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Dr. L.B. (Basten) Snoek

Assistant Professor 
Science
Biology
Biodynamics and Biocomplexity
Bioinformatics
Bioinformatics
Technical Support Assistant for Teaching and Research - O profile 
Science
Biology
Biodynamics and Biocomplexity
Bioinformatics
Bioinformatics
Hugo R. Kruytgebouw
Padualaan 8
Kamer N.605
3584 CH Utrecht

Dr. L.B. (Basten) Snoek

Assistant Professor
Bioinformatics
Technical Support Assistant for Teaching and Research - O profile
Bioinformatics
+31 30 253 2550
l.b.snoek@uu.nl
Profile CV Publications Teaching Contact
Profile CV Publications Teaching Contact

Publications

2023

Scholarly publications

García-González, I., Martínez-García, L. B., Barel, J. M., Martens, H., Snoek, L. B., Hontoria, C., & De Deyn, G. B. (2023). Cover crop identity determines root fungal community and arbuscular mycorrhiza colonization in following main crops. European Journal of Soil Science, 74(6), Article e13427. https://doi.org/10.1111/ejss.13427
Ijadpanahsaravi, M., Snoek, L. B., Teertstra, W. R., & Wösten, H. A. B. (2024). The impact of inter- and intra-species spore density on germination of the food spoilage fungus Aspergillus niger. International Journal of Food Microbiology, 410, 1-10. Article 110495. Advance online publication. https://doi.org/10.1016/j.ijfoodmicro.2023.110495
Huber, M., Julkowska, M. M. M., Snoek, L. B., van Veen, H., Toulotte, J., Kumar, V., Kajala, K., Sasidharan, R., & Pierik, R. (2023). Towards increased shading capacity: A combined phenotypic and genetic analysis of rice shoot architecture. Plants People Planet. Advance online publication. https://doi.org/10.1002/ppp3.10419
Sterken, M. G., Nijveen, H., van Zanten, M., Jiménez-Gómez, J. M., Geshnizjani, N., Willems, L. A. J., Rienstra, J., Hilhorst, H. W. M., Ligterink, W., & Snoek, B. L. (2023). Plasticity of maternal environment-dependent expression-QTLs of tomato seeds. Theoretical And Applied Genetics, 136(2), Article 5. https://doi.org/10.1007/s00122-023-04322-0
van Wijk, M. H., Riksen, J. A. G., Elvin, M., Poulin, G. B., Maulana, M. I., Kammenga, J. E., Snoek, B. L., & Sterken, M. G. (2023). Cryptic genetic variation of expression quantitative trait locus architecture revealed by genetic perturbation in Caenorhabditis elegans. G3: Genes, Genomes, Genetics, 13(5), Article jkad050. https://doi.org/10.1093/g3journal/jkad050
Küpers, J. J., Snoek, B. L., Oskam, L., Pantazopoulou, C. K., Matton, S. E. A., Reinen, E., Liao, C. Y., Eggermont, E. D. C., Weekamp, H., Biddanda-Devaiah, M., Kohlen, W., Weijers, D., & Pierik, R. (2023). Local light signaling at the leaf tip drives remote differential petiole growth through auxin-gibberellin dynamics. Current Biology, 33(1), 75-85. https://doi.org/10.1016/j.cub.2022.11.045

2022

Scholarly publications

Van Schijndel, L., Snoek, B. L., & Ten Tusscher, K. (2022). Embodiment in distributed information processing: Solid plants versus liquid ant colonies. Quantitative Plant Biology, 3, 1-7. Article e27. https://doi.org/10.1017/qpb.2022.22
Vismans, G., van Bentum, S., Spooren, J., Song, Y., Goossens, P., Valls, J., Snoek, B. L., Thiombiano, B., Schilder, M., Dong, L., Bouwmeester, H. J., Pétriacq, P., Pieterse, C. M. J., Bakker, P. A. H. M., & Berendsen, R. L. (2022). Coumarin biosynthesis genes are required after foliar pathogen infection for the creation of a microbial soil-borne legacy that primes plants for SA-dependent defenses. Scientific Reports, 12(1), Article 22473. https://doi.org/10.1038/s41598-022-26551-x
De Long, J. R., Fry, E., Bloemhard, C., Blok, C., Duhamel, M., Messelink, G., Persijn, A., Pham, K., Snoek, L. B., & van Leeuwen, P. (2022). Contrasting Management Techniques and Soil Types Affect Network Connections between Soil Properties and the Tulip Microbiome. SSRN. https://doi.org/10.2139/ssrn.4057269
van Schijndel, L., Snoek, B. L., & ten Tusscher, K. (2022). Author comment: Embodiment in distributed information processing: “Solid” plants versus “liquid” ant colonies — R0/PR1. Quantitative Plant Biology, Article 27. https://doi.org/10.1017/qpb.2022.22.pr1
Wilschut, R. A., De Long, J. R., Geisen, S., Hannula, S. E., Quist, C. W., Snoek, B., Steinauer, K., Wubs, E. R. J., Yang, Q., & Thakur, M. P. (2022). Combined effects of warming and drought on plant biomass depend on plant woodiness and community type: a meta-analysis. Proceedings. Biological sciences, 289(1984), 1-10. Article 20221178. https://doi.org/10.1098/rspb.2022.1178
Hauptfeld, E., Pelkmans, J., Huisman, T. T., Anocic, A., Snoek, B. L., von Meijenfeldt, F. A. B., Gerritse, J., van Leeuwen, J., Leurink, G., van Lit, A., van Uffelen, R., Koster, M. C., & Dutilh, B. E. (2022). A metagenomic portrait of the microbial community responsible for two decades of bioremediation of poly-contaminated groundwater. Water Research, 221, 1-10. Article 118767. https://doi.org/10.1016/j.watres.2022.118767
Oyserman, B. O., Flores, S. S., Griffioen, T., Pan, X., van der Wijk, E., Pronk, L., Lokhorst, W., Nurfikari, A., Paulson, J. N., Movassagh, M., Stopnisek, N., Kupczok, A., Cordovez, V., Carrión, V. J., Ligterink, W., Snoek, B. L., Medema, M. H., & Raaijmakers, J. M. (2022). Disentangling the genetic basis of rhizosphere microbiome assembly in tomato. Nature Communications, 13(1), 1-16. Article 3228. https://doi.org/10.1038/s41467-022-30849-9
Maulana, M. I., Riksen, J. A. G., Snoek, B. L., Kammenga, J. E., & Sterken, M. G. (2022). The genetic architecture underlying body-size traits plasticity over different temperatures and developmental stages in Caenorhabditis elegans. Heredity, 128(5), 313-324. https://doi.org/10.1038/s41437-022-00528-y
van Sluijs, L., Bosman, K. J., Pankok, F., Blokhina, T., Wilten, J. I. H. A., Te Molder, D. M., Riksen, J. A. G., Snoek, B. L., Pijlman, G. P., Kammenga, J. E., & Sterken, M. G. (2022). Balancing Selection of the Intracellular Pathogen Response in Natural Caenorhabditis elegans Populations. Frontiers in cellular and infection microbiology, 11, 1-14. Article 758331. https://doi.org/10.3389/fcimb.2021.758331
Pavlova, P., van Zanten, M., Snoek, B. L., de Jong, H., & Fransz, P. (2022). Correction to: 2D morphometric analysis of Arabidopsis thaliana nuclei reveals characteristic profiles of different cell types and accessions (Chromosome Research, (2022), 30, 1, (5-24), 10.1007/s10577-021-09673-2). Chromosome Research, 30(1), 25–27. https://doi.org/10.1007/s10577-021-09677-y
Pavlova, P., van Zanten, M., Snoek, B. L., de Jong, H., & Fransz, P. (2022). 2D morphometric analysis of Arabidopsis thaliana nuclei reveals characteristic profiles of different cell types and accessions. Chromosome Research, 30(1), 5–24. https://doi.org/10.1007/s10577-021-09673-2

2021

Scholarly publications

Huber, M., Julkowska, M. M., Snoek, B. L., Veen, H. V., Toulotte, J., Kumar, V., Kajala, K., Sasidharan, R., & Pierik, R. (2021). Towards increased shading potential: a combined phenotypic and genetic analysis of rice shoot architecture. bioRxiv. https://doi.org/10.1101/2021.05.25.445664
Sterken, M. G., Nijveen, H., van Zanten, M., Jiménez-Gómez, J. M., Geshnizjani, N., Willems, L. A. J., Rienstra, J., Hilhorst, H. W. M., Ligterink, W., & Snoek, B. L. (2021). Plasticity of maternal environment dependent expression-QTLs of tomato seeds. (pp. 1-44). bioRxiv. https://doi.org/10.1101/2021.03.29.437558
https://dspace.library.uu.nl/bitstream/handle/1874/415230/2021.03.29.437558v2.full.pdf?sequence=1
Courbier, S., Snoek, B. L., Kajala, K., Li, L., van Wees, S. C. M., & Pierik, R. (2021). Mechanisms of far-red light-mediated dampening of defense against Botrytis cinerea in tomato leaves. Plant Physiology, 187(3), 1250-1266. https://doi.org/10.1093/plphys/kiab354
Snoek, B. L., Sterken, M. G., Nijveen, H., Volkers, R. J. M., Riksen, J., Rosenstiel, P. C., Schulenburg, H., & Kammenga, J. E. (2021). The genetics of gene expression in a Caenorhabditis elegans multiparental recombinant inbred line population. G3: Genes, Genomes, Genetics, 11(10), 1-10. Article jkab258. https://doi.org/10.1093/g3journal/jkab258
Ochoa-Hueso, R., Delgado-Baquerizo, M., Risch, A. C., Schrama, M., Morriën, E., Barmentlo, S. H., Geisen, S., Hannula, S. E., Resch, M. C., Snoek, B. L., & van der Putten, W. H. (2021). Ecosystem coupling: A unifying framework to understand the functioning and recovery of ecosystems. One Earth, 4(7), 951-966. https://doi.org/10.1016/j.oneear.2021.06.011
https://dspace.library.uu.nl/bitstream/handle/1874/428208/PIIS2590332221003535.pdf?sequence=1
de Groot, G. A., Geisen, S., Wubs, E. R. J., Meulenbroek, L., Laros, I., Snoek, L. B., Lammertsma, D. R., Hansen, L. H., & Slim, P. A. (2021). The aerobiome uncovered: Multi-marker metabarcoding reveals potential drivers of turn-over in the full microbial community in the air. Environment international, 154, 1-8. Article 106551. https://doi.org/10.1016/j.envint.2021.106551
Sterken, M. G., van Sluijs, L., Wang, Y. A., Ritmahan, W., Gultom, M. L., Riksen, J. A. G., Volkers, R. J. M., Snoek, L. B., Pijlman, G. P., & Kammenga, J. E. (2021). Punctuated loci on chromosome IV determine natural variation in Orsay virus susceptibility of Caenorhabditis elegans strains Bristol N2 and Hawaiian CB4856. Journal of Virology, 95(12), 1-14. Article e02430-20. https://doi.org/10.1128/jvi.02430-20
Yu, K., Stringlis, I. A., van Bentum, S., de Jonge, R., Snoek, B. L., Pieterse, C. M. J., Bakker, P. A. H. M., & Berendsen, R. L. (2021). Transcriptome Signatures in Pseudomonas simiae WCS417 Shed Light on Role of Root-Secreted Coumarins in Arabidopsis-Mutualist Communication. Microorganisms, 9(3), Article 575. https://doi.org/10.3390/microorganisms9030575
Woude, L. V. D., Piotrowski, M., Klaasse, G., Paulus, J. K., Krahn, D., Ninck, S., Kaschani, F., Kaiser, M., Novák, O., Ljung, K., Bulder, S., van Verk, M., Snoek, B. L., Fiers, M., Martin, N. I., van der Hoorn, R. A. L., Robert, S., Smeekens, S., & van Zanten, M. (2021). The chemical compound 'Heatin' stimulates hypocotyl elongation and interferes with the Arabidopsis NIT1-subfamily of nitrilases. Plant Journal, 106(6), 1523-1540. https://doi.org/10.1111/tpj.15250
Geisen, S., ten Hooven, F. C., Kostenko, O., Snoek, L. B., & van Der Putten, W. H. (2021). Fungal root endophytes influence plants in a species-specific manner that depends on plant's growth stage. Journal of Ecology, 109(4), 1618-1632. https://doi.org/10.1111/1365-2745.13584
Haagsman, M., Snoek, B., Peeters, A., Scager, K., Prins, F., & van Zanten, M. (2021). Examiners' use of rubric criteria for grading bachelor theses. Assessment and Evaluation in Higher Education, 46(8), 1269-1284. https://doi.org/10.1080/02602938.2020.1864287
Meisner, A., Snoek, B. L., Nesme, J., Dent, E., Jacquiod, S., Classen, A. T., & Priemé, A. (2021). Soil microbial legacies differ following drying-rewetting and freezing-thawing cycles. The ISME Journal, 15(4), 1207-1221. https://doi.org/10.1038/s41396-020-00844-3

2020

Scholarly publications

Sterken, M. G., Bevers, R. P. J., Volkers, R. J. M., Riksen, J. A. G., Kammenga, J. E., & Snoek, B. L. (2020). Dissecting the eQTL Micro-Architecture in Caenorhabditis elegans. Frontiers in Genetics, 11, 1-15. Article 501376. https://doi.org/10.3389/fgene.2020.501376
Koorem, K., Snoek, B. L., Bloem, J., Geisen, S., Kostenko, O., Manrubia, M., Ramirez, K. S., Weser, C., Wilschut, R. A., & van der Putten, W. H. (2020). Community-level interactions between plants and soil biota during range expansion. Journal of Ecology, 108(5), 1860-1873. https://doi.org/10.1111/1365-2745.13409
Lindhout, F. W., Kooistra, R., Portegies, S., Herstel, L. J., Stucchi, R., Snoek, B. L., Altelaar, M., MacGillavry, H. D., Wierenga, C. J., & Hoogenraad, C. C. (2020). Quantitative mapping of transcriptome and proteome dynamics during polarization of human iPSC-derived neurons. eLife, 9. https://doi.org/10.7554/eLife.58124
Hartanto, M., Joosen, R. V. L., Snoek, B. L., Willems, L. A. J., Sterken, M. G., de Ridder, D., Hilhorst, H. W. M., Ligterink, W., & Nijveen, H. (2020). Network Analysis Prioritizes DEWAX and ICE1 as the Candidate Genes for Major eQTL Hotspots in Seed Germination of Arabidopsis thaliana. G3: Genes, Genomes, Genetics, 10(10), 4215–4226. https://doi.org/10.1534/g3.120.401477
Geshnizjani, N., Snoek, B. L., Willems, L. A. J., Rienstra, J. A., Nijveen, H., Hilhorst, H. W. M., & Ligterink, W. (2020). Detection of QTLs for genotype × environment interactions in tomato seeds and seedlings. Plant, Cell and Environment, 43(8), 1973-1988. https://doi.org/10.1111/pce.13788
Pascoal, S., Risse, J. E., Zhang, X., Blaxter, M., Cezard, T., Challis, R. J., Gharbi, K., Hunt, J., Kumar, S., Langan, E., Liu, X., Rayner, J. G., Ritchie, M. G., Snoek, B. L., Trivedi, U., & Bailey, N. W. (2020). Field cricket genome reveals the footprint of recent, abrupt adaptation in the wild. Evolution Letters, 4(1), 19-33. https://doi.org/10.1002/evl3.148
Snoek, B. L., Sterken, M. G., Hartanto, M., van Zuilichem, A-J., Kammenga, J. E., de Ridder, D., & Nijveen, H. (2020). WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans. Database : the journal of biological databases and curation, 2020, Article baz149. https://doi.org/10.1093/database/baz149

2019

Scholarly publications

Jovic, K., Grilli, J., Sterken, M. G., Snoek, B. L., Riksen, J. A. G., Allesina, S., & Kammenga, J. E. (2019). Transcriptome resilience predicts thermotolerance in Caenorhabditis elegans. BMC Biology, 17, Article 102. https://doi.org/10.1186/s12915-019-0725-6
Van Der Woude, L. C., Perrella, G., Snoek, B. L., Van Hoogdalem, M., Novák, O., Van Verk, M. C., Van Kooten, H. N., Zorn, L. E., Tonckens, R., Dongus, J. A., Praat, M., Stouten, E. A., Proveniers, M. C. G., Vellutini, E., Patitaki, E., Shapulatov, U., Kohlen, W., Balasubramanian, S., Ljung, K., ... Van Zanten, M. (2019). HISTONE DEACETYLASE 9 stimulates auxin-dependent thermomorphogenesis in Arabidopsis thaliana by mediating H2A.Z depletion. Proceedings of the National Academy of Sciences of the United States of America, 116(50), 25343-25354. Article 201911694. https://doi.org/10.1073/pnas.1911694116
https://dspace.library.uu.nl/bitstream/handle/1874/387546/1911694116.full.pdf?sequence=1
Veen, G. F., Snoek, B. L., Bakx‐Schotman, T., Wardle, D. A., & Putten, W. H. (2019). Relationships between fungal community composition in decomposing leaf litter and home‐field advantage effects. Functional Ecology, 33(8), 1524-1535. https://doi.org/10.1111/1365-2435.13351
Wilschut, R. A., Geisen, S., Martens, H., Kostenko, O., de Hollander, M., Ten Hooven, F., Weser, C., Snoek, L. B., Bloem, J., Caković, D., Čelik, T., Koorem, K., Krigas, N., Manrubia, M., Ramirez, K. S., Tsiafouli, M. A., Vreš, B., & van der Putten, W. H. (2019). Latitudinal variation in soil nematode communities under climate warming-related range-expanding and native plants. Global Change Biology, 25(8), 2714-2726. https://doi.org/10.1111/gcb.14657
Ramirez, K. S., Snoek, L. B., Koorem, K., Geisen, S., Bloem, L. J., Ten Hooven, F., Kostenko, O., Krigas, N., Manrubia, M., Caković, D., van Raaij, D., Tsiafouli, M. A., Vreš, B., Čelik, T., Weser, C., Wilschut, R. A., & van der Putten, W. H. (2019). Range-expansion effects on the belowground plant microbiome. Nature Ecology and Evolution, 3(4), 604-611. https://doi.org/10.1038/s41559-019-0828-z
https://dspace.library.uu.nl/bitstream/handle/1874/379889/Range.pdf?sequence=1
Wang, Y. A., Snoek, B. L., Sterken, M. G., Riksen, J. A. G., Stastna, J. J., Kammenga, J. E., & Harvey, S. C. (2019). Genetic background modifies phenotypic and transcriptional responses in a C. elegans model of -synuclein toxicity. BMC Genomics, 20(232), 1-12. https://doi.org/10.1186/s12864-019-5597-1
Snoek, B. L., Volkers, R. J. M., Nijveen, H., Petersen, C., Dirksen, P., Sterken, M. G., Nakad, R., Riksen, J. A. G., Rosenstiel, P., Stastna, J. J., Braeckman, B. P., Harvey, S. C., Schulenburg, H., & Kammenga, J. E. (2019). A multi-parent recombinant inbred line population of C. elegans allows identification of novel QTLs for complex life history traits. BMC Biology, 17(24), 24. https://doi.org/10.1186/s12915-019-0642-8
Geshnizjani, N., Khorami, S. S., Willems, L. A. J., Snoek, B. L., Hilhorst, H. W. M., & Ligterink, W. (2019). The interaction between genotype and maternal nutritional environments affects tomato seed and seedling quality. Journal of Experimental Botany, 70(10), 2905–2918. https://doi.org/10.1093/jxb/erz101
https://dspace.library.uu.nl/bitstream/handle/1874/391759/erz101.pdf?sequence=1
Manrubia, M., Snoek, L. B., Weser, C., Veen, G. F., & van der Putten, W. H. (2019). Belowground Consequences of Intracontinental Range-Expanding Plants and Related Natives in Novel Environments. Frontiers in Microbiology, 10. https://doi.org/10.3389/fmicb.2019.00505
Kurm, V., van der Putten, W. H., Weidner, S., Geisen, S., Snoek, B. L., Bakx, T., & Hol, W. H. G. (2019). Competition and predation as possible causes of bacterial rarity. Environmental Microbiology, 21(4), 1356-1368. https://doi.org/10.1111/1462-2920.14569

2018

Scholarly publications

Ribeiro, P. R., Willems, L. A. J., Silva, A. T., Fernandez, L. G., de Castro, R. D., Bucher, J., Snoek, B. L., Hilhorst, H. W. M., & Ligterink, W. (2018). Transcriptome profiling of Ricinus communis L. provides new insights underlying the mechanisms towards thermotolerance during seed imbibition and germination. Industrial Crops and Products, 126, 380-393. https://doi.org/10.1016/j.indcrop.2018.10.024
https://dspace.library.uu.nl/bitstream/handle/1874/373656/1_s2.0_S0926669018308860_main.pdf?sequence=1
van Herwijnen, M. J. C., Driedonks, T. A. P., Snoek, B. L., Kroon, A. M. T., Kleinjan, M., Jorritsma, R., Pieterse, C. M. J., Hoen, E. N. M. N., & Wauben, M. H. M. (2018). Abundantly present miRNAs in milk-derived extracellular vesicles are conserved between mammals. Frontiers in Nutrition, 5, Article 81. https://doi.org/10.3389/fnut.2018.00081
Gao, A. W., Sterken, M. G., de Bos, J. U., van Creij, J., Kamble, R., Snoek, B. L., Kammenga, J. E., & Houtkooper, R. H. (2018). Natural genetic variation in C. Elegans identified genomic loci controlling metabolite levels. Genome Research, 28(9), 1296-1308. https://doi.org/10.1101/gr.232322.117
Ramirez, K. S., Geisen, S., Morriën, E., Snoek, B. L., & van der Putten, W. H. (2018). Network Analyses Can Advance Above-Belowground Ecology. Trends in Plant Science, 23(9), 759-768. https://doi.org/10.1016/j.tplants.2018.06.009
https://dspace.library.uu.nl/bitstream/handle/1874/369055/1_s2.0_S1360138518301390_main.pdf?sequence=1
Dröge-Laser, W., Snoek, B. L., Snel, B., & Weiste, C. (2018). The Arabidopsis bZIP transcription factor family: an update. Current Opinion in Plant Biology, 45(Part A), 36-49. https://doi.org/10.1016/j.pbi.2018.05.001
Koorem, K., Kostenko, O., Snoek, L. B., Weser, C., Ramirez, K. S., Wilschut, R. A., & Van Der Putten, W. H. (Accepted/In press). Relatedness with plant species in native community influences ecological consequences of range expansions. Oikos. https://doi.org/10.1111/oik.04817
Meisner, A., Jacquiod, S., Snoek, B. L., ten Hooven, F. C., & Van Der Putten, W. H. (2018). Drought legacy effects on the composition of soil fungal and prokaryote communities. Frontiers in Microbiology, 9, Article 294. https://doi.org/10.3389/fmicb.2018.00294
Geisen, S., Snoek, L. B., ten Hooven, F. C., Duyts, H., Kostenko, O., Bloem, J., Martens, H., Quist, C. W., Helder, J. A., & Van Der Putten, W. H. (2018). Integrating quantitative morphological and qualitative molecular methods to analyse soil nematode community responses to plant range expansion. Methods in Ecology and Evolution, 9(6), 1366-1378. https://doi.org/10.1111/2041-210X.12999

2017

Scholarly publications

Serin, E. A. R., Snoek, B., Nijveen, H., Willems, L. A. J., Jimenez-Gomez, J. M., Hilhorst, H. W. M., & Ligterink, W. (2017). Construction of a High-Density Genetic Map from RNA-Seq Data for an Arabidopsis Bay-0 x Shahdara RIL Population. Frontiers in Genetics, 8, Article 201. https://doi.org/10.3389/fgene.2017.00201
Jovic, K., Sterken, M. G., Grilli, J., Bevers, R. P. J., Rodriguez, M., Riksen, J. A. G., Allesina, S., Kammenga, J. E., & Snoek, L. B. (2017). Temporal dynamics of gene expression in heat-stressed Caenorhabditis elegans. PLoS One, 12(12), 0189445. Article 0189445. https://doi.org/10.1371/journal.pone.0189445
Veen, G. F., De Long, J. R., Kardol, P., Sundqvist, M. K., Snoek, L. B., & Wardle, D. A. (2017). Coordinated responses of soil communities to elevation in three subarctic vegetation types. Oikos, 126(11), 1586-1599. https://doi.org/10.1111/oik.04158
Harkes, P., Verhoeven, A., Sterken, M. G., Snoek, L. B., van den Elsen, S. J. J., Mooijman, P. J. W., Quist, C. W., Vervoort, M. T. W., & Helder, J. (2017). The differential impact of a native and a non-native ragwort species (Senecioneae) on the first and second trophic level of the rhizosphere food web. Oikos, 126(12), 1790-1803. https://doi.org/10.1111/oik.04530
Snoek, B. L., Pavlova, P., Tessadori, F., Peeters, A. J. M., Bourbousse, C., Barneche, F., de Jong, H., Fransz, P. F., & van Zanten, M. (2017). Genetic Dissection of Morphometric Traits Reveals That Phytochrome B Affects Nucleus Size and Heterochromatin Organization in Arabidopsis thaliana. G3: Genes, Genomes, Genetics, 7(8), 2519-2531. https://doi.org/10.1534/g3.117.043539
Snoek, B. L., Sterken, M. G., Bevers, R. P. J., Volkers, R. J. M., Van't Hof, A., Brenchley, R., Riksen, J. A. G., Cossins, A. R., & Kammenga, J. E. (2017). Contribution of trans regulatory eQTL to cryptic genetic variation in C. elegans. BMC Genomics, 18(1), 500. https://doi.org/10.1186/s12864-017-3899-8
Sterken, M. G., van Bemmelen van der Plaat, L., Riksen, J. A. G., Rodriguez, M., Schmid, T., Hajnal, A., Kammenga, J. E., & Snoek, B. L. (2017). Ras/MAPK Modifier Loci Revealed by eQTL in Caenorhabditis elegans. G3: Genes, Genomes, Genetics, 7(9), 3185-3193. https://doi.org/10.1534/g3.117.1120
Nijveen, H., Ligterink, W., Keurentjes, J. J. B., Loudet, O., Long, J., Sterken, M. G., Prins, P., Hilhorst, H. W., de Ridder, D., Kammenga, J. E., & Snoek, B. L. (2017). AraQTL - workbench and archive for systems genetics in Arabidopsis thaliana. Plant Journal, 89(6), 1225-1235. https://doi.org/10.1111/tpj.13457
Zych, K., Snoek, B. L., Elvin, M., Rodriguez, M., Van der Velde, K. J., Arends, D., Westra, H-J., Swertz, M. A., Poulin, G., Kammenga, J. E., Breitling, R., Jansen, R. C., & Li, Y. (2017). reGenotyper: Detecting mislabeled samples in genetic data. PLoS One, 12(2), Article e0171324. https://doi.org/10.1371/journal.pone.0171324
Morriën, E., Hannula, S. E., Snoek, L. B., Helmsing, N. R., Zweers, H., de Hollander, M., Soto, R. L., Bouffaud, M-L., Buée, M., Dimmers, W., Duyts, H., Geisen, S., Girlanda, M., Griffiths, R. I., Jørgensen, H-B., Jensen, J., Plassart, P., Redecker, D., Schmelz, R. M., ... van der Putten, W. H. (2017). Soil networks become more connected and take up more carbon as nature restoration progresses. Nature Communications, 8, 1-10. Article 14349. https://doi.org/10.1038/ncomms14349

2016

Scholarly publications

Crowther, T. W., Todd-Brown, K. E. O., Rowe, C. W., Wieder, W. R., Carey, J. C., Machmuller, M. B., Snoek, B. L., Fang, S., Zhou, G., Allison, S. D., Blair, J. M., Bridgham, S. D., Burton, A. J., Carrillo, Y., Reich, P. B., Clark, J. S., Classen, A. T., Dijkstra, F. A., Elberling, B., ... Bradford, M. A. (2016). Quantifying global soil carbon losses in response to warming. Nature, 540, 104-108. https://doi.org/10.1038/nature20150
Wilschut, R. A., Oplaat, C., Snoek, L. B., Kirschner, J., & Verhoeven, K. J. F. (2016). Natural epigenetic variation contributes to heritable flowering divergence in a widespread asexual dandelion lineage. Molecular Ecology, 25(8), 1759-68. https://doi.org/10.1111/mec.13502
Kamkina, P., Snoek, L. B., Grossmann, J., Volkers, R. J. M., Sterken, M. G., Daube, M., Roschitzki, B., Fortes, C., Schlapbach, R., Roth, A., von Mering, C., Hengartner, M. O., Schrimpf, S. P., & Kammenga, J. E. (2016). Natural Genetic Variation Differentially Affects the Proteome and Transcriptome in Caenorhabditis elegans. Molecular and Cellular Proteomics, 15(5), 1670-80. https://doi.org/10.1074/mcp.M115.052548
Singh, K. D., Roschitzki, B., Snoek, L. B., Grossmann, J., Zheng, X., Elvin, M., Kamkina, P., Schrimpf, S. P., Poulin, G. B., Kammenga, J. E., & Hengartner, M. O. (2016). Natural Genetic Variation Influences Protein Abundances in C. elegans Developmental Signalling Pathways. PLoS One, 11(3), e0149418. https://doi.org/10.1371/journal.pone.0149418
Nakad, R., Snoek, L. B., Yang, W., Ellendt, S., Schneider, F., Mohr, T. G., Rösingh, L., Masche, A. C., Rosenstiel, P. C., Dierking, K., Kammenga, J. E., & Schulenburg, H. (2016). Contrasting invertebrate immune defense behaviors caused by a single gene, the Caenorhabditis elegans neuropeptide receptor gene npr-1. BMC Genomics, 17, Article 280. https://doi.org/10.1186/s12864-016-2603-8

2015

Scholarly publications

Sterken, M. G., Snoek, L. B., Kammenga, J. E., & Andersen, E. C. (2015). The laboratory domestication of Caenorhabditis elegans. Trends in Genetics, 31(5), 224-31. https://doi.org/10.1016/j.tig.2015.02.009
Schmid, T., Snoek, L. B., Fröhli, E., van der Bent, M. L., Kammenga, J., & Hajnal, A. (2015). Systemic Regulation of RAS/MAPK Signaling by the Serotonin Metabolite 5-HIAA. PLoS Genetics, 11(5), e1005236. https://doi.org/10.1371/journal.pgen.1005236
Valba, O. V., Nechaev, S. K., Sterken, M. G., Snoek, L. B., Kammenga, J. E., & Vasieva, O. O. (2015). On predicting regulatory genes by analysis of functional networks in C. elegans. BioData Mining, 8, 33. https://doi.org/10.1186/s13040-015-0066-0
Volkers, R. J. M., Snoek, L. B., Ruijssenaars, H. J., & de Winde, J. H. (2015). Dynamic Response of Pseudomonas putida S12 to Sudden Addition of Toluene and the Potential Role of the Solvent Tolerance Gene trgI. PLoS One, 10(7), e0132416. https://doi.org/10.1371/journal.pone.0132416
Thompson, O. A., Snoek, L. B., Nijveen, H., Sterken, M. G., Volkers, R. J. M., Brenchley, R., Van't Hof, A., Bevers, R. P. J., Cossins, A. R., Yanai, I., Hajnal, A., Schmid, T., Perkins, J. D., Spencer, D., Kruglyak, L., Andersen, E. C., Moerman, D. G., Hillier, L. W., Kammenga, J. E., & Waterston, R. H. (2015). Remarkably Divergent Regions Punctuate the Genome Assembly of the Caenorhabditis elegans Hawaiian Strain CB4856. Genetics, 200(3), 975-89. https://doi.org/10.1534/genetics.115.175950
Preite, V., Snoek, B., Oplaat, C., Biere, A., van der Putten, W. H., & Verhoeven, K. J. F. (2015). The epigenetic footprint of poleward range-expanding plants in apomictic dandelions. Molecular Ecology, 24(17), 4406-18. https://doi.org/10.1111/mec.13329
Stastna, J. J., Snoek, L. B., Kammenga, J. E., & Harvey, S. C. (2015). Genotype-dependent lifespan effects in peptone deprived Caenorhabditis elegans. Scientific Reports, 5, 16259. https://doi.org/10.1038/srep16259

2014

Scholarly publications

Maxeiner, S., Schmid, T., Snoek, L. B., Rodriguez, M., Largey, F., van der Bent, L., Kammenga, J. E., & Hajnal, A. F. (2014). Identifying modifiers of Wnt and EGFR/RAS/MAPK signaling through quantitative C. elegans genetics. FEBS Journal, 281, 474-474.
Snoek, L. B., Orbidans, H. E., Stastna, J. J., Aartse, A., Rodriguez, M., Riksen, J. A. G., Kammenga, J. E., & Harvey, S. C. (2014). Widespread genomic incompatibilities in Caenorhabditis elegans. G3: Genes, Genomes, Genetics, 4(10), 1813-1823. https://doi.org/10.1534/g3.114.013151
Hoogstrate, S. W., Volkers, R. J., Sterken, M. G., Kammenga, J. E., & Snoek, L. B. (2014). Nematode endogenous small RNA pathways. Worm, 3, e28234. https://doi.org/10.4161/worm.28234
He, H., de Souza Vidigal, D., Snoek, L. B., Schnabel, S., Nijveen, H., Hilhorst, H., & Bentsink, L. (2014). Interaction between parental environment and genotype affects plant and seed performance in Arabidopsis. Journal of Experimental Botany, 65(22), 6603-15. https://doi.org/10.1093/jxb/eru378
Snoek, L. B., Joeri van der Velde, K., Li, Y., Jansen, R. C., Swertz, M. A., & Kammenga, J. E. (2014). Worm variation made accessible: Take your shopping cart to store, link, and investigate! Worm, 3(1), e28357. https://doi.org/10.4161/worm.28357
van der Bent, M. L., Sterken, M. G., Volkers, R. J. M., Riksen, J. A. G., Schmid, T., Hajnal, A., Kammenga, J. E., & Snoek, L. B. (2014). Loss-of-function of β-catenin bar-1 slows development and activates the Wnt pathway in Caenorhabditis elegans. Scientific Reports, 4, 4926. https://doi.org/10.1038/srep04926
Sterken, M. G., Snoek, L. B., Bosman, K. J., Daamen, J., Riksen, J. A. G., Bakker, J., Pijlman, G. P., & Kammenga, J. E. (2014). A heritable antiviral RNAi response limits Orsay virus infection in Caenorhabditis elegans N2. PLoS One, 9(2), e89760. https://doi.org/10.1371/journal.pone.0089760
Snoek, L. B., Sterken, M. G., Volkers, R. J. M., Klatter, M., Bosman, K. J., Bevers, R. P. J., Riksen, J. A. G., Smant, G., Cossins, A. R., & Kammenga, J. E. (2014). A rapid and massive gene expression shift marking adolescent transition in C. elegans. Scientific Reports, 4, 3912. https://doi.org/10.1038/srep03912
van der Velde, K. J., de Haan, M., Zych, K., Arends, D., Snoek, L. B., Kammenga, J. E., Jansen, R. C., Swertz, M. A., & Li, Y. (2014). WormQTLHD--a web database for linking human disease to natural variation data in C. elegans. Nucleic Acids Research, 42(Database issue), D794-801. https://doi.org/10.1093/nar/gkt1044

2013

Scholarly publications

Fisher, K., Gee, F., Wang, S., Xue, F., Knapp, S., Philpott, M., Wells, C., Rodriguez, M., Snoek, L. B., Kammenga, J., & Poulin, G. B. (2013). Maintenance of muscle myosin levels in adult C. elegans requires both the double bromodomain protein BET-1 and sumoylation. Biology Open, 2(12), 1354-63. https://doi.org/10.1242/bio.20136007
Volkers, R. J. M., Snoek, L. B., Hubar, C. J. V. H., Coopman, R., Chen, W., Yang, W., Sterken, M. G., Schulenburg, H., Braeckman, B. P., & Kammenga, J. E. (2013). Gene-environment and protein-degradation signatures characterize genomic and phenotypic diversity in wild Caenorhabditis elegans populations. BMC Biology, 11, 93. https://doi.org/10.1186/1741-7007-11-93
Green, J. W. M., Snoek, B., Kammenga, J. E., & Harvey, S. C. (2013). Genetic mapping of variation in dauer larvae development in growing populations of Caenorhabditis elegans. Heredity, 111(4), 306-13. https://doi.org/10.1038/hdy.2013.50
Rodriguez, M., Snoek, L. B., De Bono, M., & Kammenga, J. E. (2013). Worms under stress: C. elegans stress response and its relevance to complex human disease and aging. Trends in Genetics, 29(6), 367-74. https://doi.org/10.1016/j.tig.2013.01.010
Snoek, L. B., Van der Velde, K. J., Arends, D., Li, Y., Beyer, A., Elvin, M., Fisher, J., Hajnal, A., Hengartner, M. O., Poulin, G. B., Rodriguez, M., Schmid, T., Schrimpf, S., Xue, F., Jansen, R. C., Kammenga, J. E., & Swertz, M. A. (2013). WormQTL--public archive and analysis web portal for natural variation data in Caenorhabditis spp. Nucleic Acids Research, 41(Database issue), D738-43. https://doi.org/10.1093/nar/gks1124
Snoek, L. B., Terpstra, I. R., Dekter, R., van den Ackerveken, A. F. J. M., & Peeters, A. J. M. (2013). Genetical genomics reveals large scale genotype-by-environment interactions in Arabisopsis thaliana. Frontiers in Genetics [E], 3, Article 317. https://doi.org/10.3389/fgene.2012.00317

2012

Scholarly publications

Viñuela, A., Snoek, L. B., Riksen, J. A. G., & Kammenga, J. E. (2012). Aging Uncouples Heritability and Expression-QTL in Caenorhabditis elegans. G3: Genes, Genomes, Genetics, 2(5), 597-605. https://doi.org/10.1534/g3.112.002212
Rodriguez, M., Snoek, L. B., Riksen, J. A. G., Bevers, R. P., & Kammenga, J. E. (2012). Genetic variation for stress-response hormesis in C. elegans lifespan. Experimental Gerontology, 47(8), 581-7. https://doi.org/10.1016/j.exger.2012.05.005

2011

Scholarly publications

Elvin, M., Snoek, B., Frejno, M., Klemstein, U., Kammenga, J. E., & Poulin, G. B. (2011). A fitness assay for comparing RNAi effects across multiple C. elegans genotypes. BMC Genomics, 12, 510. https://doi.org/10.1186/1471-2164-12-510
Viñuela, A., Snoek, L. B., Riksen, J. A. G., & Kammenga, J. E. (2011). Gene expression modifications by temperature-toxicants interactions in Caenorhabditis elegans. PLoS One, 6(9), e24676. https://doi.org/10.1371/journal.pone.0024676

2010

Scholarly publications

Viñuela, A., Snoek, L. B., Riksen, J. A. G., & Kammenga, J. E. (2010). Genome-wide gene expression analysis in response to organophosphorus pesticide chlorpyrifos and diazinon in C. elegans. PLoS One, 5(8), e12145. https://doi.org/10.1371/journal.pone.0012145
Li, Y., Breitling, R., Snoek, L. B., van der Velde, K. J., Swertz, M. A., Riksen, J., Jansen, R. C., & Kammenga, J. E. (2010). Global genetic robustness of the alternative splicing machinery in Caenorhabditis elegans. Genetics, 186(1), 405-10. https://doi.org/10.1534/genetics.110.119677
Viñuela, A., Snoek, L. B., Riksen, J. A. G., & Kammenga, J. E. (2010). Genome-wide gene expression regulation as a function of genotype and age in C. elegans. Genome Research, 20(7), 929-37. https://doi.org/10.1101/gr.102160.109
Terpstra, I. R., Snoek, L. B., Keurentjes, J. J. B., Peeters, A. J. M., & van den Ackerveken, A. F. J. M. (2010). Regulatory Network Identification by Genetical Genomics: Signaling Downstream of the Arabidopsis Receptor-Like Kinase ERECTA. Plant Physiology, 154, 1067-1078. https://doi.org/10.1104/pp.110.159996
van Zanten, M., Snoek, B., van Eck-Stouten, E. A., Proveniers, M. C. G., Torii, K. U., Voesenek, L. A. C. J., Peeters, A. J. M., & Millenaar, F. F. (2010). Ethylene-induced hyponastic growth in Arabidopsis thaliana is controlled by ERECTA. Plant Journal, 61, 83-95.
van Zanten, M., Snoek, L. B., van Eck-Stouten, E. A., Proveniers, M. C. G., Torii, K. U., Voesenek, L. A. C. J., Millenaar, F. F., & Peeters, A. J. M. (2010). ERECTA controls low light intensity-induced differential petiole growth independent of Phytochrome B and Crytochrome 2 action in Arabidopsis thaliana. Plant Signaling & Behavior, 5(3), 284-286. https://doi.org/10.4161/psb.5.3.10706

2009

Scholarly publications

Doroszuk, A., Snoek, L. B., Fradin, E., Riksen, J., & Kammenga, J. (2009). A genome-wide library of CB4856/N2 introgression lines of Caenorhabditis elegans. Nucleic Acids Research, 37(16), e110. https://doi.org/10.1093/nar/gkp528
van Zanten, M., Snoek, L. B., Proveniers, M. C. G., & Peeters, T. (2009). The many functions of ERECTA. Trends Plant Sci., 14(4), 214-218. https://doi.org/10.1016/j.tplants.2009.01.010
Tessadori, F., van Zanten, M., Pavlova, P., Clifton, R., Pontvianne, F., Snoek, L. B., Millenaar, F. F., Schulkes, R. K., Driel, R., Voesenek, L. A. C. J., Spillane, C., Pikaard, C. S., Fransz, P. F., & Peeters, A. J. M. (2009). Phytochrome B and histone deacetylase 6 control light-induced chromatin compaction in Arabidopsis thaliana. PLoS Genetics, 5(9), e1000638. doi:10.1371/journal.pgen.1000638. https://doi.org/10.1371/journal.pgen.1000638
Snoek, L. B. (2009). Natural variation in shade- and ethyleneinduced differential growth and transcription in Arabidopsis. [Doctoral thesis 1 (Research UU / Graduation UU), Utrecht University]. Utrecht University.
https://dspace.library.uu.nl/bitstream/handle/1874/37153/snoek.pdf?sequence=2

2007

Scholarly publications

Keurentjes, J. J. B., Fu, J., Terpstra, I. R., Garcia, J. M., van den Ackerveken, A. F. J. M., Snoek, L. B., Peeters, A. J. M., Vreugdenhil, D., Koornneef, M., & Jansen, M. R. C. (2007). Regulatory network construction in Arabidopsis using genome-wide gene expression QTLs. Proceedings of the National Academy of Sciences of the United States of America, 104, 1708-1713.
Keurentjes, J. J., Fu, J., Terpstra, I. R., Garcia, J. M., van den Ackerveken, A. F. J. M., Snoek, L. B., Peeters, A. J. M., Vreugdenhil, D., Koornneef, M., & Jansen, R. C. (2007). Regulatory network construction in Arabidopsis by using genome-wide gene expression quantitative trait loci. Proceedings of the National Academy of Sciences of the United States of America, 104(5), 1708-1713. https://doi.org/10.1073/pnas.0610429104

2006

Scholarly publications

Tessadori, F., van Zanten, M., Pavlova, P., Snoek, L. B., Millenaar, F. F., Schulkes, R. K., Keurentjes, J., Driel, R., Voesenek, L. A. C. J., Fransz, P., & Peeters, A. J. M. (2006). Variation in heterochromatin content betweenh Arabidopsis accessions is controlled by light-signalling components. In F. G. Tessadori (Ed.), Plasticity of Heterochromatin in Arabidopsis Nuclear Organization Group, Swammerdam Institute for Life Sciences, BioCentrum Amsterdam, University of Amsterdam.

Other output

Snoek, L. B. (2006). Genetics of hyponastic growth. Poster session presented at ALW Lunteren, Lunteren, Netherlands.
Snoek, L. B., Voesenek, L. A. C. J., & Peeters, A. J. M. (2006). Quantitative trait loci (QTL) mapping for hyponastic growth traits in Arabidopsis thaliana upon ethylene treatment. Poster session presented at 7th International Symposium on the Plant Hormone ETHYLENE, Pisa Italy.

2005

Other output

Snoek, L. B., Voesenek, L. A. C. J., & Peeters, A. J. M. (2005). Unravelling hyponastic growth in Arabidopsis thaliana; a QTL and “genetical genomics” approach. Poster session presented at Gordon Research Conference Quantitative Genetics And Genomics, Ventura, CA, USA.
Snoek, L. B., Voesenek, L. A. C. J., & Peeters, A. J. M. (2005). Unravelling hyponastic growth in Arabidopsis thaliana; a QTL and “genetical genomics” approach.. Poster session presented at Unknown event, Asilomar, USA.

2004

Other output

Snoek, L. B., Voesenek, L. A. C. J., & Peeters, A. J. M. (2004). "GENETICAL GENOMICS¿ OF PETIOLE MOVEMENT. Poster session presented at 15th International Conference on Arabidopsis Research, Berlin, Berlin, Germany.

2003

Scholarly publications

Smulders, M. J. M., Snoek, L. B., Booy, G., & Vosman, B. (2003). Complete loss of MHC genetic diversity in the Common Hamster (Cricetus cricetus) population in The Netherlands. Consequences for conservation strategies. Conservation Genetics, 4(4), 441-451. https://doi.org/10.1023/A:1024767114707

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