashov, S., Broadbridge, J., Jurjević, Ž., De la Peña-Lastra, S., Hoffmann, R., Mateos, A., Riebesehl, J., Shivas, R. G., Soliz Santander, F. F., Tan, Y. P., Altés, A., Bandini, D., ... Groenewald, J. Z. (2025). Fungal Planet description sheets: 1781-1866. Persoonia: Molecular Phylogeny and Evolution of Fungi, 54, 327-587. https://doi.org/10.3114/persoonia.2025.54.10
Beijen, E. P. W., van Maanen, M. H., van den Bergh, E. S., Brouns, R., Marian, I. M., de Vries, T. J., Vonk, P. J., & Ohm, R. A. (2025). Transcription factors Fst8, Ftr3 and Gat1 are regulators of the immune system of the mushroom Schizophyllum commune. Fungal Genetics and Biology, 179, Article 103987. https://doi.org/10.1016/j.fgb.2025.103987
d'Errico, A., Vonk, P. J., Wösten, H. A. B., & Lugones, L. G. (2025). Transposition of a non-autonomous element into the Gβ gene of Schizophyllum commune causes the streak mutation. Fungal Genetics and Biology, 179, 1-9. Article 104007. https://doi.org/10.1016/j.fgb.2025.104007
d'Errico, A. (2025). Pure mycelium materials from Schizophyllum commune. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/2879
Schuster, M., Kilaru, S., Wösten, H. A. B., & Steinberg, G. (2025). Secretion and endocytosis in subapical cells support hyphal tip growth in the fungus Trichoderma reesei. Nature Communications, 16(1), 1-18. Article 4402. https://doi.org/10.1038/s41467-025-59606-4
Perlin, M. H., Poulin, R., & de Bekker, C. (2025). Invasion of the four kingdoms: the parasite journey across plant and non-plant hosts. Biological Reviews, 100(2), 936-968. https://doi.org/10.1111/brv.13169
van Brenk, B., Kleijburg, F., Kemperman, A., van der Meer, W., & Wosten, H. A. B. (2025). Fungal waste treats water waste: enzymatic and non-enzymatic removal of organic micropollutants with spent mushroom substrate of Agaricus bisporus. New Biotechnology, 85, 154. https://doi.org/10.1016/j.nbt.2024.08.167
Sandoval-Denis, M., Costa, M. M., Broders, K., Becker, Y., Maier, W., Yurkov, A., Kermode, A., Buddie, A. G., Ryan, M. J., Schumacher, R. K., Groenewald, J. Z., & Crous, P. W. (2025). An integrative re-evaluation of the Fusarium sambucinum species complex. Studies in Mycology, 110(1), 1-110. https://doi.org/10.3114/sim.2025.110.01
Boukhchtaber, D. C., von Meijenfeldt, F. A. B., Sahonero Canavesi, D. X., Dorhout, D., Bale, N. J., Hopmans, E. C., & Villanueva, L. (2025). Discovering Hidden Archaeal and Bacterial Lipid Producers in a Euxinic Marine System. Environmental Microbiology, 27(3), Article e70054. https://doi.org/10.1111/1462-2920.70054
Kleijburg, F. E. L. (2025). Functions of cell wall components of Schizophyllum commune. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/2684
Case, N. T., Gurr, S. J., Fisher, M. C., Blehert, D. S., Boone, C., Casadevall, A., Chowdhary, A., Cuomo, C. A., Currie, C. R., Denning, D. W., Ene, I. V., Fritz-Laylin, L. K., Gerstein, A. C., Gow, N. A. R., Gusa, A., Iliev, I. D., James, T. Y., Jin, H., Kahmann, R., ... Segre, J. A. (2025). Fungal impacts on Earth’s ecosystems. Nature, 638(8049), 49-57. Article 321. https://doi.org/10.1038/s41586-024-08419-4
Gallego, R. P., von Meijenfeldt, F. A. B., Bale, N. J., Sinninghe Damsté, J. S., & Villanueva, L. (2025). Emergence and evolution of heterocyte glycolipid biosynthesis enabled specialized nitrogen fixation in cyanobacteria. Proceedings of the National Academy of Sciences of the United States of America, 122(5), Article e2413972122. https://doi.org/10.1073/pnas.2413972122
Hecht, K., Haan, L., Wösten, H. A. B., Hamel, P., Swaminathan, S., & Jain, A. (2025). Rocks and walls: Biodiversity and temperature regulation of natural cliffs and vertical greenery systems. Building and Environment, 268, Article 112308. https://doi.org/10.1016/j.buildenv.2024.112308
Vermeulen, S., Forsman, A. M., & de Bekker, C. (2025). Consequences of “zombie-making” and generalist fungal pathogens on carpenter ant microbiota. Current Research in Insect Science, 7, Article 100102. https://doi.org/10.1016/j.cris.2024.100102
Liebregts, J., van der Velden, L., Fonseca-Fernández, A. L., Ramírez, A. M. C., & de Cock, H. (2025). Lipid-dependent growth of Malassezia spp. in defined medium with single fatty acids. FEMS Yeast Research, 25, Article foaf043. https://doi.org/10.1093/femsyr/foaf043
Richter, N., Villanueva, L., Hopmans, E. C., Bale, N. J., Sinninghe Damsté, J. S., & Rush, D. (2025). Methanotroph-methylotroph lipid adaptations to changing environmental conditions. Frontiers in Microbiology, 16, Article 1532719. https://doi.org/10.3389/fmicb.2025.1532719

2024

Koumans, C. I. M., Tandar, S. T., Liakopoulos, A., & van Hasselt, J. G. C. (2024). Interspecies interactions alter the antibiotic sensitivity of Pseudomonas aeruginosa. Microbiology spectrum, 12(12), Article e02012-24. https://doi.org/10.1128/spectrum.02012-24
Barreto, G. G., Souza-Motta, C. M., Silva, G. A., Groenewald, J. Z., Crous, P. W., & Bezerra, J. D. P. (2024). Meristematic and meristematic-like fungi in Dothideomycetes. Fungal Systematics and Evolution, 14, 77-88. https://doi.org/10.3114/fuse.2024.14.05
van Ingen-Buijs, V. A., van Westerhoven, A. C., Skiadas, P., Zuijdgeest, X. C. L., Haridas, S., Daum, C., Duffy, K., Guo, J., Hundley, H., LaButti, K., Lipzen, A., Pangilinan, J., Riley, R., Wang, J., Yan, M., Martin, F., Barry, K., Grigoriev, I. V., Groenewald, J. Z., ... Seidl, M. F. (2024). Phyllosticta paracitricarpa is synonymous with the EU quarantine fungus P. Citricarpa based on phylogenomic analyses. Fungal Genetics and Biology, 175, Article 103925. https://doi.org/10.1016/j.fgb.2024.103925
Beijen, E. P. W., van Maanen, M. H., Marian, I. M., Klusener, J. X., van Roosmalen, E., Herman, K. C., Koster, M. C., & Ohm, R. A. (2024). Transcriptomics reveals the regulation of the immune system of the mushroom-forming fungus Schizophyllum commune during interaction with four competitors. Microbiological Research, 289, Article 127929. https://doi.org/10.1016/j.micres.2024.127929
Tamby, A., Sahonero-Canavesi, D. X., & Villanueva, L. (2024). Exploring robustness of hybrid membranes under high hydrostatic pressure and temperature. Frontiers in Microbiology, 15, Article 1470844. https://doi.org/10.3389/fmicb.2024.1470844
Varma, D., Villanueva, L., Bale, N. J., Offre, P., Reichart, G. J., & Schouten, S. (2024). Controls on the composition of hydroxylated isoprenoidal glycerol dialkyl glycerol tetraethers (isoGDGTs) in cultivated ammonia-oxidizing Thaumarchaeota. Biogeosciences, 21(21), 4875-4888. https://doi.org/10.5194/bg-21-4875-2024
Keating, C., Fiege, K., Diender, M., Sousa, D. Z., & Villanueva, L. (2024). Microbial single-cell applications under anoxic conditions. Applied and Environmental Microbiology, 90(11). https://doi.org/10.1128/aem.01321-24
Marian, I. M. (2024). Leveraging the heterogeneity between strains of Schizophyllum commune for functional genomics. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/2484
Chen, X., Moran Torres, J. P., Tedjai, S. V. K., Lugones, L. G., & Wösten, H. A. B. (2024). Functional analysis of FlbA-regulated transcription factor genes in Aspergillus niger using a multiplexed CRISPRoff system. International Journal of Biological Macromolecules, 277(Pt 2), Article 134326. https://doi.org/10.1016/j.ijbiomac.2024.134326
Costa, M. M., Sandoval-Denis, M., Moreira, G. M., Kandemir, H., Kermode, A., Buddie, A. G., Ryan, M. J., Becker, Y., Yurkov, A., Maier, W., Groenewald, J. Z., Pfenning, L. H., & Crous, P. W. (2024). Known from trees and the tropics: new insights into the<i> Fusarium</i><i> lateritium</i> species complex. Studies in Mycology, 109(1), 403-450. https://doi.org/10.3114/sim.2024.109.06
van Roosmalen, E., & de Bekker, C. (2024). Mechanisms Underlying Ophiocordyceps Infection and Behavioral Manipulation of Ants: Unique or Ubiquitous? Annual Review of Microbiology, 78(1), 575-593. https://doi.org/10.1146/annurev-micro-041522-092522
Chen, X. (2024). Genes involved in growth and sporulation in Aspergillus niger. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/2435
Landeta, C., Medina-Ortiz, D., Escobar, N., Valdez, I., González-Troncoso, M. P., Álvares-Saravia, D., Aldridge, J., Gómez, C., & Lienqueo, M. E. (2024). Integrative workflows for the characterization of hydrophobin and cerato-platanin in the marine fungus Paradendryphiella salina. Archives of Microbiology, 206(9), Article 385. https://doi.org/10.1007/s00203-024-04087-0
d'Errico, A., Schröpfer, M., Mondschein, A., Safeer, A. A., Baldus, M., & Wösten, H. A. B. (2024). Cross-linking impacts the physical properties of mycelium leather alternatives by targeting hydroxyl groups of polysaccharides and amino groups of proteins. Heliyon, 10(16), Article e36263. https://doi.org/10.1016/j.heliyon.2024.e36263
Wösten, H. A. B., & Bleichrodt, R.-J. (2024). ENHANCED SUBSTRATE FOR MUSHROOMS. (Patent No. WO2024175670).
Khonsanit, A., Thanakitpipattana, D., Mongkolsamrit, S., Kobmoo, N., Phosrithong, N., Samson, R. A., Crous, P. W., & Luangsa-ard, J. J. (2024). A phylogenetic assessment of Akanthomyces sensu lato in Cordycipitaceae (Hypocreales, Sordariomycetes): introduction of new genera, and the resurrection of Lecanicillium. Fungal Systematics and Evolution, 14, 271-305. https://doi.org/10.3114/fuse.2024.14.17
Marian, I. M., Valdes, I. D., Hayes, R. D., LaButti, K., Duffy, K., Chovatia, M., Johnson, J., Ng, V., Lugones, L. G., Wösten, H. A. B., Grigoriev, I. V., & Ohm, R. A. (2024). High phenotypic and genotypic plasticity among strains of the mushroom-forming fungus Schizophyllum commune. Fungal Genetics and Biology, 173, Article 103913. https://doi.org/10.1016/j.fgb.2024.103913
van den Brandhof, J. G., Wösten, H. A. B., & Tegelaar, M. (2024). Modulation of flexibility and shape recovery of living Schizophyllum commune pure mycelium material by hydration. Materials Today Communications, 40, Article 109784. https://doi.org/10.1016/j.mtcomm.2024.109784
Mongkolsamrit, S., Noisripoom, W., Tasanathai, T., Khonsanit, A., Thanakitpipattana, D., Lamlertthon, S., Himaman, W., Crous, P. W., Stadler, M., & Luangsa-ard, J. J. (2024). Uncovering cryptic species diversity of Ophiocordyceps (Ophiocordycipitaceae) associated with Coleoptera from Thailand. Fungal Systematics and Evolution, 14, 223-250. https://doi.org/10.3114/fuse.2024.14.15
ICTF Yeast Working Grp (2024). Cultures as types and the utility of viable specimens for fungal nomenclature. IMA Fungus, 15(1), 1-12. Article 20. https://doi.org/10.1186/s43008-024-00155-8
Vonk, P. J., van der Poel, M. J. P., Niemeijer, Z. E., & Ohm, R. A. (2024). The regulatory network of the White Collar complex during early mushroom development in Schizophyllum commune. Microbiological Research, 284, Article 127736. https://doi.org/10.1016/j.micres.2024.127736
Groenewald, J. Z., Chen, Y. Y., Zhang, Y., Roux, J., Shin, H. D., Shivas, R. G., Summerell, B. A., Braun, U., Alfenas, A. C., Ujat, A. H., Nakashima, C., & Crous, P. W. (2024). Species diversity in Pseudocercospora. Fungal Systematics and Evolution, 13(1), 29-89. https://doi.org/10.3114/fuse.2024.13.03
Crous, P. W., Dijksterhuis, J., Figge, M., & Sandoval-Denis, M. (2024). Mjuua agapanthi gen. et sp. nov., a biotrophic mycoparasite of Fusarium spp. Fungal Systematics and Evolution, 13(1), 153-162. https://doi.org/10.3114/fuse.2024.13.09
van Brenk, B., Kruidhof, L., Kemperman, A. J. B., van der Meer, W. G. J., & Wösten, H. A. B. (2024). Discoloration of textile dyes by spent mushroom substrate of Agaricus bisporus. Bioresource Technology, 402, Article 130807. https://doi.org/10.1016/j.biortech.2024.130807
Ijadpanahsaravi, M., & Wösten, HAB. (2024). Germination strategies of stress resistant Aspergillus conidia. Current Opinion in Food Science, 57, Article 101169. https://doi.org/10.1016/j.cofs.2024.101169
Canoy, T. S., Wiedenbein, E. S., Bredie, W. L. P., Meyer, A. S., Wösten, H. A. B., & Nielsen, D. S. (2024). Solid-State Fermented Plant Foods as New Protein Sources. Annual review of food science and technology, 15(1), 189-210. https://doi.org/10.1146/annurev-food-060721-013526
Chen, X., Moran Torres, J. P., Jan Vonk, P., Damen, J. M. A., Reiding, K. R., Dijksterhuis, J., Lugones, L. G., & Wösten, H. A. B. (2024). The pleiotropic phenotype of FlbA of Aspergillus niger is explained in part by the activity of seven of its downstream-regulated transcription factors. Fungal Genetics and Biology, 172, Article 103894. https://doi.org/10.1016/j.fgb.2024.103894
Bhunjun, C. S., Chen, Y. J., Phukhamsakda, C., Boekhout, T., Groenewald, J. Z., McKenzie, E. H. C., Francisco, E. C., Frisvad, J. C., Groenewald, M., Hurdeal, V. G., Luangsa-Ard, J., Perrone, G., Visagie, C. M., Bai, F. Y., Błaszkowski, J., Braun, U., de Souza, F. A., de Queiroz, M. B., Dutta, A. K., ... Crous, P. W. (2024). What are the 100 most cited fungal genera? Studies in Mycology, 108(1), 1-412. https://doi.org/10.3114/sim.2024.108.01
Angulo, V., Bleichrodt, R.-J., Dijksterhuis, J., Erktan, A., Hefting, M. M., Kraak, B., & Kowalchuk, G. A. (2024). Enhancement of soil aggregation and physical properties through fungal amendments under varying moisture conditions. Environmental Microbiology, 26(5), Article e16627. https://doi.org/10.1111/1462-2920.16627
Diaz-Recio Lorenzo, C., Tran Lu Y, A., Brunner, O., Arbizu, P. M., Jollivet, D., Laurent, S., & Gollner, S. (2024). Highly structured populations of copepods at risk to deep-sea mining: Integration of genomic data with demogenetic and biophysical modelling. Molecular Ecology, 33(9), Article e17340. https://doi.org/10.1111/mec.17340
Ferro, L. O., Bezerra, J. D. P., da Silva, T. M., de Oliveira, C. S., dos S. Nascimento, S., Paiva, L. M., Fan, X., Crous, P. W., & Souza-Motta, C. M. (2024). Endophytic Diaporthe species from Brazil. Fungal Systematics and Evolution, 14, 251-269. https://doi.org/10.3114/fuse.2024.14.16
van Brenk, B., Kleijburg, F. E. L., Kemperman, A. J. B., van der Meer, W. G. J., & Wösten, H. A. B. (2024). Enzymatic and non-enzymatic removal of organic micropollutants with spent mushroom substrate of Agaricus bisporus. Applied Microbiology and Biotechnology, 108(1), Article 301. https://doi.org/10.1007/s00253-024-13132-3
Herman, K. C. (2024). Translocation of water and nutrients during growth and fructification of Agaricus bisporus. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/2231
Kidd, S. E., Hagen, F., Halliday, C. L., Abdolrasouli, A., Boekhout, T., Crous, P. W., Ellis, D. H., Elvy, J., Forrest, G. N., Groenewald, M., Hahn, R. C., Houbraken, J., Rodrigues, A. M., Scott, J., Sorrell, T. C., Summerbell, R. C., Tsui, C. K. M., Yurkov, A., & Chen, S. C. A. (2024). Inconsistencies within the proposed framework for stabilizing fungal nomenclature risk further confusion. Journal of Clinical Microbiology, 62(4), Article e0157023. https://doi.org/10.1128/jcm.01570-23
Livne, A., Pearlmutter, D., Gal, E., & Wösten, H. A. B. (2024). Increased CO2 fixation and reduced embodied energy of mycelium bio-composite materials grown on a mixed substrate over diurnal temperature cycles. Construction and Building Materials, 421, Article 135566. https://doi.org/10.1016/j.conbuildmat.2024.135566
Chen, X., Moran Torres, J. P., & Wösten, H. A. B. (2024). The role of the Flb protein family in the life cycle of Aspergillus niger. Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology, 117(1), Article 58. https://doi.org/10.1007/s10482-024-01957-x
Beijen, EPW., & Ohm, RA. (2024). Genome annotations for the ascomycete fungi Trichoderma harzianum, Trichoderma aggressivum, and Purpureocillium lilacinum. Microbiology Resource Announcements, 13(3). https://doi.org/10.1128/mra.01153-23
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Rensink, S., van Nieuwenhuijzen, E. J., Sailer, M. F., Struck, C., & Wösten, H. A. B. (2024). Use of Aureobasidium in a sustainable economy. Applied Microbiology and Biotechnology, 108(1), Article 202. https://doi.org/10.1007/s00253-024-13025-5
Egas, RA., Sahonero-Canavesi, DX., Bale, NJ., Koenen, M., Yildiz, C., Villanueva, L., Sousa, DZ., & Sánchez-Andrea, I. (2024). Acetic acid stress response of the acidophilic sulfate reducer Acididesulfobacillus acetoxydans. Environmental Microbiology, 26(2), Article e16565. https://doi.org/10.1111/1462-2920.16565
Ijadpanahsaravi, M., Snoek, L. B., Teertstra, W. R., & Wösten, H. A. B. (2024). The impact of inter- and intra-species spore density on germination of the food spoilage fungus Aspergillus niger. International Journal of Food Microbiology, 410, 1-10. Article 110495. https://doi.org/10.1016/j.ijfoodmicro.2023.110495
van Brenk, B. (2024). Waste treating waste: Organic micropollutant removal from water by Agaricus bisporus spent mushroom substrate. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/2096
Perez, C. S., Jongh, R. D., Jonkergouw, R., Pelayo, P., Balskus, E. P., Zomer, A., & Strijbis, K. (2024). Prevotella timonensis degrades the vaginal epithelial glycocalyx through high fucosidase and sialidase activities. (pp. 1-26). bioRxiv. https://doi.org/10.1101/2024.01.09.574844
Ding, S., von Meijenfeldt, F. A. B., Bale, N. J., Sinninghe Damsté, J. S., & Villanueva, L. (2024). Production of structurally diverse sphingolipids by anaerobic marine bacteria in the euxinic Black Sea water column. ISME Journal, 18(1), Article wrae153. https://doi.org/10.1093/ismejo/wrae153

2023

Kleijburg, F. E. L., Safeer, A. A., Baldus, M., & Wösten, H. A. B. (2023). Binding of micro-nutrients to the cell wall of the fungus Schizophyllum commune. The Cell Surface, 10, Article 100108. https://doi.org/10.1016/j.tcsw.2023.100108
Pérez-Ortega, J., Van boxtel, R., Plisnier, M., Ingels, D., Devos, N., Sijmons, S., & Tommassen, J. (2023). Biosynthesis of the Inner Core of Bordetella pertussis Lipopolysaccharides: Effect of Mutations on LPS Structure, Cell Division, and Toll-like Receptor 4 Activation. International Journal of Molecular Sciences, 24(24), 1-23. Article 17313. https://doi.org/10.3390/ijms242417313
Will, I., Attardo, G. M., & de Bekker, C. (2023). Multiomic interpretation of fungus-infected ant metabolomes during manipulated summit disease. Scientific Reports, 13(1), 1-19. Article 14363. https://doi.org/10.1038/s41598-023-40065-0
Adamatzky, A., Schunselaar, E., Wösten, H. A. B., & Ayres, P. (2023). Multiscalar electrical spiking in Schizophyllum commune. Scientific Reports, 13(1), Article 12808. https://doi.org/10.1038/s41598-023-40163-z
Will, I., Beckerson, W. C., & de Bekker, C. (2023). Using machine learning to predict protein-protein interactions between a zombie ant fungus and its carpenter ant host. Scientific Reports, 13(1), 1-16. Article 13821. https://doi.org/10.1038/s41598-023-40764-8
Tandar, S. T., Aulin, L. B. S., Leemkuil, E. M. J., Liakopoulos, A., & van Hasselt, J. G. C. (2023). Semi-mechanistic modeling of resistance development to β-lactam and β-lactamase-inhibitor combinations. Journal of pharmacokinetics and pharmacodynamics, 51, 199-211. https://doi.org/10.1007/s10928-023-09895-3
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Beckerson, W. C., Krider, C., Mohammad, U. A., & de Bekker, C. (2023). 28 minutes later: investigating the role of aflatrem-like compounds in Ophiocordyceps parasite manipulation of zombie ants. Animal Behaviour, 203, 225-240. https://doi.org/10.1016/j.anbehav.2023.06.011
Orban, A., Schwab, L. J., Lugones, L. G., Wösten, H. A. B., & Rühl, M. (2023). Effect of fruiting-related genes on the formation of volatile organic compounds in the mushroom Schizophyllum commune. Mycological Progress, 22(9), 1-16. Article 67. https://doi.org/10.1007/s11557-023-01914-4
Lyu, J., Torchia, C., Post, H., Moran Torres, J. P., Altelaar, A. F. M., de Cock, H., & Wösten, H. A. B. (2023). The α-(1,3)-glucan synthase gene agsE impacts the secretome of Aspergillus niger. Antonie van Leeuwenhoek, 116(9), 867-882. https://doi.org/10.1007/s10482-023-01853-w
Li, J., Wiebenga, A., Lipzen, A., Ng, V., Tejomurthula, S., Zhang, Y., Grigoriev, I. V., Peng, M., & de Vries, R. P. (2023). Comparative Genomics and Transcriptomics Analyses Reveal Divergent Plant Biomass-Degrading Strategies in Fungi. Journal of fungi (Basel, Switzerland), 9(8), 1-15. Article 860. https://doi.org/10.3390/jof9080860
Chen, X., Moran Torres, J. P., Li, Y., Lugones, L. G., & Wösten, H. A. B. (2023). Inheritable CRISPR based epigenetic modification in a fungus. Microbiological Research, 272, Article 127397. https://doi.org/10.1016/j.micres.2023.127397
Perez Ortega, J. (2023). Lipopolysaccharide bioengineering in Bordetella species: Lipopolysaccharide bioengineering in Bordetella species: Path to vaccines with reduced reactogenicity. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/1832
Hou, L. W., Giraldo, A., Groenewald, J. Z., Rämä, T., Summerbell, R. C., Huang, G. Z., Cai, L., & Crous, P. W. (2023). Redisposition of acremonium-like fungi in Hypocreales. Studies in Mycology, 105, 23-203. https://doi.org/10.3114/sim.2023.105.02
Pérez-Ortega, J., van Harten, R. M., Haagsman, H. P., & Tommassen, J. (2023). Physiological consequences of inactivation of lgmB and lpxL1, two genes involved in lipid A synthesis in Bordetella bronchiseptica. Research in Microbiology, 174(5), Article 104049. https://doi.org/10.1016/j.resmic.2023.104049
Zhao, L., Groenewald, J. Z., Hernández-Restrepo, M., Schroers, H. J., & Crous, P. W. (2023). Revising Clonostachys and allied genera in Bionectriaceae. Studies in Mycology, 105, 205-266. https://doi.org/10.3114/sim.2023.105.03
Lioe, T. S., Xie, Z., Wu, J., Li, W., Sun, L., Feng, Q., Sekar, R., Tefsen, B., & Ruiz-Carrillo, D. (2023). The Mycobacterium tuberculosis prolyl dipeptidyl peptidase cleaves the N-terminal peptide of the immunoprotein CXCL-10. Biological Chemistry, 404(6). https://doi.org/10.1515/hsz-2022-0265
Will, I., Linehan, S., Jenkins, D. G., & De bekker, C. (2023). Natural history and ecological effects on the establishment and fate of Florida carpenter ant cadavers infected by the parasitic manipulator Ophiocordyceps camponoti‐floridani. Functional Ecology, 37(4), 886-899. https://doi.org/10.1111/1365-2435.14224
Nagy, L. G., Vonk, P. J., Künzler, M., Földi, C., Virágh, M., Ohm, R. A., Hennicke, F., Bálint, B., Csernetics, Á., Hegedüs, B., Hou, Z., Liu, X. B., Nan, S., Pareek, M., Sahu, N., Szathmári, B., Varga, T., Wu, H., Yang, X., & Merényi, Z. (2023). Lessons on fruiting body morphogenesis from genomes and transcriptomes of Agaricomycetes. Studies in Mycology, 104(1), 1-85. Article 85. https://doi.org/10.3114/sim.2022.104.01
Zhang, X., Zhu, Y., Li, B., Tefsen, B., Wang, Z., & Wells, M. (2023). We need to plan streamlined environmental impact assessment for the future X-Press Pearl disasters. Marine Pollution Bulletin, 188, Article 114705. https://doi.org/10.1016/j.marpolbul.2023.114705
Lyu, J., Tegelaar, M., Post, H., Moran Torres, J., Torchia, C., Altelaar, A. F. M., Bleichrodt, R.-J., de Cock, H., Lugones, L. G., & Wösten, H. A. B. (2023). Heterogeneity in Spore Aggregation and Germination Results in Different Sized, Cooperative Microcolonies in an Aspergillus niger Culture. mBio, 14(1), 1-20. Article e0087022. https://doi.org/10.1128/mbio.00870-22
Zha, L., Zhang, X., Cheng, Y., Xu, Q., Liu, L., Chen, S., Lu, Z., Guo, J., & Tefsen, B. (2023). Intravenous Polymyxin B as Adjunctive Therapy to High-Dose Tigecycline for the Treatment of Nosocomial Pneumonia Due to Carbapenem-Resistant Acinetobacter baumannii and Klebsiella pneumoniae: A Propensity Score-Matched Cohort Study. Antibiotics, 12(2), Article 273. https://doi.org/10.3390/antibiotics12020273
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Safeer, A., Kleijburg, F., Bahri, S., Beriashvili, D., Veldhuizen, E., van Neer, J., Tegelaar, M., de Cock, H., Wösten, H., & Baldus, M. (2023). Probing Cell-Surface Interactions in Fungal Cell Walls by High-Resolution 1H-detected Solid-State NMR Spectroscopy. Chemistry-A European Journal, 29(1), Article e202202616. https://doi.org/10.1002/chem.202202616
Suiker, I. M., Kleijburg, F. E. L., & Wösten, H. A. B. (2023). Heat resistance acquirement of the spoilage yeast Saccharomyces diastaticus during heat exposure. Journal of Food Protection, 86(1), Article 100020. https://doi.org/10.1016/j.jfp.2022.100020

2022

Duca, M., Haksar, D., van Neer, J., Thies-Weesie, D. M. E., Martínez-Alarcón, D., de Cock, H., Varrot, A., & Pieters, R. J. (2022). Multivalent Fucosides Targeting β-Propeller Lectins from Lung Pathogens with Promising Anti-Adhesive Properties. ACS Chemical Biology, 17(12), 3515–3526. https://doi.org/10.1021/acschembio.2c00708
Craig, P., Ng, R., Tefsen, B., Linsen, S., Liu, Y., & Hendel, J. (2022). Information Visualisation for Antibiotic Detection Biochip Design and Testing. Processes, 10(12). https://doi.org/10.3390/pr10122680
Johns, L. E., Bebber, D. P., Gurr, S. J., & Brown, N. A. (2022). Emerging health threat and cost of Fusarium mycotoxins in European wheat. Nature Food, 3(12), 1014-1019. https://doi.org/10.1038/s43016-022-00655-z
van den Brandhof, J. G., & Wösten, H. A. B. (2022). Risk assessment of fungal materials. Fungal Biology and Biotechnology, 9(1), 1-20. Article 3. https://doi.org/10.1186/s40694-022-00134-x
Kilaru, S., Fantozzi, E., Cannon, S., Schuster, M., Chaloner, T. M., Guiu-Aragones, C., Gurr, S. J., & Steinberg, G. (2022). Zymoseptoria tritici white-collar complex integrates light, temperature and plant cues to initiate dimorphism and pathogenesis. Nature Communications, 13(1), Article 5625. https://doi.org/10.1038/s41467-022-33183-2
Uruén, C., García, C., Fraile, L., Tommassen, J., & Arenas, J. (2022). How Streptococcus suis escapes antibiotic treatments. Veterinary Research, 53(1), Article 91. https://doi.org/10.1186/s13567-022-01111-3
Zha, L., Li, X., Ren, Z., Zhang, D., Zou, Y., Pan, L., Li, S., Chen, S., & Tefsen, B. (2022). Pragmatic Comparison of Piperacillin/Tazobactam versus Carbapenems in Treating Patients with Nosocomial Pneumonia Caused by Extended-Spectrum β-Lactamase-Producing Klebsiella pneumoniae. Antibiotics, 11(10). https://doi.org/10.3390/antibiotics11101384
Cannon, S., Kay, W., Kilaru, S., Schuster, M., Gurr, S. J., Steinberg, G., & Thomma, B. (Ed.) (2022). Multi-site fungicides suppress banana Panama disease, caused by Fusarium oxysporum f. sp. cubense Tropical Race 4. PLoS Pathogens, 18(10), 1-37. Article e1010860. https://doi.org/10.1371/journal.ppat.1010860
Lyu, J. (2022). Functionality of heterogeneity in size of Aspergillus niger micro-colonies. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/1447
van den Brule, T. (2022). Heterogeneity in stress resistance of Paecilomyces variotii and related food spoilage fungi. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/1362
Livne, A., Wösten, H. A. B., Pearlmutter, D., & Gal, E. (2022). Fungal Mycelium Bio-Composite Acts as a CO2-Sink Building Material with Low Embodied Energy. ACS Sustainable Chemistry and Engineering, 10(37), 12099-12106. https://doi.org/10.1021/acssuschemeng.2c01314
Zhang, X., Barceló, D., Clougherty, R. J., Gao, B., Harms, H., Tefsen, B., Vithanage, M., Wang, H., Wang, Z., & Wells, M. (2022). “Potentially Toxic Element”─Something that Means Everything Means Nothing. Environmental Science & Technology, 56(17), 11922–11925. https://doi.org/10.1021/acs.est.2c03056
Herman, K. C., & Bleichrodt, R. (2022). Go with the flow: mechanisms driving water transport during vegetative growth and fruiting. Fungal Biology Reviews, 41, 10-23. https://doi.org/10.1016/j.fbr.2021.10.002
Ijadpanahsaravi, M., Teertstra, W. R., & Wösten, H. A. B. (2022). Inter- and intra-species heterogeneity in germination of Aspergillus conidia. Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology, 115(9), 1151-1164. https://doi.org/10.1007/s10482-022-01762-4
Hauptfeld, E., Pelkmans, J., Huisman, T. T., Anocic, A., Snoek, B. L., von Meijenfeldt, F. A. B., Gerritse, J., van Leeuwen, J., Leurink, G., van Lit, A., van Uffelen, R., Koster, M. C., & Dutilh, B. E. (2022). A metagenomic portrait of the microbial community responsible for two decades of bioremediation of poly-contaminated groundwater. Water Research, 221, 1-10. Article 118767. https://doi.org/10.1016/j.watres.2022.118767
Verburg, K., van Neer, J., Duca, M., & de Cock, H. (2022). Novel Treatment Approach for Aspergilloses by Targeting Germination. Journal of Fungi, 8(8), 1-30. Article 758. https://doi.org/10.3390/jof8080758
Pérez-Ortega, J., Van boxtel, R., De jonge, E. F., & Tommassen, J. (2022). Regulated Expression of lpxC Allows for Reduction of Endotoxicity in Bordetella pertussis. International Journal of Molecular Sciences, 23(14), 1-14. Article 8027. https://doi.org/10.3390/ijms23148027
Seekles, S. J., Punt, M., Savelkoel, N., Houbraken, J., Wösten, H. A. B., Ohm, R. A., & Ram, A. F. J. (2022). Genome sequences of 24 Aspergillus niger sensu stricto strains to study strain diversity, heterokaryon compatibility and sexual reproduction. G3: Genes, Genomes, Genetics, 12(7), 1-15. Article jkac124. https://doi.org/10.1093/g3journal/jkac124
De jonge, E. F., & Tommassen, J. (2022). Conditional growth defect of Bordetella pertussis and Bordetella bronchiseptica ferric uptake regulator (fur) mutants. FEMS Microbiology Letters, 369(1), 1-7. Article fnac047. https://doi.org/10.1093/femsle/fnac047
Bleichrodt, R.-J., & Wösten, H. A. B. (2022). Visualising long distance sugar transport in fungi using infrared fluorescence scanning imaging. Fungal Genetics and Biology, 161, 1-7. Article 103699. https://doi.org/10.1016/j.fgb.2022.103699
Wei, T. P., Zhang, H., Zeng, X. Y., Crous, P. W., & Jiang, Y. L. (2022). Re-evaluation of Sympoventuriaceae. Persoonia: Molecular Phylogeny and Evolution of Fungi, 48(1), 219-260. https://doi.org/10.3767/persoonia.2022.48.07
Punt, M., Seekles, S. J., van Dam, J. L., de Adelhart Toorop, C., Martina, R. R., Houbraken, J., Ram, A. F. J., Wösten, H. A. B., & Ohm, R. A. (2022). High sorbic acid resistance of Penicillium roqueforti is mediated by the SORBUS gene cluster. PLoS Genetics, 18(6), 1-25. Article e1010086. https://doi.org/10.1371/journal.pgen.1010086
de Jonge, E. F. (2022). Biogenesis of outer-membrane vesicles in Bordetella species. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/1214
van den Brule, T., Punt, M., Seekles, S. J., Segers, F. J. J., Houbraken, J., Hazeleger, W. C., Ram, A. F. J., Wösten, H. A. B., Zwietering, M. H., Dijksterhuis, J., & den Besten, H. M. W. (2022). Intraspecific variability in heat resistance of fungal conidia. Food Research International, 156, 1-9. Article 111302. https://doi.org/10.1016/j.foodres.2022.111302
Marian, I. M., Vonk, P. J., Valdes, I. D., Barry, K., Bostock, B., Carver, A., Daum, C., Lerner, H., Lipzen, A., Park, H., Schuller, M. B. P., Tegelaar, M., Tritt, A., Schmutz, J., Grimwood, J., Lugones, L. G., Choi, I.-G., Wösten, H. A. B., Grigoriev, I. V., & Ohm, R. A. (2022). The Transcription Factor Roc1 Is a Key Regulator of Cellulose Degradation in the Wood-Decaying Mushroom Schizophyllum commune. mBio, 13(3), 1-19. Article e0062822. https://doi.org/10.1128/mbio.00628-22
Vonk, P. J. (2022). Functional genomics in Schizophyllum commune. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/1035
Buijs, V. A., Groenewald, J. Z., Haridas, S., LaButti, K. M., Lipzen, A., Martin, F. M., Barry, K., Grigoriev, I. V., Crous, P. W., & Seidl, M. F. (2022). Enemy or ally: a genomic approach to elucidate the lifestyle of Phyllosticta citrichinaensis. G3: Genes, Genomes, Genetics, 12(5), 1-13. https://doi.org/10.1093/g3journal/jkac061
de Jonge, E. F., van Boxtel, R., Balhuizen, M. D., Haagsman, H. P., & Tommassen, J. (2022). Pal depletion results in hypervesiculation and affects cell morphology and outer-membrane lipid asymmetry in bordetellae. Research in Microbiology, 173(4-5), 1-13. Article 103937. https://doi.org/10.1016/j.resmic.2022.103937
Escobar, N., Keizer, E., Neer, J. V., Arentshorst, M., Strijp, J. V., Haas, P.-J., Ram, A., Punt, P., Wosten, H., & Cock, H. D. (2022). LaeA-dependent production of small molecules of Aspergillus niger that compete with specific antibodies that bind to human immune receptors. https://doi.org/10.1101/2022.04.26.489527
Suiker, I. M., & Wösten, H. A. B. (2022). Spoilage yeasts in beer and beer products. Current Opinion in Food Science, 44, 1-7. Article 100815. https://doi.org/10.1016/j.cofs.2022.100815
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Braat, N., Koster, M. C., & Wösten, H. A. B. (2022). Beneficial interactions between bacteria and edible mushrooms. Fungal Biology Reviews, 39, 60-72. https://doi.org/10.1016/j.fbr.2021.12.001
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Keizer, E. M., Valdes, I. D., McCann, B. L., Bignell, E. M., Wösten, H. A. B., & de Cock, H. (2022). The Protective Role of 1,8-Dihydroxynaphthalene-Melanin on Conidia of the Opportunistic Human Pathogen Aspergillus fumigatus Revisited: No Role in Protection against Hydrogen Peroxide and Superoxides. mSphere, 7(1), 1-11. Article e0087421. https://doi.org/10.1128/msphere.00874-21
Punt, M. (2022). Heterogeneity of food spoilage fungi. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/1010
Adamatzky, A., Ayres, P., Beasley, A. E., Chiolerio, A., Dehshibi, M. M., Gandia, A., Albergati, E., Mayne, R., Nikolaidou, A., Roberts, N., Tegelaar, M., Tsompanas, M.-A., Phillips, N., & Wösten, H. A. B. (2022). Fungal electronics. BioSystems, 212, 1-8. Article 104588. https://doi.org/10.1016/j.biosystems.2021.104588
Araújo, J. P. M., Lebert, B. M., Vermeulen, S., Brachmann, A., Ohm, R. A., Evans, H. C., & De bekker, C. (2022). Masters of the manipulator: two new hypocrealean genera, Niveomyces (Cordycipitaceae) and Torrubiellomyces (Ophiocordycipitaceae), parasitic on the zombie ant fungus Ophiocordyceps camponoti-floridani. Persoonia: Molecular Phylogeny and Evolution of Fungi, 171-194. https://doi.org/10.3767/persoonia.2022.49.05
Subroto, E., van Neer, J., Valdes, I., & de Cock, H. (2022). Growth of Aspergillus fumigatus in Biofilms in Comparison to Candida albicans. Journal of Fungi, 8(1), 1-23. Article 48. https://doi.org/10.3390/jof8010048
De jonge, E. F., Vogrinec, L., Van boxtel, R., & Tommassen, J. (2022). Inactivation of the Mla system and outer-membrane phospholipase A results in disrupted outer-membrane lipid asymmetry and hypervesiculation in Bordetella pertussis. Current Research in Microbial Sciences, 3, Article 100172. https://doi.org/10.1016/j.crmicr.2022.100172
Punt, M., Teertstra, W. R., & Wösten, H. A. B. (2022). Penicillium roqueforti conidia induced by L-amino acids can germinate without detectable swelling. Antonie van Leeuwenhoek, 115(1), 103-110. https://doi.org/10.1007/s10482-021-01686-5
Adamatzky, A., Ayres, P., Beasley, A. E., Roberts, N., & Wösten, H. A. B. (2022). Logics in Fungal Mycelium Networks. Logica Universalis, 16, 655–669 . https://doi.org/10.1007/s11787-022-00318-4

2021

Ivanova, E. P., Linklater, D. P., Aburto-Medina, A., Le, P., Baulin, V. A., Khuong Duy Nguyen, H., Curtain, R., Hanssen, E., Gervinskas, G., Hock Ng, S., Khanh Truong, V., Luque, P., Ramm, G., Wösten, H. A. B., Crawford, R. J., Juodkazis, S., & Maclaughlin, S. (2021). Antifungal versus antibacterial defence of insect wings. Journal of Colloid and Interface Science, 603, 886-897. https://doi.org/10.1016/j.jcis.2021.06.093
Gandia, A., van den Brandhof, J., Appels, F., & Jones, M. P. (2021). Flexible Fungal Materials: Shaping the Future. Trends in Biotechnology, 39(12), 1321-1331. https://doi.org/10.1016/j.tibtech.2021.03.002
Balhuizen, M. D., Versluis, C. M., Van Harten, R. M., De Jonge, E. F., Brouwers, J. F., Van De Lest, C. H. A., Veldhuizen, E. J. A., Tommassen, J., & Haagsman, H. P. (2021). PMAP-36 reduces the innate immune response induced by Bordetella bronchiseptica-derived outer membrane vesicles. Current Research in Microbial Sciences, 2, Article 100010. https://doi.org/10.1016/j.crmicr.2020.100010
Peng, M., Khosravi, C., Lubbers, R. J. M., Kun, R. S., Aguilar Pontes, M. V., Battaglia, E., Chen, C., Dalhuijsen, S., Daly, P., Lipzen, A., Ng, V., Yan, J., Wang, M., Visser, J., Grigoriev, I. V., Mäkelä, M. R., & de Vries, R. P. (2021). CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner. The Cell Surface, 7, 1-11. Article 100050. https://doi.org/10.1016/j.tcsw.2021.100050
Vonk, P. J., & Ohm, R. A. (2021). H3K4me2 ChIP-Seq reveals the epigenetic landscape during mushroom formation and novel developmental regulators of Schizophyllum commune. Scientific Reports, 11(1), 1-15. Article 8178. https://doi.org/10.1038/s41598-021-87635-8
De Jonge, E. F., Balhuizen, M. D., Van Boxtel, R., Wu, J., Haagsman, H. P., & Tommassen, J. (2021). Heat shock enhances outer-membrane vesicle release in Bordetella spp. Current Research in Microbial Sciences, 2, 1-11. Article 100009. https://doi.org/10.1016/j.crmicr.2020.100009
Seekles, S. J., Teunisse, P. P. P., Punt, M., van den Brule, T., Dijksterhuis, J., Houbraken, J., Wösten, H. A. B., & Ram, A. F. J. (2021). Preservation stress resistance of melanin deficient conidia from Paecilomyces variotii and Penicillium roqueforti mutants generated via CRISPR/Cas9 genome editing. Fungal Biology and Biotechnology, 8(1), 1-13. Article 4. https://doi.org/10.1186/s40694-021-00111-w
Hu, Z., Borsje, B. W., van Belzen, J., Willemsen, P. W. J. M., Wang, H., Peng, Y., Yuan, L., De Dominicis, M., Wolf, J., Temmerman, S., & Bouma, T. J. (2021). Mechanistic Modeling of Marsh Seedling Establishment Provides a Positive Outlook for Coastal Wetland Restoration Under Global Climate Change. Geophysical Research Letters, 48(22), 1-12. Article e2021GL095596. https://doi.org/10.1029/2021GL095596
Cozzoli, F., Shokri, M., Gomes da Conceição, T., Herman, P. M. J., Hu, Z., Soissons, L. M., Van Dalen, J., Ysebaert, T., & Bouma, T. J. (2021). Modelling spatial and temporal patterns in bioturbator effects on sediment resuspension: A biophysical metabolic approach. Science of the Total Environment, 792, 1-10. Article 148215. https://doi.org/10.1016/j.scitotenv.2021.148215
Buijs, V. A., Zuijdgeest, X. C. L., Groenewald, J. Z., Crous, P. W., & De Vries, R. P. (2021). Carbon utilization and growth-inhibition of citrus-colonizing Phyllosticta species. Fungal Biology, 125(10), 815-825. https://doi.org/10.1016/j.funbio.2021.05.003
van Brenk, B., & Wösten, H. A. B. (2021). A screening method for decoloration of xenobiotic dyes by fungi. Journal of Microbiological Methods, 188, 1-4. Article 106301. https://doi.org/10.1016/j.mimet.2021.106301
Keizer, E. M., Valdes, I. D., Forn-Cuni, G., Klijn, E., Meijer, A. H., Hillmann, F., Wösten, H. A. B., & de Cock, H. (2021). Correction: Variation of virulence of five Aspergillus fumigatus isolates in four different infection models. PLoS One, 16(9), Article e0258072. https://doi.org/10.1371/journal.pone.0258072
De Geyter, D., Vanstokstraeten, R., Crombé, F., Tommassen, J., Wybo, I., & Piérard, D. (2021). Sink drains as reservoirs of VIM-2 metallo-β-lactamase-producing Pseudomonas aeruginosa in a Belgian intensive care unit: relation to patients investigated by whole-genome sequencing. Journal of Hospital Infection, 115, 75-82. https://doi.org/10.1016/j.jhin.2021.05.010
Chaloner, T. M., Gurr, S. J., & Bebber, D. P. (2021). Plant pathogen infection risk tracks global crop yields under climate change. Nature Climate Change, 11(8), 710-715. https://doi.org/10.1038/s41558-021-01104-8
Blunden, J., Boyer, T., Dunn, R. J. H., Allen, J., Andersen, A., Hammer, G., Love-Brotak, S. E., Misch, D. J., Riddle, D. B., Veasey, S. W., Ades, M., Adler, R., Aldred, F., Allan, R. P., Allan, R., Anderson, J., Argüez, A., Arosio, C., Augustine, J. A., ... Zhu, Z. (2021). State of the climate in 2020. Bulletin of the American Meteorological Society, 102(8), 1-481. https://doi.org/10.1175/2021BAMSStateoftheClimate.1
Wang, H., Peng, Y., Wang, C., Wen, Q., Xu, J., Hu, Z., Jia, X., Zhao, X., Lian, W., Temmerman, S., Wolf, J., & Bouma, T. (2021). Mangrove Loss and Gain in a Densely Populated Urban Estuary: Lessons From the Guangdong-Hong Kong-Macao Greater Bay Area. Frontiers in marine science, 8, 1-14. Article 693450. https://doi.org/10.3389/fmars.2021.693450
Chong, P., Essoh, J. N., Arango Isaza, R. E., Keizer, P., Stergiopoulos, I., Seidl, M. F., Guzman, M., Sandoval, J., Verweij, P. E., Scalliet, G., Sierotzski, H., de Lapeyre de Bellaire, L., Crous, P. W., Carlier, J., Cros, S., Meijer, H. J. G., Peralta, E. L., & Kema, G. H. J. (2021). A world-wide analysis of reduced sensitivity to DMI fungicides in the banana pathogen Pseudocercospora fijiensis. Pest Management Science, 77(7), 3273-3288. https://doi.org/10.1002/ps.6372
Keizer, E. M., Valdes, I. D., Forn-Cuni, G., Klijn, E., Meijer, A. H., Hillman, F., Wösten, H. A. B., & de Cock, H. (2021). Variation of virulence of five Aspergillus fumigatus isolates in four different infection models. PLoS One, 16(7), Article e0252948. https://doi.org/10.1371/journal.pone.0252948
Suiker, I. M., Arkesteijn, G. J. A., Zeegers, P. J., & Wösten, H. A. B. (2021). Presence of Saccharomyces cerevisiae subsp. diastaticus in industry and nature and spoilage capacity of its vegetative cells and ascospores. International Journal of Food Microbiology, 347, 1-9. Article 109173. https://doi.org/10.1016/j.ijfoodmicro.2021.109173
Mantilla, M. J., Cabrera Díaz, C. E., Ariza-Aranguren, G., de Cock, H., Helms, J. B., Restrepo, S., Jiménez, E., & Celis Ramírez, A. M. (2021). Back to the Basics: Two Approaches for the Identification and Extraction of Lipid Droplets from Malassezia pachydermatis CBS1879 and Malassezia globosa CBS7966. Current Protocols, 1(5), 1-16. Article e122. https://doi.org/10.1002/cpz1.122
Howell, G., & Bleichrodt, R.-J. (2021). Single Cell Analysis and Sorting of Aspergillus fumigatus by Flow Cytometry. Bio-protocol, 11(8), 1-11. Article e3993. https://doi.org/10.21769/BioProtoc.3993
Keizer, E. M. (2021). Interaction between the opportunistic pathogen Aspergillus fumigatus and its host. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/632
Suiker e/v Kool, I. M. (2021). Heterogeneity between and within strains of the beer spoilage yeast Saccharomyces cerevisiae subspecies diastaticus. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/571
Ijadpanahsaravi, M., Punt, M., Wösten, H. A. B., & Teertstra, W. R. (2021). Minimal nutrient requirements for induction of germination of Aspergillus niger conidia. Fungal Biology, 125(3), 231-238. https://doi.org/10.1016/j.funbio.2020.11.004
Crous, P. W., Lombard, L., Sandoval-Denis, M., Seifert, K. A., Schroers, H. J., Chaverri, P., Gené, J., Guarro, J., Hirooka, Y., Bensch, K., Kema, G. H. J., Lamprecht, S. C., Cai, L., Rossman, A. Y., Stadler, M., Summerbell, R. C., Taylor, J. W., Ploch, S., Visagie, C. M., ... Thines, M. (2021). Fusarium: more than a node or a foot-shaped basal cell. Studies in Mycology, 98, 1-184. Article 100116. https://doi.org/10.1016/j.simyco.2021.100116
Dell'Olmo, E., Gaglione, R., Cesaro, A., Cafaro, V., Teertstra, W. R., de Cock, H., Notomista, E., Haagsman, H. P., Veldhuizen, E. J. A., & Arciello, A. (2021). Host defence peptides identified in human apolipoprotein B as promising antifungal agents. Applied Microbiology and Biotechnology, 105(5), 1953-1964. https://doi.org/10.1007/s00253-021-11114-3
Uruén, C., Chopo-Escuin, G., Tommassen, J., Mainar-Jaime, R. C., & Arenas, J. (2021). Biofilms as promoters of bacterial antibiotic resistance and tolerance. Antibiotics, 10(1), 1-36. Article 3. https://doi.org/10.3390/antibiotics10010003
Appels, F. V. W., & Wösten, H. A. B. (2021). Mycelium Materials. In Encyclopedia of Mycology (Vol. 2, pp. 710-718). Elsevier. https://doi.org/10.1016/B978-0-12-809633-8.21131-X
Vos, A. M., Bleichrodt, R.-J., Herman, K. C., Ohm, R. A., Scholtmeijer, K., Schmitt, H., Lugones, L. G., & Wösten, H. A. B. (2021). Cycling in degradation of organic polymers and uptake of nutrients by a litter-degrading fungus. Environmental Microbiology, 23(1), 224-238. https://doi.org/10.1111/1462-2920.15297
Dalonso, N., Petkowicz, C. L. O., Lugones, L. G., Silveira, M. L. L., & Gern, R. M. M. (2021). Comparison of cell wall polysaccharides in schizophyllum commune after changing phenotype by mutation. Anais da Academia Brasileira de Ciencias, 93, 1-17. Article e20210047. https://doi.org/10.1590/0001-3765202120210047
Pérez-Ortega, J., Van Harten, R. M., Van Boxtel, R., Plisnier, M., Louckx, M., Ingels, D., Haagsman, H. P., & Tommassen, J. (2021). Reduction of endotoxicity in Bordetella bronchiseptica by lipid A engineering: Characterization of lpxL1 and pagP mutants. Virulence, 12(1), 1452-1468. https://doi.org/10.1080/21505594.2021.1929037
Arenas, J., Szabo, Z., van der Wal, J., Maas, C., Riaz, T., Tønjum, T., & Tommassen, J. (2021). Serum proteases prevent bacterial biofilm formation: role of kallikrein and plasmin. Virulence, 12(1), 2902-2917. https://doi.org/10.1080/21505594.2021.2003115

2020

Arenas, J., Catón, L., Van Den Hoeven, T., De Maat, V., Cruz Herrero, J., & Tommassen, J. (2020). The outer-membrane protein MafA of Neisseria meningitidis constitutes a novel protein secretion pathway specific for the fratricide protein MafB. Virulence, 11(1), 1701-1715. https://doi.org/10.1080/21505594.2020.1851940
Ehren, H. L., Appels, F. V. W., Houben, K., Renault, M. A. M., Wösten, H. A. B., & Baldus, M. (2020). Characterization of the cell wall of a mushroom forming fungus at atomic resolution using solid-state NMR spectroscopy. Cell Surface, 6, 1-10. Article 100046. https://doi.org/10.1016/j.tcsw.2020.100046
Arenas, J., Pupo, E., Phielix, C., David, D., Zariri, A., Zamyatina, A., Tommassen, J., & Van Der Ley, P. (2020). Shortening the Lipid A Acyl Chains of Bordetella pertussis Enables Depletion of Lipopolysaccharide Endotoxic Activity. Vaccines, 8(4), Article 594. https://doi.org/10.3390/vaccines8040594
Valdes, I. D., Hart de Ruijter, A. B. P., Torres, C. J., Breuker, J. C. A., Wösten, H. A. B., & de Cock, H. (2020). The sino-nasal warzone: transcriptomic and genomic studies on sino-nasal aspergillosis in dogs. npj Biofilms and Microbiomes, 6(1), 1-12. Article 51. https://doi.org/10.1038/s41522-020-00163-7
van den Brule, T., Lee, C. L. S., Houbraken, J., Haas, P. J., Wösten, H., & Dijksterhuis, J. (2020). Conidial heat resistance of various strains of the food spoilage fungus Paecilomyces variotii correlates with mean spore size, spore shape and size distribution. Food Research International, 137, 1-9. Article 109514. https://doi.org/10.1016/j.foodres.2020.109514
van Eijk, M., Boerefijn, S., Rosa, M., Morren, M. J. H., van der Ent, C. K., Kraak, B., Dijksterhuis, J., Valdes Barrera, I. D., Haagsman, H. P., & de Cock, H. (2020). Cathelicidin-inspired antimicrobial peptides as novel antifungal compounds. Medical Mycology, 58(8), 1073–1084. https://doi.org/10.1093/mmy/myaa014
Steinberg, G., & Gurr, S. J. (2020). Fungi, fungicide discovery and global food security. Fungal Genetics and Biology, 144, Article 103476. https://doi.org/10.1016/j.fgb.2020.103476
Ohm, R. A. (2020). Fungal Genomics. In J. P. Benz, & K. Schipper (Eds.), Genetics and Biotechnology (3 ed., pp. 207-224). (The Mycota; Vol. 2). Springer. https://doi.org/10.1007/978-3-030-49924-2_9
Miyauchi, S., Kiss, E., Kuo, A., Drula, E., Kohler, A., Sánchez-García, M., Morin, E., Andreopoulos, B., Barry, K. W., Bonito, G., Buée, M., Carver, A., Chen, C., Cichocki, N., Clum, A., Culley, D., Crous, P. W., Fauchery, L., Girlanda, M., ... Martin, F. M. (2020). Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits. Nature Communications, 11(1), Article 5125. https://doi.org/10.1038/s41467-020-18795-w
Keizer, E. M., Wösten, H. A. B., & de Cock, H. (2020). EphA2-Dependent Internalization of A. fumigatus Conidia in A549 Lung Cells Is Modulated by DHN-Melanin. Frontiers in Microbiology, 11, 1-12. Article 534118. https://doi.org/10.3389/fmicb.2020.534118
Punt, M., van den Brule, T., Teertstra, W. R., Dijksterhuis, J., den Besten, H. M. W., Ohm, R. A., & Wösten, H. A. B. (2020). Impact of maturation and growth temperature on cell-size distribution, heat-resistance, compatible solute composition and transcription profiles of Penicillium roqueforti conidia. Food Research International, 136, 1-12. Article 109287. https://doi.org/10.1016/j.foodres.2020.109287
Herman, K. C., Wösten, H. A. B., Fricker, M. D., & Bleichrodt, R. J. (2020). Growth induced translocation effectively directs an amino acid analogue to developing zones in Agaricus bisporus. Fungal Biology, 124(12), 1013-1023. https://doi.org/10.1016/j.funbio.2020.09.002
Sonnenberg, A. S. M., Sedaghat-Telgerd, N., Lavrijssen, B., Ohm, R. A., Hendrickx, P. M., Scholtmeijer, K., Baars, J. J. P., & van Peer, A. (2020). Telomere-to-telomere assembled and centromere annotated genomes of the two main subspecies of the button mushroom Agaricus bisporus reveal especially polymorphic chromosome ends. Scientific Reports, 10(1), Article 14653. https://doi.org/10.1038/s41598-020-71043-5
Torres, M., de Cock, H., & Celis Ramírez, A. M. (2020). In Vitro or In Vivo Models, the Next Frontier for Unraveling Interactions between Malassezia spp. and Hosts. How Much Do We Know? Journal of fungi (Basel, Switzerland), 6(3), Article 155. https://doi.org/10.3390/jof6030155
Goles, E., Tsompanas, M. A., Adamatzky, A., Tegelaar, M., Wosten, H. A. B., & Martínez, G. J. (2020). Computational universality of fungal sandpile automata. Physics Letters, Section A: General, Atomic and Solid State Physics, 384(22), 1-8. Article 126541. https://doi.org/10.1016/j.physleta.2020.126541