Publications

2024

van Brenk, B., Kleijburg, F. E. L., Kemperman, A. J. B., van der Meer, W. G. J., & Wösten, H. A. B. (2024). Enzymatic and non-enzymatic removal of organic micropollutants with spent mushroom substrate of Agaricus bisporus. Applied Microbiology and Biotechnology, 108(1), 301. https://doi.org/10.1007/s00253-024-13132-3
Herman, K. C. (2024). Translocation of water and nutrients during growth and fructification of Agaricus bisporus. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/2231
Collaboration, KAGRA Collaboration, Fermi Gamma-Ray Burst Monitor Team, & LIGO Scientific Collaboration (2024). A Joint Fermi-GBM and Swift-BAT Analysis of Gravitational-wave Candidates from the Third Gravitational-wave Observing Run. Astrophysical Journal, 964(2), Article 149. https://doi.org/10.3847/1538-4357/ad1eed
Canoy, T. S., Wiedenbein, E. S., Bredie, W. L. P., Meyer, A. S., Wösten, H. A. B., & Nielsen, D. S. (2024). Solid-State Fermented Plant Foods as New Protein Sources. Annual review of food science and technology, 15. https://doi.org/10.1146/annurev-food-060721-013526
Livne, A., Pearlmutter, D., Gal, E., & Wösten, H. A. B. (2024). Increased CO2 fixation and reduced embodied energy of mycelium bio-composite materials grown on a mixed substrate over diurnal temperature cycles. Construction and Building Materials, 421, Article 135566. https://doi.org/10.1016/j.conbuildmat.2024.135566
Chen, X., Moran Torres, J. P., & Wösten, H. A. B. (2024). The role of the Flb protein family in the life cycle of Aspergillus niger. Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology, 117(1), Article 58. https://doi.org/10.1007/s10482-024-01957-x
Beijen, EPW., & Ohm, RA. (2024). Genome annotations for the ascomycete fungi Trichoderma harzianum, Trichoderma aggressivum, and Purpureocillium lilacinum. Microbiology Resource Announcements, 13(3). https://doi.org/10.1128/mra.01153-23
Hegde, S., Khanipov, K., Hornett, E. A., Nilyanimit, P., Pimenova, M., Saldaña, M. A., de Bekker, C., Golovko, G., & Hughes, G. L. (2024). Interkingdom interactions shape the fungal microbiome of mosquitoes. Animal microbiome, 6(1), Article 11. https://doi.org/10.1186/s42523-024-00298-4
Rensink, S., van Nieuwenhuijzen, E. J., Sailer, M. F., Struck, C., & Wösten, H. A. B. (2024). Use of Aureobasidium in a sustainable economy. Applied Microbiology and Biotechnology, 108(1), Article 202. https://doi.org/10.1007/s00253-024-13025-5
Egas, RA., Sahonero-Canavesi, DX., Bale, NJ., Koenen, M., Yildiz, C., Villanueva, L., Sousa, DZ., & Sánchez-Andrea, I. (2024). Acetic acid stress response of the acidophilic sulfate reducer Acididesulfobacillus acetoxydans. Environmental Microbiology, 26(2), Article e16565. https://doi.org/10.1111/1462-2920.16565
Ijadpanahsaravi, M., Snoek, L. B., Teertstra, W. R., & Wösten, H. A. B. (2024). The impact of inter- and intra-species spore density on germination of the food spoilage fungus Aspergillus niger. International Journal of Food Microbiology, 410, 1-10. Article 110495. https://doi.org/10.1016/j.ijfoodmicro.2023.110495
van Brenk, B. (2024). Waste treating waste: Organic micropollutant removal from water by Agaricus bisporus spent mushroom substrate. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/2096
Perez, C. S., Jongh, R. D., Jonkergouw, R., Pelayo, P., Balskus, E. P., Zomer, A., & Strijbis, K. (2024). Prevotella timonensis degrades the vaginal epithelial glycocalyx through high fucosidase and sialidase activities. (pp. 1-26). bioRxiv. https://doi.org/10.1101/2024.01.09.574844

2023

Kleijburg, F. E. L., Safeer, A. A., Baldus, M., & Wösten, H. A. B. (2023). Binding of micro-nutrients to the cell wall of the fungus Schizophyllum commune. The Cell Surface, 10, Article 100108. https://doi.org/10.1016/j.tcsw.2023.100108
Pérez-Ortega, J., Van boxtel, R., Plisnier, M., Ingels, D., Devos, N., Sijmons, S., & Tommassen, J. (2023). Biosynthesis of the Inner Core of Bordetella pertussis Lipopolysaccharides: Effect of Mutations on LPS Structure, Cell Division, and Toll-like Receptor 4 Activation. International Journal of Molecular Sciences, 24(24), 1-23. Article 17313. https://doi.org/10.3390/ijms242417313
Will, I., Attardo, G. M., & de Bekker, C. (2023). Multiomic interpretation of fungus-infected ant metabolomes during manipulated summit disease. Scientific Reports, 13(1), 1-19. Article 14363. https://doi.org/10.1038/s41598-023-40065-0
Adamatzky, A., Schunselaar, E., Wösten, H. A. B., & Ayres, P. (2023). Multiscalar electrical spiking in Schizophyllum commune. Scientific Reports, 13(1), Article 12808. https://doi.org/10.1038/s41598-023-40163-z
Will, I., Beckerson, W. C., & de Bekker, C. (2023). Using machine learning to predict protein-protein interactions between a zombie ant fungus and its carpenter ant host. Scientific Reports, 13(1), 1-16. Article 13821. https://doi.org/10.1038/s41598-023-40764-8
Tandar, S. T., Aulin, L. B. S., Leemkuil, E. M. J., Liakopoulos, A., & van Hasselt, J. G. C. (2023). Semi-mechanistic modeling of resistance development to β-lactam and β-lactamase-inhibitor combinations. Journal of pharmacokinetics and pharmacodynamics. Advance online publication. https://doi.org/10.1007/s10928-023-09895-3
Seekles, S. J., van den Brule, T., Punt, M., Dijksterhuis, J., Arentshorst, M., Ijadpanahsaravi, M., Roseboom, W., Meuken, G., Ongenae, V., Zwerus, J., Ohm, R. A., Kramer, G., Wösten, H. A. B., de Winde, J. H., & Ram, A. F. J. (2023). Compatible solutes determine the heat resistance of conidia. Fungal Biology and Biotechnology, 10(1), Article 21. https://doi.org/10.1186/s40694-023-00168-9
Etalo, D. W., Rybka, D., Lombard, L., Leite, M. F. A., Ossowicki, A., Dini-Andreote, F., Arias-Giraldo, L., Kuramae, E. E., Crous, P. W., Tessema, T., & Raaijmakers, J. M. (2023). Reciprocal interactions between the sorghum root microbiome and the parasitic weed Striga hermonthica. (pp. 1-31). bioRxiv. https://doi.org/10.1101/2023.10.01.560362
Li, B., Zhang, X., Wu, G., Qin, B., Tefsen, B., & Wells, M. (2023). Toxins from harmful algal blooms: How copper and iron render chalkophore a predictor of microcystin production. Water Research, 244, Article 120490. https://doi.org/10.1016/j.watres.2023.120490
Beckerson, W. C., Krider, C., Mohammad, U. A., & de Bekker, C. (2023). 28 minutes later: investigating the role of aflatrem-like compounds in Ophiocordyceps parasite manipulation of zombie ants. Animal Behaviour, 203, 225-240. https://doi.org/10.1016/j.anbehav.2023.06.011
Orban, A., Schwab, L. J., Lugones, L. G., Wösten, H. A. B., & Rühl, M. (2023). Effect of fruiting-related genes on the formation of volatile organic compounds in the mushroom Schizophyllum commune. Mycological Progress, 22(9), 1-16. Article 67. https://doi.org/10.1007/s11557-023-01914-4
Lyu, J., Torchia, C., Post, H., Moran Torres, J. P., Altelaar, A. F. M., de Cock, H., & Wösten, H. A. B. (2023). The α-(1,3)-glucan synthase gene agsE impacts the secretome of Aspergillus niger. Antonie van Leeuwenhoek, 116(9), 867-882. https://doi.org/10.1007/s10482-023-01853-w
Li, J., Wiebenga, A., Lipzen, A., Ng, V., Tejomurthula, S., Zhang, Y., Grigoriev, I. V., Peng, M., & de Vries, R. P. (2023). Comparative Genomics and Transcriptomics Analyses Reveal Divergent Plant Biomass-Degrading Strategies in Fungi. Journal of fungi (Basel, Switzerland), 9(8), 1-15. Article 860. https://doi.org/10.3390/jof9080860
Chen, X., Moran Torres, J. P., Li, Y., Lugones, L. G., & Wösten, H. A. B. (2023). Inheritable CRISPR based epigenetic modification in a fungus. Microbiological Research, 272, Article 127397. https://doi.org/10.1016/j.micres.2023.127397
Perez Ortega, J. (2023). Lipopolysaccharide bioengineering in Bordetella species: Lipopolysaccharide bioengineering in Bordetella species: Path to vaccines with reduced reactogenicity. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/1832
Hou, L. W., Giraldo, A., Groenewald, J. Z., Rämä, T., Summerbell, R. C., Huang, G. Z., Cai, L., & Crous, P. W. (2023). Redisposition of acremonium-like fungi in Hypocreales. Studies in Mycology, 105, 23-203. https://doi.org/10.3114/sim.2023.105.02
Pérez-Ortega, J., van Harten, R. M., Haagsman, H. P., & Tommassen, J. (2023). Physiological consequences of inactivation of lgmB and lpxL1, two genes involved in lipid A synthesis in Bordetella bronchiseptica. Research in Microbiology, 174(5), Article 104049. https://doi.org/10.1016/j.resmic.2023.104049
Zhao, L., Groenewald, J. Z., Hernández-Restrepo, M., Schroers, H. J., & Crous, P. W. (2023). Revising Clonostachys and allied genera in Bionectriaceae. Studies in Mycology, 105, 205-266. https://doi.org/10.3114/sim.2023.105.03
Lioe, T. S., Xie, Z., Wu, J., Li, W., Sun, L., Feng, Q., Sekar, R., Tefsen, B., & Ruiz-Carrillo, D. (2023). The Mycobacterium tuberculosis prolyl dipeptidyl peptidase cleaves the N-terminal peptide of the immunoprotein CXCL-10. Biological Chemistry, 404(6). https://doi.org/10.1515/hsz-2022-0265
Will, I., Linehan, S., Jenkins, D. G., & De bekker, C. (2023). Natural history and ecological effects on the establishment and fate of Florida carpenter ant cadavers infected by the parasitic manipulator Ophiocordyceps camponoti‐floridani. Functional Ecology, 37(4), 886-899. https://doi.org/10.1111/1365-2435.14224
Nagy, L. G., Vonk, P. J., Künzler, M., Földi, C., Virágh, M., Ohm, R. A., Hennicke, F., Bálint, B., Csernetics, Á., Hegedüs, B., Hou, Z., Liu, X. B., Nan, S., Pareek, M., Sahu, N., Szathmári, B., Varga, T., Wu, H., Yang, X., & Merényi, Z. (2023). Lessons on fruiting body morphogenesis from genomes and transcriptomes of Agaricomycetes. Studies in Mycology, 104(1), 1-85. Article 85. https://doi.org/10.3114/sim.2022.104.01
Zhang, X., Zhu, Y., Li, B., Tefsen, B., Wang, Z., & Wells, M. (2023). We need to plan streamlined environmental impact assessment for the future X-Press Pearl disasters. Marine Pollution Bulletin, 188, Article 114705. https://doi.org/10.1016/j.marpolbul.2023.114705
Lyu, J., Tegelaar, M., Post, H., Moran Torres, J., Torchia, C., Altelaar, A. F. M., Bleichrodt, R.-J., de Cock, H., Lugones, L. G., & Wösten, H. A. B. (2023). Heterogeneity in Spore Aggregation and Germination Results in Different Sized, Cooperative Microcolonies in an Aspergillus niger Culture. mBio, 14(1), 1-20. Article e0087022. https://doi.org/10.1128/mbio.00870-22
Zha, L., Zhang, X., Cheng, Y., Xu, Q., Liu, L., Chen, S., Lu, Z., Guo, J., & Tefsen, B. (2023). Intravenous Polymyxin B as Adjunctive Therapy to High-Dose Tigecycline for the Treatment of Nosocomial Pneumonia Due to Carbapenem-Resistant Acinetobacter baumannii and Klebsiella pneumoniae: A Propensity Score-Matched Cohort Study. Antibiotics, 12(2), Article 273. https://doi.org/10.3390/antibiotics12020273
Craig, P., Ng, R., Liu, Y., Tefsen, B., & Linsen, S. (2023). BioChipVis: An information visualization interface for explainable biochip data classification. Electronic Imaging, 35, 1-7. Article 404. https://doi.org/10.2352/ei.2023.35.1.vda-404
Safeer, A., Kleijburg, F., Bahri, S., Beriashvili, D., Veldhuizen, E., van Neer, J., Tegelaar, M., de Cock, H., Wösten, H., & Baldus, M. (2023). Probing Cell-Surface Interactions in Fungal Cell Walls by High-Resolution 1H-detected Solid-State NMR Spectroscopy. Chemistry-A European Journal, 29(1), Article e202202616. https://doi.org/10.1002/chem.202202616
Suiker, I. M., Kleijburg, F. E. L., & Wösten, H. A. B. (2023). Heat resistance acquirement of the spoilage yeast Saccharomyces diastaticus during heat exposure. Journal of Food Protection, 86(1), Article 100020. https://doi.org/10.1016/j.jfp.2022.100020

2022

Duca, M., Haksar, D., van Neer, J., Thies-Weesie, D. M. E., Martínez-Alarcón, D., de Cock, H., Varrot, A., & Pieters, R. J. (2022). Multivalent Fucosides Targeting β-Propeller Lectins from Lung Pathogens with Promising Anti-Adhesive Properties. ACS Chemical Biology, 17(12), 3515–3526. https://doi.org/10.1021/acschembio.2c00708
Craig, P., Ng, R., Tefsen, B., Linsen, S., Liu, Y., & Hendel, J. (2022). Information Visualisation for Antibiotic Detection Biochip Design and Testing. Processes, 10(12). https://doi.org/10.3390/pr10122680
Johns, L. E., Bebber, D. P., Gurr, S. J., & Brown, N. A. (2022). Emerging health threat and cost of Fusarium mycotoxins in European wheat. Nature Food, 3(12), 1014-1019. https://doi.org/10.1038/s43016-022-00655-z
van den Brandhof, J. G., & Wösten, H. A. B. (2022). Risk assessment of fungal materials. Fungal Biology and Biotechnology, 9(1), 1-20. Article 3. https://doi.org/10.1186/s40694-022-00134-x
Kilaru, S., Fantozzi, E., Cannon, S., Schuster, M., Chaloner, T. M., Guiu-Aragones, C., Gurr, S. J., & Steinberg, G. (2022). Zymoseptoria tritici white-collar complex integrates light, temperature and plant cues to initiate dimorphism and pathogenesis. Nature Communications, 13(1), Article 5625. https://doi.org/10.1038/s41467-022-33183-2
Uruén, C., García, C., Fraile, L., Tommassen, J., & Arenas, J. (2022). How Streptococcus suis escapes antibiotic treatments. Veterinary Research, 53(1), Article 91. https://doi.org/10.1186/s13567-022-01111-3
Zha, L., Li, X., Ren, Z., Zhang, D., Zou, Y., Pan, L., Li, S., Chen, S., & Tefsen, B. (2022). Pragmatic Comparison of Piperacillin/Tazobactam versus Carbapenems in Treating Patients with Nosocomial Pneumonia Caused by Extended-Spectrum β-Lactamase-Producing Klebsiella pneumoniae. Antibiotics, 11(10). https://doi.org/10.3390/antibiotics11101384
Cannon, S., Kay, W., Kilaru, S., Schuster, M., Gurr, S. J., Steinberg, G., & Thomma, B. (Ed.) (2022). Multi-site fungicides suppress banana Panama disease, caused by Fusarium oxysporum f. sp. cubense Tropical Race 4. PLoS Pathogens, 18(10), 1-37. Article e1010860. https://doi.org/10.1371/journal.ppat.1010860
Lyu, J. (2022). Functionality of heterogeneity in size of Aspergillus niger micro-colonies. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/1447
van den Brule, T. (2022). Heterogeneity in stress resistance of Paecilomyces variotii and related food spoilage fungi. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/1362
Livne, A., Wösten, H. A. B., Pearlmutter, D., & Gal, E. (2022). Fungal Mycelium Bio-Composite Acts as a CO2-Sink Building Material with Low Embodied Energy. ACS Sustainable Chemistry and Engineering, 10(37), 12099-12106. https://doi.org/10.1021/acssuschemeng.2c01314
Zhang, X., Barceló, D., Clougherty, R. J., Gao, B., Harms, H., Tefsen, B., Vithanage, M., Wang, H., Wang, Z., & Wells, M. (2022). “Potentially Toxic Element”─Something that Means Everything Means Nothing. Environmental Science & Technology, 56(17), 11922–11925. https://doi.org/10.1021/acs.est.2c03056
Herman, K. C., & Bleichrodt, R. (2022). Go with the flow: mechanisms driving water transport during vegetative growth and fruiting. Fungal Biology Reviews, 41, 10-23. https://doi.org/10.1016/j.fbr.2021.10.002
Ijadpanahsaravi, M., Teertstra, W. R., & Wösten, H. A. B. (2022). Inter- and intra-species heterogeneity in germination of Aspergillus conidia. Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology, 115(9), 1151-1164. https://doi.org/10.1007/s10482-022-01762-4
Hauptfeld, E., Pelkmans, J., Huisman, T. T., Anocic, A., Snoek, B. L., von Meijenfeldt, F. A. B., Gerritse, J., van Leeuwen, J., Leurink, G., van Lit, A., van Uffelen, R., Koster, M. C., & Dutilh, B. E. (2022). A metagenomic portrait of the microbial community responsible for two decades of bioremediation of poly-contaminated groundwater. Water Research, 221, 1-10. Article 118767. https://doi.org/10.1016/j.watres.2022.118767
Verburg, K., van Neer, J., Duca, M., & de Cock, H. (2022). Novel Treatment Approach for Aspergilloses by Targeting Germination. Journal of Fungi, 8(8), 1-30. Article 758. https://doi.org/10.3390/jof8080758
Pérez-Ortega, J., Van boxtel, R., De jonge, E. F., & Tommassen, J. (2022). Regulated Expression of lpxC Allows for Reduction of Endotoxicity in Bordetella pertussis. International Journal of Molecular Sciences, 23(14), 1-14. Article 8027. https://doi.org/10.3390/ijms23148027
Seekles, S. J., Punt, M., Savelkoel, N., Houbraken, J., Wösten, H. A. B., Ohm, R. A., & Ram, A. F. J. (2022). Genome sequences of 24 Aspergillus niger sensu stricto strains to study strain diversity, heterokaryon compatibility and sexual reproduction. G3: Genes, Genomes, Genetics, 12(7), 1-15. Article jkac124. https://doi.org/10.1093/g3journal/jkac124
De jonge, E. F., & Tommassen, J. (2022). Conditional growth defect of Bordetella pertussis and Bordetella bronchiseptica ferric uptake regulator (fur) mutants. FEMS Microbiology Letters, 369(1), 1-7. Article fnac047. https://doi.org/10.1093/femsle/fnac047
Bleichrodt, R.-J., & Wösten, H. A. B. (2022). Visualising long distance sugar transport in fungi using infrared fluorescence scanning imaging. Fungal Genetics and Biology, 161, 1-7. Article 103699. https://doi.org/10.1016/j.fgb.2022.103699
Wei, T. P., Zhang, H., Zeng, X. Y., Crous, P. W., & Jiang, Y. L. (2022). Re-evaluation of Sympoventuriaceae. Persoonia: Molecular Phylogeny and Evolution of Fungi, 48(1), 219-260. https://doi.org/10.3767/persoonia.2022.48.07
Punt, M., Seekles, S. J., van Dam, J. L., de Adelhart Toorop, C., Martina, R. R., Houbraken, J., Ram, A. F. J., Wösten, H. A. B., & Ohm, R. A. (2022). High sorbic acid resistance of Penicillium roqueforti is mediated by the SORBUS gene cluster. PLoS Genetics, 18(6), 1-25. Article e1010086. https://doi.org/10.1371/journal.pgen.1010086
de Jonge, E. F. (2022). Biogenesis of outer-membrane vesicles in Bordetella species. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/1214
van den Brule, T., Punt, M., Seekles, S. J., Segers, F. J. J., Houbraken, J., Hazeleger, W. C., Ram, A. F. J., Wösten, H. A. B., Zwietering, M. H., Dijksterhuis, J., & den Besten, H. M. W. (2022). Intraspecific variability in heat resistance of fungal conidia. Food Research International, 156, 1-9. Article 111302. https://doi.org/10.1016/j.foodres.2022.111302
Marian, I. M., Vonk, P. J., Valdes, I. D., Barry, K., Bostock, B., Carver, A., Daum, C., Lerner, H., Lipzen, A., Park, H., Schuller, M. B. P., Tegelaar, M., Tritt, A., Schmutz, J., Grimwood, J., Lugones, L. G., Choi, I.-G., Wösten, H. A. B., Grigoriev, I. V., & Ohm, R. A. (2022). The Transcription Factor Roc1 Is a Key Regulator of Cellulose Degradation in the Wood-Decaying Mushroom Schizophyllum commune. mBio, 13(3), 1-19. Article e0062822. https://doi.org/10.1128/mbio.00628-22
Vonk, P. J. (2022). Functional genomics in Schizophyllum commune. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/1035
Buijs, V. A., Groenewald, J. Z., Haridas, S., LaButti, K. M., Lipzen, A., Martin, F. M., Barry, K., Grigoriev, I. V., Crous, P. W., & Seidl, M. F. (2022). Enemy or ally: a genomic approach to elucidate the lifestyle of Phyllosticta citrichinaensis. G3: Genes, Genomes, Genetics, 12(5), 1-13. https://doi.org/10.1093/g3journal/jkac061
de Jonge, E. F., van Boxtel, R., Balhuizen, M. D., Haagsman, H. P., & Tommassen, J. (2022). Pal depletion results in hypervesiculation and affects cell morphology and outer-membrane lipid asymmetry in bordetellae. Research in Microbiology, 173(4-5), 1-13. Article 103937. https://doi.org/10.1016/j.resmic.2022.103937
Escobar, N., Keizer, E., Neer, J. V., Arentshorst, M., Strijp, J. V., Haas, P.-J., Ram, A., Punt, P., Wosten, H., & Cock, H. D. (2022). LaeA-dependent production of small molecules of Aspergillus niger that compete with specific antibodies that bind to human immune receptors. https://doi.org/10.1101/2022.04.26.489527
Suiker, I. M., & Wösten, H. A. B. (2022). Spoilage yeasts in beer and beer products. Current Opinion in Food Science, 44, 1-7. Article 100815. https://doi.org/10.1016/j.cofs.2022.100815
Chen, Q., Bakhshi, M., Balci, Y., Broders, K. D., Cheewangkoon, R., Chen, S. F., Fan, X. L., Gramaje, D., Halleen, F., Horta jung, M., Jiang, N., Jung, T., Májek, T., Marincowitz, S., Milenković, I., Mostert, L., Nakashima, C., Nurul faziha, I., Pan, M., ... Crous, P. W. (2022). Genera of phytopathogenic fungi: GOPHY 4. Studies in Mycology, 101(1), 417-564. https://doi.org/10.3114/sim.2022.101.06
Braat, N., Koster, M. C., & Wösten, H. A. B. (2022). Beneficial interactions between bacteria and edible mushrooms. Fungal Biology Reviews, 39, 60-72. https://doi.org/10.1016/j.fbr.2021.12.001
Foudraine, D. E., Aarents, C. N. M., Wattel, A. A., Van boxtel, R., Strepis, N., Ten kate, M. T., Verbon, A., Luider, T. M., Klaassen, C. H. W., Hays, J., Dekker, L. J. M., Tommassen, J., & Goessens, W. H. F. (2022). Liquid Chromatography-Tandem Mass Spectrometry Analysis Demonstrates a Decrease in Porins and Increase in CMY-2 β-Lactamases in Escherichia coli Exposed to Increasing Concentrations of Meropenem. Frontiers in Microbiology, 13, Article 793738. https://doi.org/10.3389/fmicb.2022.793738
Keizer, E. M., Valdes, I. D., McCann, B. L., Bignell, E. M., Wösten, H. A. B., & de Cock, H. (2022). The Protective Role of 1,8-Dihydroxynaphthalene-Melanin on Conidia of the Opportunistic Human Pathogen Aspergillus fumigatus Revisited: No Role in Protection against Hydrogen Peroxide and Superoxides. mSphere, 7(1), 1-11. Article e0087421. https://doi.org/10.1128/msphere.00874-21
Punt, M. (2022). Heterogeneity of food spoilage fungi. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/1010
Adamatzky, A., Ayres, P., Beasley, A. E., Chiolerio, A., Dehshibi, M. M., Gandia, A., Albergati, E., Mayne, R., Nikolaidou, A., Roberts, N., Tegelaar, M., Tsompanas, M.-A., Phillips, N., & Wösten, H. A. B. (2022). Fungal electronics. BioSystems, 212, 1-8. Article 104588. https://doi.org/10.1016/j.biosystems.2021.104588
Araújo, J. P. M., Lebert, B. M., Vermeulen, S., Brachmann, A., Ohm, R. A., Evans, H. C., & De bekker, C. (2022). Masters of the manipulator: two new hypocrealean genera, Niveomyces (Cordycipitaceae) and Torrubiellomyces (Ophiocordycipitaceae), parasitic on the zombie ant fungus Ophiocordyceps camponoti-floridani. Persoonia: Molecular Phylogeny and Evolution of Fungi, 171-194. https://doi.org/10.3767/persoonia.2022.49.05
Subroto, E., van Neer, J., Valdes, I., & de Cock, H. (2022). Growth of Aspergillus fumigatus in Biofilms in Comparison to Candida albicans. Journal of Fungi, 8(1), 1-23. Article 48. https://doi.org/10.3390/jof8010048
De jonge, E. F., Vogrinec, L., Van boxtel, R., & Tommassen, J. (2022). Inactivation of the Mla system and outer-membrane phospholipase A results in disrupted outer-membrane lipid asymmetry and hypervesiculation in Bordetella pertussis. Current Research in Microbial Sciences, 3, Article 100172. https://doi.org/10.1016/j.crmicr.2022.100172
Punt, M., Teertstra, W. R., & Wösten, H. A. B. (2022). Penicillium roqueforti conidia induced by L-amino acids can germinate without detectable swelling. Antonie van Leeuwenhoek, 115(1), 103-110. https://doi.org/10.1007/s10482-021-01686-5
Adamatzky, A., Ayres, P., Beasley, A. E., Roberts, N., & Wösten, H. A. B. (2022). Logics in Fungal Mycelium Networks. Logica Universalis, 16, 655–669 . https://doi.org/10.1007/s11787-022-00318-4

2021

Ivanova, E. P., Linklater, D. P., Aburto-Medina, A., Le, P., Baulin, V. A., Khuong Duy Nguyen, H., Curtain, R., Hanssen, E., Gervinskas, G., Hock Ng, S., Khanh Truong, V., Luque, P., Ramm, G., Wösten, H. A. B., Crawford, R. J., Juodkazis, S., & Maclaughlin, S. (2021). Antifungal versus antibacterial defence of insect wings. Journal of Colloid and Interface Science, 603, 886-897. https://doi.org/10.1016/j.jcis.2021.06.093
Gandia, A., van den Brandhof, J., Appels, F., & Jones, M. P. (2021). Flexible Fungal Materials: Shaping the Future. Trends in Biotechnology, 39(12), 1321-1331. https://doi.org/10.1016/j.tibtech.2021.03.002
Balhuizen, M. D., Versluis, C. M., Van Harten, R. M., De Jonge, E. F., Brouwers, J. F., Van De Lest, C. H. A., Veldhuizen, E. J. A., Tommassen, J., & Haagsman, H. P. (2021). PMAP-36 reduces the innate immune response induced by Bordetella bronchiseptica-derived outer membrane vesicles. Current Research in Microbial Sciences, 2, Article 100010. https://doi.org/10.1016/j.crmicr.2020.100010
Peng, M., Khosravi, C., Lubbers, R. J. M., Kun, R. S., Aguilar Pontes, M. V., Battaglia, E., Chen, C., Dalhuijsen, S., Daly, P., Lipzen, A., Ng, V., Yan, J., Wang, M., Visser, J., Grigoriev, I. V., Mäkelä, M. R., & de Vries, R. P. (2021). CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner. The Cell Surface, 7, 1-11. Article 100050. https://doi.org/10.1016/j.tcsw.2021.100050
Vonk, P. J., & Ohm, R. A. (2021). H3K4me2 ChIP-Seq reveals the epigenetic landscape during mushroom formation and novel developmental regulators of Schizophyllum commune. Scientific Reports, 11(1), 1-15. Article 8178. https://doi.org/10.1038/s41598-021-87635-8
De Jonge, E. F., Balhuizen, M. D., Van Boxtel, R., Wu, J., Haagsman, H. P., & Tommassen, J. (2021). Heat shock enhances outer-membrane vesicle release in Bordetella spp. Current Research in Microbial Sciences, 2, 1-11. Article 100009. https://doi.org/10.1016/j.crmicr.2020.100009
Seekles, S. J., Teunisse, P. P. P., Punt, M., van den Brule, T., Dijksterhuis, J., Houbraken, J., Wösten, H. A. B., & Ram, A. F. J. (2021). Preservation stress resistance of melanin deficient conidia from Paecilomyces variotii and Penicillium roqueforti mutants generated via CRISPR/Cas9 genome editing. Fungal Biology and Biotechnology, 8(1), 1-13. Article 4. https://doi.org/10.1186/s40694-021-00111-w
Hu, Z., Borsje, B. W., van Belzen, J., Willemsen, P. W. J. M., Wang, H., Peng, Y., Yuan, L., De Dominicis, M., Wolf, J., Temmerman, S., & Bouma, T. J. (2021). Mechanistic Modeling of Marsh Seedling Establishment Provides a Positive Outlook for Coastal Wetland Restoration Under Global Climate Change. Geophysical Research Letters, 48(22), 1-12. Article e2021GL095596. https://doi.org/10.1029/2021GL095596
Cozzoli, F., Shokri, M., Gomes da Conceição, T., Herman, P. M. J., Hu, Z., Soissons, L. M., Van Dalen, J., Ysebaert, T., & Bouma, T. J. (2021). Modelling spatial and temporal patterns in bioturbator effects on sediment resuspension: A biophysical metabolic approach. Science of the Total Environment, 792, 1-10. Article 148215. https://doi.org/10.1016/j.scitotenv.2021.148215
Buijs, V. A., Zuijdgeest, X. C. L., Groenewald, J. Z., Crous, P. W., & De Vries, R. P. (2021). Carbon utilization and growth-inhibition of citrus-colonizing Phyllosticta species. Fungal Biology, 125(10), 815-825. https://doi.org/10.1016/j.funbio.2021.05.003
van Brenk, B., & Wösten, H. A. B. (2021). A screening method for decoloration of xenobiotic dyes by fungi. Journal of Microbiological Methods, 188, 1-4. Article 106301. https://doi.org/10.1016/j.mimet.2021.106301
Keizer, E. M., Valdes, I. D., Forn-Cuni, G., Klijn, E., Meijer, A. H., Hillmann, F., Wösten, H. A. B., & de Cock, H. (2021). Correction: Variation of virulence of five Aspergillus fumigatus isolates in four different infection models. PLoS One, 16(9), Article e0258072. https://doi.org/10.1371/journal.pone.0258072
De Geyter, D., Vanstokstraeten, R., Crombé, F., Tommassen, J., Wybo, I., & Piérard, D. (2021). Sink drains as reservoirs of VIM-2 metallo-β-lactamase-producing Pseudomonas aeruginosa in a Belgian intensive care unit: relation to patients investigated by whole-genome sequencing. Journal of Hospital Infection, 115, 75-82. https://doi.org/10.1016/j.jhin.2021.05.010
Chaloner, T. M., Gurr, S. J., & Bebber, D. P. (2021). Plant pathogen infection risk tracks global crop yields under climate change. Nature Climate Change, 11(8), 710-715. https://doi.org/10.1038/s41558-021-01104-8
Blunden, J., Boyer, T., Dunn, R. J. H., Allen, J., Andersen, A., Hammer, G., Love-Brotak, S. E., Misch, D. J., Riddle, D. B., Veasey, S. W., Ades, M., Adler, R., Aldred, F., Allan, R. P., Allan, R., Anderson, J., Argüez, A., Arosio, C., Augustine, J. A., ... Zhu, Z. (2021). State of the climate in 2020. Bulletin of the American Meteorological Society, 102(8), 1-481. https://doi.org/10.1175/2021BAMSStateoftheClimate.1
Wang, H., Peng, Y., Wang, C., Wen, Q., Xu, J., Hu, Z., Jia, X., Zhao, X., Lian, W., Temmerman, S., Wolf, J., & Bouma, T. (2021). Mangrove Loss and Gain in a Densely Populated Urban Estuary: Lessons From the Guangdong-Hong Kong-Macao Greater Bay Area. Frontiers in marine science, 8, 1-14. Article 693450. https://doi.org/10.3389/fmars.2021.693450
Chong, P., Essoh, J. N., Arango Isaza, R. E., Keizer, P., Stergiopoulos, I., Seidl, M. F., Guzman, M., Sandoval, J., Verweij, P. E., Scalliet, G., Sierotzski, H., de Lapeyre de Bellaire, L., Crous, P. W., Carlier, J., Cros, S., Meijer, H. J. G., Peralta, E. L., & Kema, G. H. J. (2021). A world-wide analysis of reduced sensitivity to DMI fungicides in the banana pathogen Pseudocercospora fijiensis. Pest Management Science, 77(7), 3273-3288. https://doi.org/10.1002/ps.6372
Keizer, E. M., Valdes, I. D., Forn-Cuni, G., Klijn, E., Meijer, A. H., Hillman, F., Wösten, H. A. B., & de Cock, H. (2021). Variation of virulence of five Aspergillus fumigatus isolates in four different infection models. PLoS One, 16(7), Article e0252948. https://doi.org/10.1371/journal.pone.0252948
Suiker, I. M., Arkesteijn, G. J. A., Zeegers, P. J., & Wösten, H. A. B. (2021). Presence of Saccharomyces cerevisiae subsp. diastaticus in industry and nature and spoilage capacity of its vegetative cells and ascospores. International Journal of Food Microbiology, 347, 1-9. Article 109173. https://doi.org/10.1016/j.ijfoodmicro.2021.109173
Mantilla, M. J., Cabrera Díaz, C. E., Ariza-Aranguren, G., de Cock, H., Helms, J. B., Restrepo, S., Jiménez, E., & Celis Ramírez, A. M. (2021). Back to the Basics: Two Approaches for the Identification and Extraction of Lipid Droplets from Malassezia pachydermatis CBS1879 and Malassezia globosa CBS7966. Current Protocols, 1(5), 1-16. Article e122. https://doi.org/10.1002/cpz1.122
Howell, G., & Bleichrodt, R.-J. (2021). Single Cell Analysis and Sorting of Aspergillus fumigatus by Flow Cytometry. Bio-protocol, 11(8), 1-11. Article e3993. https://doi.org/10.21769/BioProtoc.3993
Keizer, E. M. (2021). Interaction between the opportunistic pathogen Aspergillus fumigatus and its host. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/632
Suiker e/v Kool, I. M. (2021). Heterogeneity between and within strains of the beer spoilage yeast Saccharomyces cerevisiae subspecies diastaticus. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University. https://doi.org/10.33540/571
Ijadpanahsaravi, M., Punt, M., Wösten, H. A. B., & Teertstra, W. R. (2021). Minimal nutrient requirements for induction of germination of Aspergillus niger conidia. Fungal Biology, 125(3), 231-238. https://doi.org/10.1016/j.funbio.2020.11.004
Crous, P. W., Lombard, L., Sandoval-Denis, M., Seifert, K. A., Schroers, H. J., Chaverri, P., Gené, J., Guarro, J., Hirooka, Y., Bensch, K., Kema, G. H. J., Lamprecht, S. C., Cai, L., Rossman, A. Y., Stadler, M., Summerbell, R. C., Taylor, J. W., Ploch, S., Visagie, C. M., ... Thines, M. (2021). Fusarium: more than a node or a foot-shaped basal cell. Studies in Mycology, 98, 1-184. Article 100116. https://doi.org/10.1016/j.simyco.2021.100116
Dell'Olmo, E., Gaglione, R., Cesaro, A., Cafaro, V., Teertstra, W. R., de Cock, H., Notomista, E., Haagsman, H. P., Veldhuizen, E. J. A., & Arciello, A. (2021). Host defence peptides identified in human apolipoprotein B as promising antifungal agents. Applied Microbiology and Biotechnology, 105(5), 1953-1964. https://doi.org/10.1007/s00253-021-11114-3
Uruén, C., Chopo-Escuin, G., Tommassen, J., Mainar-Jaime, R. C., & Arenas, J. (2021). Biofilms as promoters of bacterial antibiotic resistance and tolerance. Antibiotics, 10(1), 1-36. Article 3. https://doi.org/10.3390/antibiotics10010003
Appels, F. V. W., & Wösten, H. A. B. (2021). Mycelium Materials. In Encyclopedia of Mycology: Volume 1,2 (Vol. 2, pp. 710-718). Elsevier. https://doi.org/10.1016/B978-0-12-809633-8.21131-X
Vos, A. M., Bleichrodt, R.-J., Herman, K. C., Ohm, R. A., Scholtmeijer, K., Schmitt, H., Lugones, L. G., & Wösten, H. A. B. (2021). Cycling in degradation of organic polymers and uptake of nutrients by a litter-degrading fungus. Environmental Microbiology, 23(1), 224-238. https://doi.org/10.1111/1462-2920.15297
Dalonso, N., Petkowicz, C. L. O., Lugones, L. G., Silveira, M. L. L., & Gern, R. M. M. (2021). Comparison of cell wall polysaccharides in schizophyllum commune after changing phenotype by mutation. Anais da Academia Brasileira de Ciencias, 93, 1-17. Article e20210047. https://doi.org/10.1590/0001-3765202120210047
Pérez-Ortega, J., Van Harten, R. M., Van Boxtel, R., Plisnier, M., Louckx, M., Ingels, D., Haagsman, H. P., & Tommassen, J. (2021). Reduction of endotoxicity in Bordetella bronchiseptica by lipid A engineering: Characterization of lpxL1 and pagP mutants. Virulence, 12(1), 1452-1468. https://doi.org/10.1080/21505594.2021.1929037
Arenas, J., Szabo, Z., van der Wal, J., Maas, C., Riaz, T., Tønjum, T., & Tommassen, J. (2021). Serum proteases prevent bacterial biofilm formation: role of kallikrein and plasmin. Virulence, 12(1), 2902-2917. https://doi.org/10.1080/21505594.2021.2003115

2020

Arenas, J., Catón, L., Van Den Hoeven, T., De Maat, V., Cruz Herrero, J., & Tommassen, J. (2020). The outer-membrane protein MafA of Neisseria meningitidis constitutes a novel protein secretion pathway specific for the fratricide protein MafB. Virulence, 11(1), 1701-1715. https://doi.org/10.1080/21505594.2020.1851940
Ehren, H. L., Appels, F. V. W., Houben, K., Renault, M. A. M., Wösten, H. A. B., & Baldus, M. (2020). Characterization of the cell wall of a mushroom forming fungus at atomic resolution using solid-state NMR spectroscopy. Cell Surface, 6, 1-10. Article 100046. https://doi.org/10.1016/j.tcsw.2020.100046
Arenas, J., Pupo, E., Phielix, C., David, D., Zariri, A., Zamyatina, A., Tommassen, J., & Van Der Ley, P. (2020). Shortening the Lipid A Acyl Chains of Bordetella pertussis Enables Depletion of Lipopolysaccharide Endotoxic Activity. Vaccines, 8(4), Article 594. https://doi.org/10.3390/vaccines8040594
Valdes, I. D., Hart de Ruijter, A. B. P., Torres, C. J., Breuker, J. C. A., Wösten, H. A. B., & de Cock, H. (2020). The sino-nasal warzone: transcriptomic and genomic studies on sino-nasal aspergillosis in dogs. npj Biofilms and Microbiomes, 6(1), 1-12. Article 51. https://doi.org/10.1038/s41522-020-00163-7
van den Brule, T., Lee, C. L. S., Houbraken, J., Haas, P. J., Wösten, H., & Dijksterhuis, J. (2020). Conidial heat resistance of various strains of the food spoilage fungus Paecilomyces variotii correlates with mean spore size, spore shape and size distribution. Food Research International, 137, 1-9. Article 109514. https://doi.org/10.1016/j.foodres.2020.109514
van Eijk, M., Boerefijn, S., Rosa, M., Morren, M. J. H., van der Ent, C. K., Kraak, B., Dijksterhuis, J., Valdes Barrera, I. D., Haagsman, H. P., & de Cock, H. (2020). Cathelicidin-inspired antimicrobial peptides as novel antifungal compounds. Medical Mycology, 58(8), 1073–1084. https://doi.org/10.1093/mmy/myaa014
Steinberg, G., & Gurr, S. J. (2020). Fungi, fungicide discovery and global food security. Fungal Genetics and Biology, 144, Article 103476. https://doi.org/10.1016/j.fgb.2020.103476
Ohm, R. A. (2020). Fungal Genomics. In J. P. Benz, & K. Schipper (Eds.), Genetics and Biotechnology (3 ed., pp. 207-224). (The Mycota; Vol. 2). Springer. https://doi.org/10.1007/978-3-030-49924-2_9
Miyauchi, S., Kiss, E., Kuo, A., Drula, E., Kohler, A., Sánchez-García, M., Morin, E., Andreopoulos, B., Barry, K. W., Bonito, G., Buée, M., Carver, A., Chen, C., Cichocki, N., Clum, A., Culley, D., Crous, P. W., Fauchery, L., Girlanda, M., ... Martin, F. M. (2020). Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits. Nature Communications, 11(1), Article 5125. https://doi.org/10.1038/s41467-020-18795-w
Keizer, E. M., Wösten, H. A. B., & de Cock, H. (2020). EphA2-Dependent Internalization of A. fumigatus Conidia in A549 Lung Cells Is Modulated by DHN-Melanin. Frontiers in Microbiology, 11, 1-12. Article 534118. https://doi.org/10.3389/fmicb.2020.534118
Punt, M., van den Brule, T., Teertstra, W. R., Dijksterhuis, J., den Besten, H. M. W., Ohm, R. A., & Wösten, H. A. B. (2020). Impact of maturation and growth temperature on cell-size distribution, heat-resistance, compatible solute composition and transcription profiles of Penicillium roqueforti conidia. Food Research International, 136, 1-12. Article 109287. https://doi.org/10.1016/j.foodres.2020.109287
Herman, K. C., Wösten, H. A. B., Fricker, M. D., & Bleichrodt, R. J. (2020). Growth induced translocation effectively directs an amino acid analogue to developing zones in Agaricus bisporus. Fungal Biology, 124(12), 1013-1023. https://doi.org/10.1016/j.funbio.2020.09.002
Sonnenberg, A. S. M., Sedaghat-Telgerd, N., Lavrijssen, B., Ohm, R. A., Hendrickx, P. M., Scholtmeijer, K., Baars, J. J. P., & van Peer, A. (2020). Telomere-to-telomere assembled and centromere annotated genomes of the two main subspecies of the button mushroom Agaricus bisporus reveal especially polymorphic chromosome ends. Scientific Reports, 10(1), Article 14653. https://doi.org/10.1038/s41598-020-71043-5
Torres, M., de Cock, H., & Celis Ramírez, A. M. (2020). In Vitro or In Vivo Models, the Next Frontier for Unraveling Interactions between Malassezia spp. and Hosts. How Much Do We Know? Journal of fungi (Basel, Switzerland), 6(3), Article 155. https://doi.org/10.3390/jof6030155
Goles, E., Tsompanas, M. A., Adamatzky, A., Tegelaar, M., Wosten, H. A. B., & Martínez, G. J. (2020). Computational universality of fungal sandpile automata. Physics Letters, Section A: General, Atomic and Solid State Physics, 384(22), 1-8. Article 126541. https://doi.org/10.1016/j.physleta.2020.126541
Will, I., Das, B., Trinh, T., Brachmann, A., Ohm, R. A., & de Bekker, C. (2020). Genetic underpinnings of host manipulation by ophiocordyceps as revealed by comparative transcriptomics. G3: Genes, Genomes, Genetics, 10(7), 2275-2296. https://doi.org/10.1534/g3.120.401290
Wrobel, A., Saragliadis, A., Pérez-Ortega, J., Sittman, C., Göttig, S., Liskiewicz, K., Spence, M. H., Schneider, K., Leo, J. C., Arenas, J., & Linke, D. (2020). The inverse autotransporters of Yersinia ruckeri, YrInv and YrIlm, contribute to biofilm formation and virulence. Environmental Microbiology, 22(7), 2939-2955. https://doi.org/10.1111/1462-2920.15051
Celis Ramírez, A. M., Amézquita, A., Cardona Jaramillo, J. E. C., Matiz-Cerón, L. F., Andrade-Martínez, J. S., Triana, S., Mantilla, M. J., Restrepo, S., Barrios, A. F. G., & de Cock, H. (2020). Analysis of Malassezia Lipidome Disclosed Differences Among the Species and Reveals Presence of Unusual Yeast Lipids. Frontiers in cellular and infection microbiology, 10, Article 338. https://doi.org/10.3389/fcimb.2020.00338
Appels, F. V. W., van den Brandhof, J. G., Dijksterhuis, J., de Kort, G. W., & Wösten, H. A. B. (2020). Fungal mycelium classified in different material families based on glycerol treatment. Communications Biology, 3(1), 1-5. Article 334. https://doi.org/10.1038/s42003-020-1064-4
Kölle, M., Horta, M. A. C., Nowrousian, M., Ohm, R. A., Benz, J. P., & Pilgård, A. (2020). Degradative Capacity of Two Strains of Rhodonia placenta: From Phenotype to Genotype. Frontiers in Microbiology, 11, 1-15. Article 1338. https://doi.org/10.3389/fmicb.2020.01338
Miyauchi, S., Hage, H., Drula, E., Lesage-Meessen, L., Berrin, J.-G., Navarro, D., Favel, A., Chaduli, D., Grisel, S., Haon, M., Piumi, F., Levasseur, A., Lomascolo, A., Ahrendt, S., Barry, K., LaButti, K. M., Chevret, D., Daum, C., Mariette, J., ... Rosso, M.-N. (2020). Conserved white rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus. DNA Research, 27(2), 1-14. https://doi.org/10.1093/dnares/dsaa011
Haridas, S., Albert, R., Binder, M., Bloem, J., LaButti, K., Salamov, A., Andreopoulos, B., Baker, S. E., Barry, K., Bills, G., Bluhm, B. H., Cannon, C., Castanera, R., Culley, D. E., Daum, C., Ezra, D., González, J. B., Henrissat, B., Kuo, A., ... Grigoriev, I. V. (2020). 101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens. Studies in Mycology, 96, 141-153. https://doi.org/10.1016/j.simyco.2020.01.003
Adamatzky, A., Tegelaar, M., Wosten, H. A. B., Powell, A. L., Beasley, A. E., & Mayne, R. (2020). On Boolean gates in fungal colony. BioSystems, 193-194, 1-9. Article 104138. https://doi.org/10.1016/j.biosystems.2020.104138
Wösten, H. A. B. (2020). Jos Wessels, 30 May 1934-30 October 2019. Mycopathologia, 112(4), 852-855. https://doi.org/10.1080/00275514.2020.1754055
Tegelaar, M., van der Lans, G. P. A., & Wösten, H. A. B. (2020). Apical but not sub-apical hyphal compartments are self-sustaining in growth. Antonie van Leeuwenhoek, 113, 697-706. https://doi.org/10.1007/s10482-020-01383-9
Meyer, V., Basenko, E. Y., Benz, J. P., Braus, G. H., Caddick, M. X., Csukai, M., de Vries, R. P., Endy, D., Frisvad, J. C., Gunde-Cimerman, N., Haarmann, T., Hadar, Y., Hansen, K., Johnson, R. I., Keller, N. P., Kraševec, N., Mortensen, U. H., Perez, R., Ram, A. F. J., ... Wösten, H. A. B. (2020). Growing a circular economy with fungal biotechnology: a white paper. Fungal Biology and Biotechnology, 7, 1-23. Article 5. https://doi.org/10.1186/s40694-020-00095-z
Steinberg, G., Schuster, M., Gurr, S. J., Schrader, T. A., Schrader, M., Wood, M., Early, A., & Kilaru, S. (2020). A lipophilic cation protects crops against fungal pathogens by multiple modes of action. Nature Communications, 11(1), Article 1608. https://doi.org/10.1038/s41467-020-14949-y
Sastoque, A., Triana, S., Ehemann, K., Suarez, L., Restrepo, S., Wösten, H., de Cock, H., Fernández-Niño, M., González Barrios, A. F., & Celis Ramírez, A. M. (2020). New Therapeutic Candidates for the Treatment of Malassezia pachydermatis -Associated Infections. Scientific Reports, 10(1), Article 4860. https://doi.org/10.1038/s41598-020-61729-1
Tegelaar, M. (2020). Fungal heterogeneity; from zones to compartments. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University.
van den Brule, T., Punt, M., Teertstra, W., Houbraken, J., Wösten, H., & Dijksterhuis, J. (2020). The most heat-resistant conidia observed to date are formed by distinct strains of Paecilomyces variotii. Environmental Microbiology, 22(3), 986-999. https://doi.org/10.1111/1462-2920.14791
Appels, F. V. W. (2020). The use of fungal mycelium for the production of bio-based materials. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Universiteit Utrecht.
Tegelaar, M., Aerts, D., Teertstra, W. R., & Wösten, H. A. B. (2020). Spatial induction of genes encoding secreted proteins in micro-colonies of Aspergillus niger. Scientific Reports, 10(1), Article 1536. https://doi.org/10.1038/s41598-020-58535-0
Tegelaar, M., Bleichrodt, R.-J., Nitsche, B., Ram, A. F. J., & Wösten, H. A. B. (2020). Subpopulations of hyphae secrete proteins or resist heat stress in Aspergillus oryzae colonies. Environmental Microbiology, 22(1), 447-455. https://doi.org/10.1111/1462-2920.14863
Arenas Busto, J. A., Paganelli, F. L., Rodríguez-Castaño, P., Cano-Crespo, S., van der Ende, A., van Putten, J. P. M., & Tommassen, J. P. M. (2020). Expression of the Gene for Autotransporter AutB of Neisseria meningitidis Affects Biofilm Formation and Epithelial Transmigration. In S. Bleves, R. Voulhoux, B. Ize, T. Sana, & D. Monack (Eds.), Protein Export and Secretion Among Bacterial Pathogens (pp. 08-24). Frontiers Media SA.
Adamatzky, A., Goles, E., Martínez, G. J., Tsompanas, M. A., Tegelaar, M., & Wosten, H. A. B. (2020). Fungal automata. Complex Systems, 29(4), 759-778. https://doi.org/10.25088/ComplexSystems.29.4.759

2019

Adamatzky, A., Ayres, P., Belotti, G., & Wosten, H. (2019). Fungal architecture. (pp. 1-19). arXiv. https://doi.org/10.48550/arXiv.1912.13262
Adamatzky, A., Ayres, P., Belotti, G., & Wösten, H. (2019). Fungal architecture position paper. International Journal of Unconventional Computing, 14(5-6), 397-411. https://www.oldcitypublishing.com/journals/ijuc-home/ijuc-issue-contents/ijuc-volume-14-number-5-6-2019/ijuc-14-5-6-p-397-411/
Hawksworth, D. L., Pawlowska, J., Bakhshi, M., Zare, R., Khodaparast, A., Silva-Flores, P., Salazar-Vidal, V., Diban, M. J., Troncoso, S., Narvaez, F., Soto, D., Caceres, V., Valdes, C., Knudsen, H., Rikkinen, J. K., Printzen, C., Aoki, T., Telleria, M. T., Martin, M. P., ... Pirozynski, K. A. (2019). MycoNews 2019: editorials, news, reports, awards, personalia, book news, and correspondence. IMA Fungus, 10(1). https://doi.org/10.1186/s43008-019-0024-4
Khosravi, C., Kowalczyk, J. E., Chroumpi, T., Battaglia, E., Aguilar Pontes, M., Peng, M., Wiebenga, A., Ng, V., Lipzen, A., He, G., Bauer, D., Grigoriev, I. V., & De Vries, R. P. (2019). Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network. BMC Genomics, 20(1), Article 853. https://doi.org/10.1186/s12864-019-6235-7
Patyshakuliyeva, A., Falkoski, D. L., Wiebenga, A., Timmermans, K., & De Vries, R. P. (2019). Macroalgae Derived Fungi Have High Abilities to Degrade Algal Polymers. Microorganisms, 8(1). https://doi.org/10.3390/microorganisms8010052
Wösten, H. A. B. (2019). Filamentous fungi for the production of enzymes, chemicals and materials. Current Opinion in Biotechnology, 59, 65-70. https://doi.org/10.1016/j.copbio.2019.02.010
Valdes Barrera, I. D. (2019). Host-pathogen interactions at the sino-nasal surface of dogs. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University.
Coconi Linares, N., Di Falco, M., Benoit-gelber, I., Gruben, B. S., Peng, M., Tsang, A., Mäkelä, M. R., & De Vries, R. P. (2019). The presence of trace components significantly broadens the molecular response of Aspergillus niger to guar gum. New Biotechnology, 51, 57-66. https://doi.org/10.1016/j.nbt.2019.02.005
Arenas, J., Pupo, E., De Jonge, E., Pérez-Ortega, J., Schaarschmidt, J., Van Der Ley, P., & Tommassen, J. (2019). Substrate specificity of the pyrophosphohydrolase LpxH determines the asymmetry of Bordetella pertussis lipid A. Journal of Biological Chemistry, 294(20), 7982-7989. https://doi.org/10.1074/jbc.RA118.004680
Tan, Y. P. (2019). Taxonomy and biodiversity of plant pathogenic fungi from Australia. [Doctoral thesis 2 (Research NOT UU / Graduation UU), Universiteit Utrecht]. Utrecht University.
Mbareche, H., Veillette, M., Teertstra, W., Kegel, W., Bilodeau, G. J., Wösten, H. A. B., & Duchaine, C. (2019). Fungal Cells Recovery From Air Samples: A Tale of Loss And Gain. Applied and Environmental Microbiology, 85(9), 1-15. Article e02941-18. https://doi.org/10.1128/AEM.02941-18
Sollai, M., Villanueva, L., Hopmans, E. C., Keil, R. G., & Damste, J. S. S. (2019). Archaeal Sources of Intact Membrane Lipid Biomarkers in the Oxygen Deficient Zone of the Eastern Tropical South Pacific. https://doi.org/10.3389/fmicb.2019.00765
Krizsán, K., Almási, É., Merényi, Z., Sahu, N., Virágh, M., Kószó, T., Mondo, S., Kiss, B., Bálint, B., Kües, U., Barry, K., Cseklye, J., Hegedüs, B., Henrissat, B., Johnson, J., Lipzen, A., Ohm, R. A., Nagy, I., Pangilinan, J., ... Nagy, L. G. (2019). Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi. Proceedings of the National Academy of Sciences of the United States of America, 116(15), 7409-7418. https://doi.org/10.1073/pnas.1817822116
Sepčić, K., Sabotič, J., Ohm, R. A., Drobne, D., & Kokalj, A. J. (2019). First evidence of cholinesterase-like activity in Basidiomycota. PLoS One, 14(4), Article 0216077. https://doi.org/10.1371/journal.pone.0216077
Varga, T., Krizsán, K., Földi, C., Dima, B., Sánchez-García, M., Sánchez-Ramírez, S., Szöllősi, G. J., Szarkándi, J. G., Papp, V., Albert, L., Andreopoulos, W., Angelini, C., Antonín, V., Barry, K. W., Bougher, N. L., Buchanan, P., Buyck, B., Bense, V., Catcheside, P., ... Nagy, L. G. (2019). Megaphylogeny resolves global patterns of mushroom evolution. Nature Ecology and Evolution, 3(4), 668-678. https://doi.org/10.1038/s41559-019-0834-1
Aerts, D., van den Bergh, S. G., Post, H., Altelaar, M. A. F., Arentshorst, M., Ram, A. F. J., Ohm, R. A., & Wösten, H. A. B. (2019). FlbA-Regulated Gene rpnR Is Involved in Stress Resistance and Impacts Protein Secretion when Aspergillus niger Is Grown on Xylose. Applied and Environmental Microbiology, 85(2), 1-12. Article e02282-18. https://doi.org/10.1128/AEM.02282-18
Appels, F. V. W., Camere, S., Montalti, M., Karana, E., Jansen, K. M. B., Dijksterhuis, J., Krijgsheld, P., & Wösten, H. A. B. (2019). Fabrication factors influencing mechanical, moisture- and water-related properties of mycelium-based composites. Materials and Design, 161, 64-71. https://doi.org/10.1016/j.matdes.2018.11.027
Arenas, J., Bossers-de Vries, R., Harders-Westerveen, J., Buys, H., Ruuls-van Stalle, L. M. F., Stockhofe-Zurwieden, N., Zaccaria, E., Tommassen, J., Wells, J. M., Smith, H. E., & de Greeff, A. (2019). In vivo transcriptomes of Streptococcus suis reveal genes required for niche-specific adaptation and pathogenesis. Virulence, 10(1), 334-351. https://doi.org/10.1080/21505594.2019.1599669
Ordonez, S. R., van Eijk, M., Escobar Salazar, N., de Cock, H., Veldhuizen, E. J. A., & Haagsman, H. P. (2019). Antifungal activities of surfactant protein D in an environment closely mimicking the lung lining. Molecular Immunology, 105, 260-269. https://doi.org/10.1016/j.molimm.2018.12.003
Jan Vonk, P., Escobar, N., Wösten, H. A. B., Lugones, L. G., & Ohm, R. A. (2019). High-throughput targeted gene deletion in the model mushroom Schizophyllum commune using pre-assembled Cas9 ribonucleoproteins. Scientific Reports, 9(1), 1-8. Article 7632. https://doi.org/10.1038/s41598-019-44133-2
Wang, F., Zhang, L., Wu, S., Li, W., Sun, M., Feng, W., Ding, D., Yeung-Shan Wong, S., Zhu, P., Evans, G. J., Wing, Y. K., Zhang, J., Vlaanderen, J. J., Vermeulen, R. C. H., Zhang, Y., Chan, EY.-Y., Li, Z., & Tse, L. A. (2019). Night shift work and abnormal liver function: Is non-alcohol fatty liver a necessary mediator? Occupational and Environmental Medicine, 76(2), 83-89. https://doi.org/10.1136/oemed-2018-105273

2018

Urquhart, A. S., Mondo, S. J., Mäkelä, M. R., Hane, J. K., Wiebenga, A., He, G., Mihaltcheva, S., Pangilinan, J., Lipzen, A., Barry, K., de Vries, R. P., Grigoriev, I. V., & Idnurm, A. (2018). Genomic and Genetic Insights Into a Cosmopolitan Fungus, Paecilomyces variotii (Eurotiales). Frontiers in Microbiology, 9, Article 3058. https://doi.org/10.3389/fmicb.2018.03058
Wu, B., Xu, Z., Knudson, A., Carlson, A., Chen, N., Kovaka, S., LaButti, K., Lipzen, A., Pennachio, C., Riley, R., Schakwitz, W., Umezawa, K., Ohm, R. A., Grigoriev, I. V., Nagy, L. G., Gibbons, J., & Hibbett, D. (2018). Genomics and Development of Lentinus tigrinus: A White-Rot Wood-Decaying Mushroom with Dimorphic Fruiting Bodies. Genome Biology and Evolution, 10(12), 3250-3261. https://doi.org/10.1093/gbe/evy246
Vesth, T. C., Nybo, J. L., Theobald, S., Frisvad, J. C., Larsen, T. O., Nielsen, K. F., Hoof, J. B., Brandl, J., Salamov, A., Riley, R., Gladden, J. M., Phatale, P., Nielsen, M. T., Lyhne, E. K., Kogle, M. E., Strasser, K., McDonnell, E., Barry, K., Clum, A., ... Andersen, M. R. (2018). Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri. Nature Genetics, 50, 1688-1695. https://doi.org/10.1038/s41588-018-0246-1
Zacchetti, B., Wösten, H. A. B., & Claessen, D. (2018). Multiscale heterogeneity in filamentous microbes. Biotechnology Advances, 36(8), 2138-2149. https://doi.org/10.1016/j.biotechadv.2018.10.002
Kurucz, V., Kiss, B., Szigeti, Z. M., Nagy, G., Orosz, E., Hargitai, Z., Harangi, S., Wiebenga, A., de Vries, R. P., Pócsi, I., & Emri, T. (2018). Physiological background of the remarkably high Cd2+ tolerance of the Aspergillus fumigatus Af293 strain. Journal of Basic Microbiology, 58(11), 957-967. https://doi.org/10.1002/jobm.201800200
Valdes, I. D., van den Berg, J., Haagsman, A., Escobar, N., Meis, J. F., Hagen, F., Haas, P. J., Houbraken, J., Wösten, H. A. B., & de Cock, H. (2018). Comparative genotyping and phenotyping of Aspergillus fumigatus isolates from humans, dogs and the environment. BMC Microbiology, 18(1), 1-11. Article 118. https://doi.org/10.1186/s12866-018-1244-2
Vonk, P. J., & Ohm, R. A. (2018). The role of homeodomain transcription factors in fungal development. Fungal Biology Reviews, 32(4), 219-230. https://doi.org/10.1016/j.fbr.2018.04.002
Emri, T., Antal, K., Riley, R., Karanyi, Z., Miskel, M., Orosz, E., Baker, S. E., Wiebenga, A., de Vries, R. P., & Pocsi, I. (2018). Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance. Studies in Mycology, 91, 23-36. https://doi.org/10.1016/j.simyco.2018.10.003
Mäkelä, M. R., DiFalco, M., McDonnell, E., Nguyen, T. T. M., Wiebenga, A., Hildén, K., Peng, M., Grigoriev, I. V., Tsang, A., & de Vries, R. P. (2018). Genomic and exoproteomic diversity in plant biomass degradation approaches among Aspergilli. Studies in Mycology, 91, 79-99. https://doi.org/10.1016/j.simyco.2018.09.001
Escobar, N., Valdes, I. D., Keizer, E. M., Ordonez, S. R., Ohm, R. A., Wösten, H. A. B., & de Cock, H. (2018). Expression profile analysis reveals that Aspergillus fumigatus but not Aspergillus niger makes type II epithelial lung cells less immunological alert. BMC Genomics, 19(1), 1-17. Article 534. https://doi.org/10.1186/s12864-018-4895-3
Keizer, E. M., Valdes, I. D., Van Baelen, F., Schinkel, M., Wösten, H. A. B., & Cock, H. (2018). Alternative mechanisms of protection of Aspergillus fumigatus conidia against Reactive Oxygen Species. Medical Mycology, 56(Suppl 2), S156. https://doi.org/10.1093/mmy/myy036
De Cock, H., Celis, A., Triana, S., & Wösten, H. (2018). Characterization of growth of lipid-dependent Malassezia yeast species, members of the skin mycobiome. Medical Mycology, 56(suppl 2), S16. https://doi.org/10.1093/mmy/myy036
Keizer, E. M., Escobar, N., Valdes, I. D., Ordonez, S. R., Ohm, R. A., Wösten, H. A. B., & Cock, H. (2018). Differential gene expression of Aspergillus fumigatus and Aspergillus niger interacting with epithelial lung cells. Medical Mycology, 56(Suppl 2), S17. https://doi.org/10.1093/mmy/myy036
Valdes, I. D., Wösten, H. A. B., De Cock, H., Escobar, N., Van Den Berg, J., Haagsman, A., F Meis, J., Hagen, F., Houbraken, J., & Haas, P. J. (2018). Heterogeneity and within-host adaption observed in clinical isolates of Aspergillus fumigatus. Medical Mycology, 56(Suppl 2), 41. https://doi.org/10.1093/mmy/myy036
Celis, A. M., Cock, H., Triana, S., Cardona, J., Restrepo, S., Gonzalez, A., & Wösten, H. A. B. (2018). Identification and characterization of lipid droplets in Malassezia furfur. Medical Mycology, 56(Suppl 2), 150. https://doi.org/10.1093/mmy/myy036
Valdes, I. D., Wösten, H. A. B., & De Cock, H. (2018). Transcriptomic analysis of non-invasive infections by Aspergillus fumigatus: The case of sino-nasal aspergillosis (SNA) in dogs. Medical Mycology, 56(Suppl 2), S41. https://doi.org/10.1093/mmy/myy036
Gehrmann, T., Pelkmans, J. F., Ohm, R. A., Vos, A. M., Sonnenberg, A. S. M., Baars, J. J. P., Wösten, H. A. B., Reinders, M. J. T., & Abeel, T. (2018). Nucleus-specific expression in the multinuclear mushroom-forming fungus reveals different nuclear regulatory programs. Proceedings of the National Academy of Sciences of the United States of America, 115(17), 4429-4434. https://doi.org/10.1073/pnas.1721381115
Knapp, D. G., Németh, J. B., Barry, K., Hainaut, M., Henrissat, B., Johnson, J., Kuo, A., Lim, J. H. P., Lipzen, A., Nolan, M., Ohm, R. A., Tamás, L., Grigoriev, I. V., Spatafora, J. W., Nagy, L. G., & Kovács, G. M. (2018). Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi. Scientific Reports, 8(1), Article 6321. https://doi.org/10.1038/s41598-018-24686-4
Aerts, D. (2018). Regulators controlled by the sporulation gene flbA of Aspergillus niger. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University.
Macìas-Pérez, J. F., Delabrouille, J., De Bernardis, P., Bouchet, F. R., Achúcarro, A., Ade, P. A. R., Allison, R., Arroja, F., Artal, E., Ashdown, M., Baccigalupi, C., Ballardini, M., Banday, A. J., Banerji, R., Barbosa, D., Bartlett, J., Bartolo, N., Basak, S., Baselmans, J. J. A., ... Zannoni, M. (2018). Exploring cosmic origins with CORE: Survey requirements and mission design. Journal of Cosmology and Astroparticle Physics, 2018(4), Article 014. https://doi.org/10.1088/1475-7516/2018/04/014
Khosravi, C., Battaglia, E., Kun, R. S., Dalhuijsen, S., Visser, J., Aguilar-Pontes, M. V., Zhou, M., Heyman, H. M., Kim, Y. M., Baker, S. E., & de Vries, R. P. (2018). Blocking hexose entry into glycolysis activates alternative metabolic conversion of these sugars and upregulates pentose metabolism in Aspergillus nidulans. BMC Genomics, 19(1), Article 214. https://doi.org/10.1186/s12864-018-4609-x
Lopez, D., Ribeiro, S., Label, P., Fumanal, B., Venisse, J.-S., Kohler, A., de Oliveira, R. R., LaButti, K. M., Lipzen, A., Lail, K., Bauer, D., Ohm, R. A., Barry, K. W., Spatafora, J. W., Grigoriev, I. V., Martin, F. M., & Pujade-Renaud, V. (2018). Genome-Wide Analysis of Leaf Fall Disease Putative Effectors. Frontiers in Microbiology, 9. https://doi.org/10.3389/fmicb.2018.00276
Segers, F. J. J., Wösten, H. A. B., & Dijksterhuis, J. (2018). Aspergillus niger mutants affected in conidial pigmentation do not have an increased susceptibility to water stress during growth at low water activity. Letters in Applied Microbiology, 66(3), 238-243. https://doi.org/10.1111/lam.12846
Martino, E., Morin, E., Grelet, G.-A., Kuo, A., Kohler, A., Daghino, S., Barry, K. W., Cichocki, N., Clum, A., Dockter, R. B., Hainaut, M., Kuo, R. C., LaButti, K. M., Lindahl, B. D., Lindquist, E. A., Lipzen, A., Khouja, H.-R., Magnuson, J., Murat, C., ... Perotto, S. (2018). Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists. New Phytologist, 217(3), 1213-1229. https://doi.org/10.1111/nph.14974
Gerritsen, M. G., Brinkman, P., Escobar Salazar, N., Bos, L. D., de Heer, K., Meijer, M., Janssen, H.-G., de Cock, H., Wösten, H. A. B., Visser, C. E., van Oers, M. H. J., & Sterk, P. J. (2018). Profiling of volatile organic compounds produced by clinical Aspergillus isolates using gas chromatography-mass spectrometry. Medical Mycology, 56(2), 253–256. https://doi.org/10.1093/mmy/myx035
Cerullo, G., Houbraken, J., Granchi, Z., Pepe, O., Varriale, S., Ventorino, V., Chin-A-Woeng, T., Meijer, M., de Vries, R. P., & Faraco, V. (2018). Draft Genome Sequence of Talaromyces adpressus. Genome Announcements, 6(2), Article e01430-17. https://doi.org/10.1128/genomeA.01430-17
Sun, X. M., Feng, W., Wang, F., Li, P., Li, Z., Li, M., Tse, G., Vlaanderen, J., Vermeulen, R., & Tse, L. A. (2018). Meta-analysis on shift work and risks of specific obesity types. Obesity Reviews, 19(1), 28–40. https://doi.org/10.1111/obr.12621
Läkk, H., Krijgsheld, P., Montalti, M., & Wösten, H. (2018). Fungal based biocomposite for habitat structures on the Moon and Mars. Proceedings of the International Astronautical Congress, IAC, 2018-October, 1-11.
Appels, F. V. W., Dijksterhuis, J., Lukasiewicz, C. E., Jansen, K. M. B., Wösten, H. A. B., & Krijgsheld, P. (2018). Hydrophobin gene deletion and environmental growth conditions impact mechanical properties of mycelium by affecting the density of the material. Scientific Reports, 8, 1-7. Article 4703. https://doi.org/10.1038/s41598-018-23171-2
Grimm, D., & Wösten, H. A. B. (2018). Mushroom cultivation in the circular economy. Applied Microbiology and Biotechnology, 102(18), 7795-7803. https://doi.org/10.1007/s00253-018-9226-8
Vos, A. M., Jurak, E., de Gijsel, P., Ohm, R. A., Henrissat, B., Lugones, L. G., Kabel, M. A., & Wösten, H. A. B. (2018). Production of α-1,3-L-arabinofuranosidase active on substituted xylan does not improve compost degradation by Agaricus bisporus. PLoS One, 13(7), 1-12. Article e0201090. https://doi.org/10.1371/journal.pone.0201090
Varriale, S., Houbraken, J., Granchi, Z., Pepe, O., Cerullo, G., Ventorino, V., Chin-A-woeng, T., Meijer, M., Riley, R., Grigoriev, I. V., Henrissat, B., de Vries, R. P., & Faraco, V. (2018). Talaromyces borbonicus, sp. nov., a novel fungus from biodegraded arundo donax with potential abilities in lignocellulose conversion. Mycopathologia, 110(2), 316-324. https://doi.org/10.1080/00275514.2018.1456835

2017

De Bekker, C., Ohm, R. A., Evans, H. C., Brachmann, A., & Hughes, D. P. (2017). Ant-infecting Ophiocordyceps genomes reveal a high diversity of potential behavioral manipulation genes and a possible major role for enterotoxins. Scientific Reports, 7(1), Article 12508. https://doi.org/10.1038/s41598-017-12863-w
Vos, A., Heijboer, A., Boschker, H. T. S., Bonnet, B., Lugones, L., & Wosten, H. (2017). Microbial biomass in compost during colonization of Agaricus bisporus. AMB Express, 7, 1-7. Article 12. https://doi.org/10.1186/s13568-016-0304-y
Vos, A., Jurak, E., Pelkmans, J., Herman, K., Pels, G., Baars, J. J., Hendrix, E., Kabel, M. A., Lugones, L. G., & Wosten, H. (2017). H2O2 as a candidate bottleneck for MnP activity during cultivation of Agaricus bisporus in compost. AMB Express, 7(1), 1-9. Article 124. https://doi.org/10.1186/s13568-017-0424-z
Celis Ramirez, A. M. (2017). Unraveling lipid metabolism in lipid-dependent pathogenic Malassezia yeasts. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University.
Celis Ramirez, A. M., Wösten, HAB., Triana, S., Restrepo, S., & de Cock, J. J. P. A. (2017). Malassezia spp. beyond The Mycobiota. SM Dermatology Journal, 3(3), 1-10. Article 1019. https://doi.org/10.36876/smdj.1019
Aerts, D., Hauer, E. E., Ohm, R. A., Arentshorst, M., Teertstra, W. R., Phippen, C., Ram, A. F. J., Frisvad, J. C., & Wösten, H. A. B. (2017). The FlbA-regulated predicted transcription factor Fum21 of Aspergillus niger is involved in fumonisin production. Antonie van Leeuwenhoek, 111, 311-322. https://doi.org/10.1007/s10482-017-0952-1
Triana, S., de Cock, H., Ohm, R. A., Danies, G., Wösten, H. A. B., Restrepo, S., González Barrios, A. F., & Celis Ramirez, A. (2017). Lipid Metabolic Versatility in Malassezia spp. Yeasts Studied through Metabolic Modeling. Frontiers in Microbiology, 8, 1-18. Article 1772. https://doi.org/10.3389/fmicb.2017.01772
Martínez-Medina, A., Appels, F. V. W., & van Wees, S. C. M. (2017). Impact of salicylic acid- and jasmonic acid-regulated defences on root colonization by Trichoderma harzianum T-78. Plant Signaling and Behavior, 12(8), Article e1345404. https://doi.org/10.1080/15592324.2017.1345404
Uehling, J., Gryganskyi, A., Hameed, K., Tschaplinski, T., Misztal, P. K., Wu, S., Desirò, A., Vande Pol, N., Du, Z., Zienkiewicz, A., Zienkiewicz, K., Morin, E., Tisserant, E., Splivallo, R., Hainaut, M., Henrissat, B., Ohm, R., Kuo, A., Yan, J., ... Bonito, G. (2017). Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens. Environmental Microbiology, 19(8), 2964-2983. https://doi.org/10.1111/1462-2920.13669
Mäkelä, M. R., Bouzid, O., Ruiz-Robleto, J., Post, H., Peng, M., Heck, A., Altelaar, M., & de Vries, R. P. (2017). Cultivation of Podospora anserina on soybean hulls results in an efficient enzyme cocktail for plant biomass hydrolysis. New Biotechnology, 37(Part B), 162-171. https://doi.org/10.1016/j.nbt.2017.02.002
Vos, A. M. (2017). Compost degradation and growth of Agaricus bisporus. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University.
Tommassen, J., & Arenas Busto, J. (2017). Biological Functions of the Secretome of Neisseria meningitidis. Frontiers in cellular and infection microbiology, 7, Article 256. https://doi.org/10.3389/fcimb.2017.00256
van Eijk, M., van der Ent, C. K., Aerts, H. G., Kristensen, M. I., de Cock, H., van Dijk, A., Keijzer, B. J., & Haagsman, H. P. (2017). Novel antimicrobial peptides to fight infections in patients with cystic fibrosis. S13. https://doi.org/10.1016/S1569-1993(17)30198-4
Segers, F. J. J. (2017). Growth of indoor fungi under changing water conditions. [Doctoral thesis 2 (Research NOT UU / Graduation UU), Universiteit Utrecht]. Utrecht University.
Stöckli, M., Lin, C.-W., Sieber, R., Plaza, D. F., Ohm, R. A., & Künzler, M. (2017). Coprinopsis cinerea intracellular lactonases hydrolyze quorum sensing molecules of Gram-negative bacteria. Fungal Genetics and Biology, 102, 49-62. https://doi.org/10.1016/j.fgb.2016.07.009
Benoit-Gelber, I., Gruntjes, T., Vinck, A., van Veluw, J., Wosten, H., Boeren, S., Vervoort, J. J. M., & de Vries, R. P. (2017). Mixed colonies of Aspergillus niger and Aspergillus oryzae cooperatively degrading wheat bran. Fungal Genetics and Biology, 102, 31-37. https://doi.org/10.1016/j.fgb.2017.02.006
Steinberg, G., Peñalva, M. A., Riquelme, M., Wosten, H., & Harris, S. D. (2017). Cell Biology of Hyphal Growth. Microbiology spectrum, 5(2), 1-34. https://doi.org/10.1128/microbiolspec.FUNK-0034-2016
Pérez-Ortega, J., Rodríguez, A., Ribes, E., Tommassen, J., & Arenas Busto, J. (2017). Interstrain cooperation in meningococcal biofilms: Role of autotransporters NalP and AutA. Frontiers in Microbiology, 8, Article 434. https://doi.org/10.3389/fmicb.2017.00434
Celis, A. M., Vos, A., Triana, S., Medina, C. A., Escobar Salazar, N., Restrepo, S., Wosten, H., & de Cock, H. (2017). Highly efficient transformation system for Malassezia furfur and Malassezia pachydermatis using Agrobacterium tumefaciens-mediated transformation. Journal of Microbiological Methods, 134, 1-6. https://doi.org/10.1016/j.mimet.2017.01.001
Bunt, G., Liakopoulos, A., Mevius, D. J., Geurts, Y., Fluit, A. C., Bonten, M. J. M., Mughini-Gras, L., & van Pelt, W. (2017). ESBL/AmpC-producing Enterobacteriaceae in households with children of preschool age: prevalence, risk factors and co-carriage. Journal of Antimicrobial Chemotherapy, 72(2), 589-595. https://doi.org/10.1093/jac/dkw443
Arenas Busto, J., & Tommassen, J. (2017). Meningococcal Biofilm Formation: Let's Stick Together. Trends in Microbiology, 25(2), 113-124. https://doi.org/10.1016/j.tim.2016.09.005
Tommassen - van Boxtel, R., Wattel, A. A., Arenas Busto, J., Goessens, W. H. F., & Tommassen, J. (2017). Acquisition of carbapenem resistance by plasmid-encoded-AmpC-expressing Escherichia coli. Antimicrobial Agents and Chemotherapy, 61(1), Article e01413-16. https://doi.org/10.1128/AAC.01413-16
Tegelaar, M., & Wösten, HAB. (2017). Functional distinction of hyphal compartments. Scientific Reports, 7, 1-6. Article 6039. https://doi.org/10.1038/s41598-017-06422-6
Wösten, HAB., Gurr, S. J., van Doorn, J. (Ed.), Luirink, J. (Ed.), van der Oost, J. (Ed.), Oudega, B. (Ed.), Robertson , L. (Ed.), Smit, H. (Ed.), Willemsen, P. (Ed.), & Biemans , C. (Ed.) (2017). Fungi: friends and foes. In J. van der Oost (Ed.), Mighty Microbes: The amazing world of microorganisms (pp. 103-105). Stichting Microcanon.
Segers, F. J. J., van Laarhoven, K. A., Wosten, H., & Dijksterhuis, J. (2017). Growth of indoor fungi on gypsum. Journal of Applied Microbiology, 123(2), 429–435. https://doi.org/10.1111/jam.13487
Wösten, HAB., Hoekstra, W., & de Graaf, A. (2017). Schimmels; van plaag tot bouwmeester. (Biowetenschappen en maatschappij; Vol. jg. 36, No. 4). Stichting Biowetenschapen en Maatschappij.
Pelkmans, J. F., Patil, M. B., Gehrmann, T., Reinders, M. J. T., Wösten, H. A. B., & Lugones, L. G. (2017). Transcription factors of Schizophyllum commune involved in mushroom formation and modulation of vegetative growth. Scientific Reports, 7(1), 1-11. Article 310. https://doi.org/10.1038/s41598-017-00483-3

2016

Bouma, T. J., van Belzen, J., Balke, T., van Dalen, J., Klaassen, P., Hartog, A. M., Callaghan, D. P., Hu, Z., Stive, M. J. F., Temmerman, S., & Herman, P. M. J. (2016). Short-term mudflat dynamics drive long-term cyclic salt marsh dynamics. Limnology and Oceanography, 61(6), 2261-2275. https://doi.org/10.1002/lno.10374
Escobar Salazar, N. (2016). Interaction of Aspergillus with alveolar Type II cells and phagocytes. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University.
Vasco Palacios, A. M. (2016). Ectomycorrhizal fungi in Amazonian tropical forests in Colombia. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University.
Gehrmann, T., Pelkmans, J. F., Lugones, L. G., Wösten, HAB., Abeel, T., & Reinders, M. J. (2016). Schizophyllum commune has an extensive and functional alternative splicing repertoire. Scientific Reports, 6, 1-11. Article 33640. https://doi.org/10.1038/srep33640
Segers, F. J. J., van Laarhoven, K., Huinink, H. P., Adan, O. C., Wösten, HAB., & Dijksterhuis, J. (2016). The Indoor Fungus Cladosporium halotolerans Survives Humidity Dynamics Markedly Better than Aspergillus niger and Penicillium rubens despite Less Growth at Lowered Steady-State Water Activity. Applied and Environmental Microbiology, 82(17), 5089-5098. https://doi.org/10.1128/AEM.00510-16
Riley, R., Haridas, S., Wolfe, K. H., Lopes, M. R., Hittinger, C. T., Göker, M., Salamov, A. A., Wisecaver, J. H., Long, T. M., Calvey, C. H., Aerts, A. L., Barry, K. W., Choi, C., Clum, A., Coughlan, A. Y., Deshpande, S., Douglass, A. P., Hanson, S. J., Klenk, H.-P., ... Jeffries, T. W. (2016). Comparative genomics of biotechnologically important yeasts. Proceedings of the National Academy of Sciences of the United States of America, 113(35), 9882-7. https://doi.org/10.1073/pnas.1603941113
Sánchez Fernández, E. M., Navo, C. D., Martinez Saez, N., Conçalves-Pereira, R., Somovilla Busto, V. J., Avenoza, A., Arenas Busto, J., Bernardes, G. J. L., Jiménez-Osés, G., Corzana, F., García Fernández, J. M., Mellet, C. O., & Peregrina, J. M. (2016). Tn Antigen Mimics Based on sp2-Iminosugars with Affinity for an anti-MUC1 Antibody. Organic Letters, 18(15). https://doi.org/10.1021/acs.orglett.6b01899
Pelkmans, J. F., Vos, A. M., Scholtmeijer, K., Hendrix, E., Baars, J. J., Gehrmann, T., Reinders, M. J., Lugones, L. G., & Wösten, HAB. (2016). The transcriptional regulator c2h2 accelerates mushroom formation in Agaricus bisporus. Applied Microbiology and Biotechnology, 100(16), 7151-7159. https://doi.org/10.1007/s00253-016-7574-9
Corrochano, L. M., Kuo, A., Marcet-Houben, M., Polaino, S., Salamov, A., Villalobos-Escobedo, J. M., Grimwood, J., Álvarez, M. I., Avalos, J., Bauer, D., Benito, E. P., Benoit, I., Burger, G., Camino, L. P., Cánovas, D., Cerdá-Olmedo, E., Cheng, J.-F., Domínguez, A., Eliáš, M., ... Grigoriev, I. V. (2016). Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication. Current Biology, 26(12), 1577-84. https://doi.org/10.1016/j.cub.2016.04.038
Zacchetti, B., Willemse, J., Recter, B., van Dissel, D., van Wezel, GP., Wösten, HAB., & Claessen, D. (2016). Aggregation of germlings is a major contributing factor towards mycelial heterogeneity of Streptomyces. Scientific Reports, 6, 1-11. Article 27045. https://doi.org/10.1038/srep27045
Nagy, L. G., Riley, R., Tritt, A., Adam, C., Daum, C., Floudas, D., Sun, H., Yadav, J. S., Pangilinan, J., Larsson, K.-H., Matsuura, K., Barry, K., Labutti, K., Kuo, R., Ohm, R. A., Bhattacharya, S. S., Shirouzu, T., Yoshinaga, Y., Martin, F. M., ... Hibbett, D. S. (2016). Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities. Molecular Biology and Evolution, 33(4), 959-70. https://doi.org/10.1093/molbev/msv337
Pelkmans, J. F. (2016). Environmental signaling and regulation of mushroom formation. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University.
Pelkmans, J. F., Lugones, L. G., & Wosten, H. A. B. (2016). Fruiting Body Formation in Basidiomycetes. In The Mycota: Growth, Differentiation and Sexuality (3rd ed., Vol. 1, pp. 387-405) https://doi.org/10.1007/978-3-319-25844-7_15
Peter, M., Kohler, A., Ohm, R. A., Kuo, A., Krützmann, J., Morin, E., Arend, M., Barry, K. W., Binder, M., Choi, C., Clum, A., Copeland, A., Grisel, N., Haridas, S., Kipfer, T., LaButti, K., Lindquist, E., Lipzen, A., Maire, R., ... Martin, F. M. (2016). Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum. Nature Communications [E], 7, Article 12662. https://doi.org/10.1038/ncomms12662
Jiang, Y., Duarte, A. V., van Den Brink, J., Wiebenga, A., Zou, G., Wang, C., de Vries, R. P., Zhou, Z., & Benoit, I. (2016). Enhancing saccharification of wheat straw by mixing enzymes from genetically-modified Trichoderma reesei and Aspergillus niger. Biotechnology Letters, 38(1), 65–70. https://doi.org/10.1007/s10529-015-1951-9
Sabotič, J., Ohm, R. A., & Künzler, M. (2016). Entomotoxic and nematotoxic lectins and protease inhibitors from fungal fruiting bodies. Applied Microbiology and Biotechnology, 100(1), 91-111. https://doi.org/10.1007/s00253-015-7075-2
Mosier, A. C., Miller, C. S., Frischkorn, K. R., Ohm, R. A., Li, Z., LaButti, K., Lapidus, A., Lipzen, A., Chen, C., Johnson, J., Lindquist, E. A., Pan, C., Hettich, R. L., Grigoriev, I. V., Singer, S. W., & Banfield, J. F. (2016). Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage. Frontiers in Microbiology, 7. https://doi.org/10.3389/fmicb.2016.00238
Escobar, N., Ordonez Alvarez, S., Wosten, H., Haas, P.-J. A., de Cock, H., & Haagsman, H. P. (2016). Hide, Keep Quiet, and Keep Low: Properties That Make Aspergillus fumigatus a Successful Lung Pathogen. Frontiers in Microbiology, 7, 1-13. Article 438. https://doi.org/10.3389/fmicb.2016.00438
van Leeuwen, M. R., Wyatt, T. T., van Doorn, T. M., Lugones, L. G., Wosten, H., & Dijksterhuis, J. (2016). Hydrophilins in the filamentous fungus Neosartorya fischeri (Aspergillus fischeri) have protective activity against several types of microbial water stress. Environmental Microbiology Reports, 8(1), 45-52. https://doi.org/10.1111/1758-2229.12349
Aaron-Morrison, A. P., Ackerman, S. A., Adams, N. G., Adler, R. F., Albanil, A., Alfaro, E. J., Allan, R., Alves, L. M., Amador, J. A., Andreassen, L. M., Arendt, A., Arévalo, J., Arndt, D. S., Arzhanova, N. M., Aschan, M. M., Azorin-Molina, C., Banzon, V., Bardin, M. U., Barichivich, J., ... Young, T. (2016). State of the climate in 2015. Bulletin of the American Meteorological Society, 97(8), S1-S275. https://doi.org/10.1175/2016BAMSStateoftheClimate.1
de Cock, J. J. P. A., van Doorn, J., van den Berg, L., Bitter, F. M., & Wösten, HAB. (2016). Veilig werken met micro-organismen, parasieten en cellen in laboratoria en andere werkruimtes. ( 4de editie. ed.) Koninklijke Nederlandse Vereniging voor Microbiologie.

2015

Pacholewicz, E., Liakopoulos, A., Swart, A., Gortemaker, B., Dierikx, C., Havelaar, A., & Schmitt, H. (2015). Reduction of extended-spectrum-β-lactamase- and AmpC-β-lactamase-producing Escherichia coli through processing in two broiler chicken slaughterhouses. International Journal of Food Microbiology, 215, 57-63. https://doi.org/10.1016/j.ijfoodmicro.2015.08.010