Publicaties
2025
Wetenschappelijke publicaties
Bañales, I., Mehrem, S. L., Landman, S. A., Alderkamp, M., Pijfers, L. C. P., Baijens, S., von Bredow, A., Schutte, P., Prevoo, S., van Asselt, G., Sagayaradj, S.
, Snoek, B., Michelmore, R.
, Lapin, D., & den Ackerveken, G. V. (2025).
A lettuce receptor-like kinase recognizes the highly conserved heptapeptide motif within microbial NEP1-like proteins. bioRxiv.
[DOI] [Portal] Hauser, J.
, Kooijman, P. C., Paddon, E. N. D., Verhoeven, A., Kalisvaart, J., Meesters, A. N.
, Snoek, B. L., & van Zanten, M. (2025).
Design and construction of a low-cost, low-input Open Top Chamber field warming setup to assess aboveground plant response to global warming.
Frontiers in Plant Science,
16, Article 1677291.
[DOI] [Portal]Luden, T., van Lieshout, J.
, Mehrem, S. L., Snoek, B. L., Willemse, J., & Offringa, R. (2025).
GreenLeafVI: A FIJI Plugin for High-Throughput Analysis of Leaf Chlorophyll Content.
Physiologia Plantarum,
177(5), Article e70588.
[DOI] [Portal]Dijkhuizen, R., van Eijnatten, A. L., Mehrem, S. L., van den Bergh, E., van Lieshout, J., Spaninks, K., Kaandorp, S., Offringa, R.
, Proveniers, M., van den Ackerveken, G., & Snoek, B. L. (2025).
From aerial drone to quantitative trait locus: leveraging next-generation phenotyping to reveal the genetics of color and height in field-grown Lactuca sativa.
Plant Journal,
123(3), Article e70405.
[DOI] [Portal] van Eijnatten, A. L., van Zon, L.
, Manousou, E., Bikineeva, M., Wubs, E. R. J., van der Putten, W. H., Morriën, E.
, Dutilh, B. E., & Snoek, L. B. (2025).
SpeSpeNet: an interactive and user-friendly tool to create and explore microbial correlation networks.
ISME Communications,
5(1), Article ycaf036.
[DOI] [Portal] 2024
Wetenschappelijke publicaties
Dijkhuizen, R. F., van Eijnatten, A. L., Mehrem, S. L., van den Bergh, E. S., van Lieshout, J., Spaninks, K., Kaandorp, S., Offringa, R.
, Proveniers, M., van den Ackerveken, G., & Snoek, B. L. (2024).
From aerial drone to QTL: Leveraging next-generation phenotyping to reveal the genetics of color and height in field-grown Lactuca sativa. bioRxiv.
[DOI] [Portal] van Workum, D. J. M.
, Mehrem, S. L., Snoek, B. L., Alderkamp, M. C., Lapin, D., Mulder, F. F. M.
, Van den Ackerveken, G., de Ridder, D., Schranz, M. E., & Smit, S. (2024).
Lactuca super-pangenome reduces bias towards reference genes in lettuce research.
BMC Plant Biology,
24(1), Article 1019.
[DOI] [Portal]Wijfjes, R. Y., Boesten, R., Becker, F. F. M., Theeuwen, T. P. J. M.
, Snoek, B. L., Mastoraki, M., Verheijen, J. J., Güvencli, N., Denkers, L. A. M., Koornneef, M., van Eeuwijk, F. A., Smit, S., de de Ridder, D., & Aarts, M. G. M. (2024).
Allelic variants confer Arabidopsis adaptation to small regional environmental differences.
Plant Journal,
120(4), 1662-1681.
[DOI] [Portal]Aerts, N., Hickman, R., Van Dijken, A. J. H., Kaufmann, M.
, Snoek, B. L., Pieterse, C. M. J., & Van Wees, S. C. M. (2024).
Architecture and dynamics of the abscisic acid gene regulatory network.
Plant Journal,
119(5), 2538-2563.
[DOI] [Portal] van Eijnatten, A. L., Sterken, M. G., Kammenga, J. E., Nijveen, H.
, & Snoek, B. L. (2024).
The effect of developmental variation on expression QTLs in a multi parental Caenorhabditis elegans population.
G3: Genes, Genomes, Genetics,
14(2), Article jkad273.
[DOI] [Portal] Hauptfeld, E., Pappas, N., van Iwaarden, S.
, Snoek, B. L., Aldas-Vargas, A.
, Dutilh, B. E., & von Meijenfeldt, F. A. B. (2024).
Integrating taxonomic signals from MAGs and contigs improves read annotation and taxonomic profiling of metagenomes.
Nature Communications,
15(1), Article 3373.
[DOI] [Repository] Oskam, L., Snoek, BL., Pantazopoulou, CK., van Veen, H., Matton, SEA., Dijkhuizen, R., & Pierik, R. (2024).
A low-cost open-source imaging platform reveals spatiotemporal insight into leaf elongation and movement.
Plant Physiology,
195(3), 1866-1879.
[DOI] [Portal] Ijadpanahsaravi, M., Snoek, L. B., Teertstra, W. R., & Wösten, H. A. B. (2024).
The impact of inter- and intra-species spore density on germination of the food spoilage fungus Aspergillus niger.
International Journal of Food Microbiology,
410, 1-10. Article 110495.
[DOI] [Repository] Huber, M., Julkowska, M. M. M.
, Snoek, L. B., van Veen, H., Toulotte, J., Kumar, V.
, Kajala, K., Sasidharan, R., & Pierik, R. (2024).
Towards increased shading capacity: A combined phenotypic and genetic analysis of rice shoot architecture.
Plants People Planet,
6(1), 128-147.
[DOI] [Repository] 2023
Wetenschappelijke publicaties
Snoek, B. L., Serin, E. A. R., Nijveen, H., Willems, L. A. J., Rienstra, J. A.
, Zanten, M. V., Hilhorst, H. W. M., & Ligterink, W. (2023).
Modulation of quantitative trait loci for Arabidopsis thaliana seed performance by the maternal and germination environment. bioRxiv.
[DOI] García-González, I., Martínez-García, L. B.
, Barel, J. M., Martens, H.
, Snoek, L. B., Hontoria, C., & De Deyn, G. B. (2023).
Cover crop identity determines root fungal community and arbuscular mycorrhiza colonization in following main crops.
European Journal of Soil Science,
74(6), Article e13427.
[DOI] [Repository]Sterken, M. G., Nijveen, H.
, van Zanten, M., Jiménez-Gómez, J. M., Geshnizjani, N., Willems, L. A. J., Rienstra, J., Hilhorst, H. W. M., Ligterink, W.
, & Snoek, B. L. (2023).
Plasticity of maternal environment-dependent expression-QTLs of tomato seeds.
Theoretical And Applied Genetics,
136(2), Article 5.
[DOI] [Repository]van Wijk, M. H., Riksen, J. A. G., Elvin, M., Poulin, G. B., Maulana, M. I., Kammenga, J. E.
, Snoek, B. L., & Sterken, M. G. (2023).
Cryptic genetic variation of expression quantitative trait locus architecture revealed by genetic perturbation in Caenorhabditis elegans.
G3: Genes, Genomes, Genetics,
13(5), Article jkad050.
[DOI] [Repository]Küpers, J. J., Snoek, B. L., Oskam, L., Pantazopoulou, C. K., Matton, S. E. A., Reinen, E., Liao, C. Y., Eggermont, E. D. C., Weekamp, H.
, Biddanda-Devaiah, M., Kohlen, W., Weijers, D.
, & Pierik, R. (2023).
Local light signaling at the leaf tip drives remote differential petiole growth through auxin-gibberellin dynamics.
Current Biology,
33(1), 75-85.
[DOI] [Repository] 2022
Wetenschappelijke publicaties
Van Schijndel, L.
, Snoek, B. L., & Ten Tusscher, K. (2022).
Embodiment in distributed information processing: Solid plants versus liquid ant colonies.
Quantitative Plant Biology,
3, 1-7. Article e27.
[DOI] [Repository]Vismans, G., van Bentum, S., Spooren, J., Song, Y., Goossens, P., Valls, J.
, Snoek, B. L., Thiombiano, B., Schilder, M., Dong, L., Bouwmeester, H. J., Pétriacq, P.
, Pieterse, C. M. J., Bakker, P. A. H. M., & Berendsen, R. L. (2022).
Coumarin biosynthesis genes are required after foliar pathogen infection for the creation of a microbial soil-borne legacy that primes plants for SA-dependent defenses.
Scientific Reports,
12(1), Article 22473.
[DOI] [Repository] De Long, J. R., Fry, E., Bloemhard, C., Blok, C., Duhamel, M., Messelink, G., Persijn, A., Pham, K.
, Snoek, L. B., & van Leeuwen, P. (2022).
Contrasting Management Techniques and Soil Types Affect Network Connections between Soil Properties and the Tulip Microbiome. SSRN.
[DOI] [Repository]van Schijndel, L.
, Snoek, B. L., & ten Tusscher, K. (2022).
Author comment: Embodiment in distributed information processing: “Solid” plants versus “liquid” ant colonies — R0/PR1.
Quantitative Plant Biology, Article 27.
[DOI] [Repository]Wilschut, R. A., De Long, J. R., Geisen, S., Hannula, S. E., Quist, C. W.
, Snoek, B., Steinauer, K.
, Wubs, E. R. J., Yang, Q., & Thakur, M. P. (2022).
Combined effects of warming and drought on plant biomass depend on plant woodiness and community type: a meta-analysis.
Proceedings. Biological sciences,
289(1984), 1-10. Article 20221178.
[DOI] [Repository]Hauptfeld, E., Pelkmans, J., Huisman, T. T., Anocic, A.
, Snoek, B. L., von Meijenfeldt, F. A. B., Gerritse, J., van Leeuwen, J., Leurink, G., van Lit, A., van Uffelen, R.
, Koster, M. C., & Dutilh, B. E. (2022).
A metagenomic portrait of the microbial community responsible for two decades of bioremediation of poly-contaminated groundwater.
Water Research,
221, 1-10. Article 118767.
[DOI] [Repository] Oyserman, B. O., Flores, S. S., Griffioen, T., Pan, X., van der Wijk, E., Pronk, L., Lokhorst, W., Nurfikari, A., Paulson, J. N., Movassagh, M., Stopnisek, N., Kupczok, A., Cordovez, V., Carrión, V. J., Ligterink, W.
, Snoek, B. L., Medema, M. H., & Raaijmakers, J. M. (2022).
Disentangling the genetic basis of rhizosphere microbiome assembly in tomato.
Nature Communications,
13(1), 1-16. Article 3228.
[DOI] [Repository]Maulana, M. I., Riksen, J. A. G.
, Snoek, B. L., Kammenga, J. E., & Sterken, M. G. (2022).
The genetic architecture underlying body-size traits plasticity over different temperatures and developmental stages in Caenorhabditis elegans.
Heredity,
128(5), 313-324.
[DOI] [Repository]van Sluijs, L., Bosman, K. J., Pankok, F., Blokhina, T., Wilten, J. I. H. A., Te Molder, D. M., Riksen, J. A. G.
, Snoek, B. L., Pijlman, G. P., Kammenga, J. E., & Sterken, M. G. (2022).
Balancing Selection of the Intracellular Pathogen Response in Natural Caenorhabditis elegans Populations. Frontiers in cellular and infection microbiology,
11, 1-14. Article 758331.
[DOI] [Repository]Pavlova, P.
, van Zanten, M., Snoek, B. L., de Jong, H., & Fransz, P. (2022).
Correction to: 2D morphometric analysis of Arabidopsis thaliana nuclei reveals characteristic profiles of different cell types and accessions (Chromosome Research, (2022), 30, 1, (5-24), 10.1007/s10577-021-09673-2).
Chromosome Research,
30(1), 25–27.
[DOI] [Repository]Pavlova, P.
, van Zanten, M., Snoek, B. L., de Jong, H., & Fransz, P. (2022).
2D morphometric analysis of Arabidopsis thaliana nuclei reveals characteristic profiles of different cell types and accessions.
Chromosome Research,
30(1), 5–24.
[DOI] [Repository]2021
Wetenschappelijke publicaties
Huber, M., Julkowska, M. M.
, Snoek, B. L., Veen, H. V., Toulotte, J., Kumar, V.
, Kajala, K., Sasidharan, R., & Pierik, R. (2021).
Towards increased shading potential: a combined phenotypic and genetic analysis of rice shoot architecture. bioRxiv.
[DOI] [Repository] Sterken, M. G., Nijveen, H.
, van Zanten, M., Jiménez-Gómez, J. M., Geshnizjani, N., Willems, L. A. J., Rienstra, J., Hilhorst, H. W. M., Ligterink, W.
, & Snoek, B. L. (2021).
Plasticity of maternal environment dependent expression-QTLs of tomato seeds. (pp. 1-44). bioRxiv.
[DOI] [Repository]Courbier, S., Snoek, B. L., Kajala, K., Li, L., van Wees, S. C. M., & Pierik, R. (2021).
Mechanisms of far-red light-mediated dampening of defense against Botrytis cinerea in tomato leaves.
Plant Physiology,
187(3), 1250-1266.
[DOI] [Repository] Snoek, B. L., Sterken, M. G., Nijveen, H., Volkers, R. J. M., Riksen, J., Rosenstiel, P. C., Schulenburg, H., & Kammenga, J. E. (2021).
The genetics of gene expression in a Caenorhabditis elegans multiparental recombinant inbred line population.
G3: Genes, Genomes, Genetics,
11(10), 1-10. Article jkab258.
[DOI] [Repository] Ochoa-Hueso, R., Delgado-Baquerizo, M., Risch, A. C., Schrama, M., Morriën, E., Barmentlo, S. H., Geisen, S., Hannula, S. E., Resch, M. C.
, Snoek, B. L., & van der Putten, W. H. (2021).
Ecosystem coupling: A unifying framework to understand the functioning and recovery of ecosystems.
One Earth,
4(7), 951-966.
[DOI] [Repository]de Groot, G. A., Geisen, S.
, Wubs, E. R. J., Meulenbroek, L., Laros, I.
, Snoek, L. B., Lammertsma, D. R., Hansen, L. H., & Slim, P. A. (2021).
The aerobiome uncovered: Multi-marker metabarcoding reveals potential drivers of turn-over in the full microbial community in the air.
Environment international,
154, 1-8. Article 106551.
[DOI] [Repository] Sterken, M. G., van Sluijs, L., Wang, Y. A., Ritmahan, W., Gultom, M. L., Riksen, J. A. G., Volkers, R. J. M.
, Snoek, L. B., Pijlman, G. P., & Kammenga, J. E. (2021).
Punctuated loci on chromosome IV determine natural variation in Orsay virus susceptibility of Caenorhabditis elegans strains Bristol N2 and Hawaiian CB4856.
Journal of Virology,
95(12), 1-14. Article e02430-20.
[DOI] [Repository]Yu, K., Stringlis, I. A., van Bentum, S., de Jonge, R., Snoek, B. L., Pieterse, C. M. J., Bakker, P. A. H. M., & Berendsen, R. L. (2021).
Transcriptome Signatures in Pseudomonas simiae WCS417 Shed Light on Role of Root-Secreted Coumarins in Arabidopsis-Mutualist Communication.
Microorganisms,
9(3), Article 575.
[DOI] [Repository] Woude, L. V. D., Piotrowski, M.
, Klaasse, G., Paulus, J. K., Krahn, D., Ninck, S., Kaschani, F., Kaiser, M., Novák, O., Ljung, K., Bulder, S.
, van Verk, M., Snoek, B. L., Fiers, M.
, Martin, N. I., van der Hoorn, R. A. L., Robert, S.
, Smeekens, S., & van Zanten, M. (2021).
The chemical compound 'Heatin' stimulates hypocotyl elongation and interferes with the Arabidopsis NIT1-subfamily of nitrilases.
Plant Journal,
106(6), 1523-1540.
[DOI] [Repository] Geisen, S., ten Hooven, F. C., Kostenko, O.
, Snoek, L. B., & van Der Putten, W. H. (2021).
Fungal root endophytes influence plants in a species-specific manner that depends on plant's growth stage.
Journal of Ecology,
109(4), 1618-1632.
[DOI] [Repository]Haagsman, M., Snoek, B., Peeters, A.
, Scager, K., Prins, F., & van Zanten, M. (2021).
Examiners' use of rubric criteria for grading bachelor theses.
Assessment and Evaluation in Higher Education,
46(8), 1269-1284.
[DOI] [Repository] Meisner, A.
, Snoek, B. L., Nesme, J., Dent, E., Jacquiod, S., Classen, A. T., & Priemé, A. (2021).
Soil microbial legacies differ following drying-rewetting and freezing-thawing cycles.
The ISME Journal,
15(4), 1207-1221.
[DOI] [Repository]2020
Wetenschappelijke publicaties
Sterken, M. G., Bevers, R. P. J., Volkers, R. J. M., Riksen, J. A. G., Kammenga, J. E.
, & Snoek, B. L. (2020).
Dissecting the eQTL Micro-Architecture in Caenorhabditis elegans.
Frontiers in Genetics,
11, 1-15. Article 501376.
[DOI] [Repository]Koorem, K.
, Snoek, B. L., Bloem, J., Geisen, S., Kostenko, O., Manrubia, M., Ramirez, K. S., Weser, C., Wilschut, R. A., & van der Putten, W. H. (2020).
Community-level interactions between plants and soil biota during range expansion.
Journal of Ecology,
108(5), 1860-1873.
[DOI] [Repository]Lindhout, F. W., Kooistra, R., Portegies, S., Herstel, L. J., Stucchi, R., Snoek, B. L., Altelaar, M., MacGillavry, H. D., Wierenga, C. J., & Hoogenraad, C. C. (2020).
Quantitative mapping of transcriptome and proteome dynamics during polarization of human iPSC-derived neurons.
eLife,
9.
[DOI] [Repository] Hartanto, M., Joosen, R. V. L.
, Snoek, B. L., Willems, L. A. J., Sterken, M. G., de Ridder, D., Hilhorst, H. W. M., Ligterink, W., & Nijveen, H. (2020).
Network Analysis Prioritizes DEWAX and ICE1 as the Candidate Genes for Major eQTL Hotspots in Seed Germination of Arabidopsis thaliana.
G3: Genes, Genomes, Genetics,
10(10), 4215–4226.
[DOI] [Repository]Geshnizjani, N.
, Snoek, B. L., Willems, L. A. J., Rienstra, J. A., Nijveen, H., Hilhorst, H. W. M., & Ligterink, W. (2020).
Detection of QTLs for genotype × environment interactions in tomato seeds and seedlings.
Plant, Cell and Environment,
43(8), 1973-1988.
[DOI] [Repository]Pascoal, S., Risse, J. E., Zhang, X., Blaxter, M., Cezard, T., Challis, R. J., Gharbi, K., Hunt, J., Kumar, S., Langan, E., Liu, X., Rayner, J. G., Ritchie, M. G.
, Snoek, B. L., Trivedi, U., & Bailey, N. W. (2020).
Field cricket genome reveals the footprint of recent, abrupt adaptation in the wild.
Evolution Letters,
4(1), 19-33.
[DOI] [Repository]Snoek, B. L., Sterken, M. G., Hartanto, M., van Zuilichem, A.-J., Kammenga, J. E., de Ridder, D., & Nijveen, H. (2020).
WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans.
Database : the journal of biological databases and curation,
2020, Article baz149.
[DOI] [Repository] 2019
Wetenschappelijke publicaties
Jovic, K., Grilli, J., Sterken, M. G.
, Snoek, B. L., Riksen, J. A. G., Allesina, S., & Kammenga, J. E. (2019).
Transcriptome resilience predicts thermotolerance in Caenorhabditis elegans.
BMC Biology,
17, Article 102.
[DOI] [Repository]Van Der Woude, L. C., Perrella, G.
, Snoek, B. L., Van Hoogdalem, M., Novák, O.
, Van Verk, M. C., Van Kooten, H. N., Zorn, L. E., Tonckens, R., Dongus, J. A.
, Praat, M., Stouten, E. A., Proveniers, M. C. G., Vellutini, E., Patitaki, E., Shapulatov, U., Kohlen, W., Balasubramanian, S., Ljung, K.
, ... Van Zanten, M. (2019).
HISTONE DEACETYLASE 9 stimulates auxin-dependent thermomorphogenesis in Arabidopsis thaliana by mediating H2A.Z depletion.
Proceedings of the National Academy of Sciences of the United States of America,
116(50), 25343-25354. Article 201911694.
[DOI] [Repository] Veen, G. F.
, Snoek, B. L., Bakx‐Schotman, T., Wardle, D. A., & Putten, W. H. (2019).
Relationships between fungal community composition in decomposing leaf litter and home‐field advantage effects.
Functional Ecology,
33(8), 1524-1535.
[DOI] [Repository]Wilschut, R. A., Geisen, S., Martens, H., Kostenko, O., de Hollander, M., Ten Hooven, F., Weser, C.
, Snoek, L. B., Bloem, J., Caković, D., Čelik, T., Koorem, K., Krigas, N., Manrubia, M., Ramirez, K. S., Tsiafouli, M. A., Vreš, B., & van der Putten, W. H. (2019).
Latitudinal variation in soil nematode communities under climate warming-related range-expanding and native plants.
Global Change Biology,
25(8), 2714-2726.
[DOI] [Repository]Ramirez, K. S.
, Snoek, L. B., Koorem, K., Geisen, S., Bloem, L. J., Ten Hooven, F., Kostenko, O., Krigas, N., Manrubia, M., Caković, D., van Raaij, D., Tsiafouli, M. A., Vreš, B., Čelik, T., Weser, C., Wilschut, R. A., & van der Putten, W. H. (2019).
Range-expansion effects on the belowground plant microbiome.
Nature Ecology and Evolution,
3(4), 604-611.
[DOI] [Repository]Wang, Y. A.
, Snoek, B. L., Sterken, M. G., Riksen, J. A. G., Stastna, J. J., Kammenga, J. E., & Harvey, S. C. (2019).
Genetic background modifies phenotypic and transcriptional responses in a C. elegans model of -synuclein toxicity.
BMC Genomics,
20(232), 1-12.
[DOI] [Repository]Snoek, B. L., Volkers, R. J. M., Nijveen, H., Petersen, C., Dirksen, P., Sterken, M. G., Nakad, R., Riksen, J. A. G., Rosenstiel, P., Stastna, J. J., Braeckman, B. P., Harvey, S. C., Schulenburg, H., & Kammenga, J. E. (2019).
A multi-parent recombinant inbred line population of C. elegans allows identification of novel QTLs for complex life history traits.
BMC Biology,
17(24), 24.
[DOI] [Repository] Geshnizjani, N., Khorami, S. S., Willems, L. A. J.
, Snoek, B. L., Hilhorst, H. W. M., & Ligterink, W. (2019).
The interaction between genotype and maternal nutritional environments affects tomato seed and seedling quality.
Journal of Experimental Botany,
70(10), 2905–2918.
[DOI] [Repository]Manrubia, M.
, Snoek, L. B., Weser, C., Veen, G. F., & van der Putten, W. H. (2019).
Belowground Consequences of Intracontinental Range-Expanding Plants and Related Natives in Novel Environments.
Frontiers in Microbiology,
10.
[DOI] [Repository]Kurm, V., van der Putten, W. H.
, Weidner, S., Geisen, S.
, Snoek, B. L., Bakx, T., & Hol, W. H. G. (2019).
Competition and predation as possible causes of bacterial rarity.
Environmental Microbiology,
21(4), 1356-1368.
[DOI] [Repository]2018
Wetenschappelijke publicaties
Ribeiro, P. R., Willems, L. A. J., Silva, A. T., Fernandez, L. G., de Castro, R. D., Bucher, J.
, Snoek, B. L., Hilhorst, H. W. M., & Ligterink, W. (2018).
Transcriptome profiling of Ricinus communis L. provides new insights underlying the mechanisms towards thermotolerance during seed imbibition and germination.
Industrial Crops and Products,
126, 380-393.
[DOI] [Repository]van Herwijnen, M. J. C., Driedonks, T. A. P., Snoek, B. L., Kroon, A. M. T.
, Kleinjan, M., Jorritsma, R., Pieterse, C. M. J., Hoen, E. N. M. N.
, & Wauben, M. H. M. (2018).
Abundantly present miRNAs in milk-derived extracellular vesicles are conserved between mammals.
Frontiers in Nutrition,
5, Article 81.
[DOI] [Repository] Gao, A. W., Sterken, M. G., de Bos, J. U., van Creij, J., Kamble, R.
, Snoek, B. L., Kammenga, J. E., & Houtkooper, R. H. (2018).
Natural genetic variation in C. Elegans identified genomic loci controlling metabolite levels.
Genome Research,
28(9), 1296-1308.
[DOI] [Repository]Ramirez, K. S., Geisen, S., Morriën, E.
, Snoek, B. L., & van der Putten, W. H. (2018).
Network Analyses Can Advance Above-Belowground Ecology.
Trends in Plant Science,
23(9), 759-768.
[DOI] [Repository]Dröge-Laser, W.
, Snoek, B. L., Snel, B., & Weiste, C. (2018).
The Arabidopsis bZIP transcription factor family: an update.
Current Opinion in Plant Biology,
45(Part A), 36-49.
[DOI] [Repository]Koorem, K., Kostenko, O.
, Snoek, L. B., Weser, C., Ramirez, K. S., Wilschut, R. A., & Van Der Putten, W. H. (2018).
Relatedness with plant species in native community influences ecological consequences of range expansions.
Oikos,
127(7), 981-990.
[DOI]Meisner, A., Jacquiod, S.
, Snoek, B. L., ten Hooven, F. C., & Van Der Putten, W. H. (2018).
Drought legacy effects on the composition of soil fungal and prokaryote communities.
Frontiers in Microbiology,
9, Article 294.
[DOI] [Repository]Geisen, S.
, Snoek, L. B., ten Hooven, F. C., Duyts, H., Kostenko, O., Bloem, J., Martens, H., Quist, C. W., Helder, J. A., & Van Der Putten, W. H. (2018).
Integrating quantitative morphological and qualitative molecular methods to analyse soil nematode community responses to plant range expansion.
Methods in Ecology and Evolution,
9(6), 1366-1378.
[DOI] [Repository]2017
Wetenschappelijke publicaties
Serin, E. A. R.
, Snoek, B., Nijveen, H., Willems, L. A. J., Jimenez-Gomez, J. M., Hilhorst, H. W. M., & Ligterink, W. (2017).
Construction of a High-Density Genetic Map from RNA-Seq Data for an Arabidopsis Bay-0 x Shahdara RIL Population.
Frontiers in Genetics,
8, Article 201.
[DOI] [Repository]Jovic, K., Sterken, M. G., Grilli, J., Bevers, R. P. J., Rodriguez, M., Riksen, J. A. G., Allesina, S., Kammenga, J. E.
, & Snoek, L. B. (2017).
Temporal dynamics of gene expression in heat-stressed Caenorhabditis elegans.
PLoS One,
12(12), 0189445. Article 0189445.
[DOI] [Repository]Veen, G. F., De Long, J. R., Kardol, P., Sundqvist, M. K.
, Snoek, L. B., & Wardle, D. A. (2017).
Coordinated responses of soil communities to elevation in three subarctic vegetation types.
Oikos,
126(11), 1586-1599.
[DOI]Harkes, P., Verhoeven, A., Sterken, M. G.
, Snoek, L. B., van den Elsen, S. J. J., Mooijman, P. J. W., Quist, C. W., Vervoort, M. T. W., & Helder, J. (2017).
The differential impact of a native and a non-native ragwort species (Senecioneae) on the first and second trophic level of the rhizosphere food web.
Oikos,
126(12), 1790-1803.
[DOI]Snoek, B. L., Pavlova, P., Tessadori, F.
, Peeters, A. J. M., Bourbousse, C., Barneche, F., de Jong, H., Fransz, P. F.
, & van Zanten, M. (2017).
Genetic Dissection of Morphometric Traits Reveals That Phytochrome B Affects Nucleus Size and Heterochromatin Organization in Arabidopsis thaliana.
G3: Genes, Genomes, Genetics,
7(8), 2519-2531.
[DOI] [Repository] Snoek, B. L., Sterken, M. G., Bevers, R. P. J., Volkers, R. J. M., Van't Hof, A., Brenchley, R., Riksen, J. A. G., Cossins, A. R., & Kammenga, J. E. (2017).
Contribution of trans regulatory eQTL to cryptic genetic variation in C. elegans.
BMC Genomics,
18(1), 500.
[DOI] [Repository] Sterken, M. G., van Bemmelen van der Plaat, L., Riksen, J. A. G., Rodriguez, M., Schmid, T., Hajnal, A., Kammenga, J. E.
, & Snoek, B. L. (2017).
Ras/MAPK Modifier Loci Revealed by eQTL in Caenorhabditis elegans.
G3: Genes, Genomes, Genetics,
7(9), 3185-3193.
[DOI] [Repository]Nijveen, H., Ligterink, W., Keurentjes, J. J. B., Loudet, O., Long, J., Sterken, M. G., Prins, P., Hilhorst, H. W., de Ridder, D., Kammenga, J. E.
, & Snoek, B. L. (2017).
AraQTL - workbench and archive for systems genetics in Arabidopsis thaliana.
Plant Journal,
89(6), 1225-1235.
[DOI] [Repository]Zych, K.
, Snoek, B. L., Elvin, M., Rodriguez, M., Van der Velde, K. J., Arends, D., Westra, H.-J., Swertz, M. A., Poulin, G., Kammenga, J. E., Breitling, R., Jansen, R. C., & Li, Y. (2017).
reGenotyper: Detecting mislabeled samples in genetic data.
PLoS One,
12(2), Article e0171324.
[DOI] [Repository]Morriën, E., Hannula, S. E.
, Snoek, L. B., Helmsing, N. R., Zweers, H., de Hollander, M., Soto, R. L., Bouffaud, M.-L., Buée, M., Dimmers, W., Duyts, H., Geisen, S., Girlanda, M., Griffiths, R. I., Jørgensen, H.-B., Jensen, J., Plassart, P., Redecker, D., Schmelz, R. M., ... van der Putten, W. H. (2017).
Soil networks become more connected and take up more carbon as nature restoration progresses.
Nature Communications,
8, 1-10. Article 14349.
[DOI] [Repository]2016
Wetenschappelijke publicaties
Crowther, T. W., Todd-Brown, K. E. O., Rowe, C. W., Wieder, W. R., Carey, J. C., Machmuller, M. B.
, Snoek, B. L., Fang, S., Zhou, G., Allison, S. D., Blair, J. M., Bridgham, S. D., Burton, A. J., Carrillo, Y., Reich, P. B., Clark, J. S., Classen, A. T.
, Dijkstra, F. A., Elberling, B., ... Bradford, M. A. (2016).
Quantifying global soil carbon losses in response to warming.
Nature,
540, 104-108.
[DOI]Wilschut, R. A., Oplaat, C.
, Snoek, L. B., Kirschner, J., & Verhoeven, K. J. F. (2016).
Natural epigenetic variation contributes to heritable flowering divergence in a widespread asexual dandelion lineage.
Molecular Ecology,
25(8), 1759-68.
[DOI]Kamkina, P.
, Snoek, L. B., Grossmann, J., Volkers, R. J. M., Sterken, M. G., Daube, M., Roschitzki, B., Fortes, C., Schlapbach, R., Roth, A., von Mering, C., Hengartner, M. O., Schrimpf, S. P., & Kammenga, J. E. (2016).
Natural Genetic Variation Differentially Affects the Proteome and Transcriptome in Caenorhabditis elegans.
Molecular and Cellular Proteomics,
15(5), 1670-80.
[DOI]Singh, K. D., Roschitzki, B.
, Snoek, L. B., Grossmann, J., Zheng, X., Elvin, M., Kamkina, P., Schrimpf, S. P., Poulin, G. B., Kammenga, J. E., & Hengartner, M. O. (2016).
Natural Genetic Variation Influences Protein Abundances in C. elegans Developmental Signalling Pathways.
PLoS One,
11(3), e0149418.
[DOI]Nakad, R.
, Snoek, L. B., Yang, W., Ellendt, S., Schneider, F., Mohr, T. G., Rösingh, L., Masche, A. C., Rosenstiel, P. C., Dierking, K., Kammenga, J. E., & Schulenburg, H. (2016).
Contrasting invertebrate immune defense behaviors caused by a single gene, the Caenorhabditis elegans neuropeptide receptor gene npr-1.
BMC Genomics,
17, Article 280.
[DOI] [Repository]2015
Wetenschappelijke publicaties
Sterken, M. G.
, Snoek, L. B., Kammenga, J. E., & Andersen, E. C. (2015).
The laboratory domestication of Caenorhabditis elegans.
Trends in Genetics,
31(5), 224-31.
[DOI]Schmid, T.
, Snoek, L. B., Fröhli, E., van der Bent, M. L., Kammenga, J., & Hajnal, A. (2015).
Systemic Regulation of RAS/MAPK Signaling by the Serotonin Metabolite 5-HIAA.
PLoS Genetics,
11(5), e1005236.
[DOI]Valba, O. V., Nechaev, S. K., Sterken, M. G.
, Snoek, L. B., Kammenga, J. E., & Vasieva, O. O. (2015).
On predicting regulatory genes by analysis of functional networks in C. elegans.
BioData Mining,
8, 33.
[DOI]Volkers, R. J. M.
, Snoek, L. B., Ruijssenaars, H. J., & de Winde, J. H. (2015).
Dynamic Response of Pseudomonas putida S12 to Sudden Addition of Toluene and the Potential Role of the Solvent Tolerance Gene trgI.
PLoS One,
10(7), e0132416.
[DOI]Thompson, O. A.
, Snoek, L. B., Nijveen, H., Sterken, M. G., Volkers, R. J. M., Brenchley, R., Van't Hof, A., Bevers, R. P. J., Cossins, A. R., Yanai, I., Hajnal, A., Schmid, T., Perkins, J. D., Spencer, D., Kruglyak, L., Andersen, E. C., Moerman, D. G., Hillier, L. W., Kammenga, J. E., & Waterston, R. H. (2015).
Remarkably Divergent Regions Punctuate the Genome Assembly of the Caenorhabditis elegans Hawaiian Strain CB4856.
Genetics,
200(3), 975-89.
[DOI]Preite, V.
, Snoek, B., Oplaat, C., Biere, A., van der Putten, W. H., & Verhoeven, K. J. F. (2015).
The epigenetic footprint of poleward range-expanding plants in apomictic dandelions.
Molecular Ecology,
24(17), 4406-18.
[DOI]Stastna, J. J.
, Snoek, L. B., Kammenga, J. E., & Harvey, S. C. (2015).
Genotype-dependent lifespan effects in peptone deprived Caenorhabditis elegans.
Scientific Reports,
5, 16259.
[DOI]2014
Wetenschappelijke publicaties
Maxeiner, S., Schmid, T., Snoek, L. B., Rodriguez, M., Largey, F., van der Bent, L., Kammenga, J. E., & Hajnal, A. F. (2014). Identifying modifiers of Wnt and EGFR/RAS/MAPK signaling through quantitative C. elegans genetics. FEBS Journal, 281, 474-474.
Snoek, L. B., Orbidans, H. E., Stastna, J. J., Aartse, A., Rodriguez, M., Riksen, J. A. G., Kammenga, J. E., & Harvey, S. C. (2014).
Widespread genomic incompatibilities in Caenorhabditis elegans.
G3: Genes, Genomes, Genetics,
4(10), 1813-1823.
[DOI] Hoogstrate, S. W., Volkers, R. J., Sterken, M. G., Kammenga, J. E.
, & Snoek, L. B. (2014).
Nematode endogenous small RNA pathways.
Worm,
3, e28234.
[DOI]He, H., de Souza Vidigal, D.
, Snoek, L. B., Schnabel, S., Nijveen, H., Hilhorst, H.
, & Bentsink, L. (2014).
Interaction between parental environment and genotype affects plant and seed performance in Arabidopsis.
Journal of Experimental Botany,
65(22), 6603-15.
[DOI]Snoek, L. B., Joeri van der Velde, K., Li, Y., Jansen, R. C., Swertz, M. A., & Kammenga, J. E. (2014).
Worm variation made accessible: Take your shopping cart to store, link, and investigate! Worm,
3(1), e28357.
[DOI] van der Bent, M. L., Sterken, M. G., Volkers, R. J. M., Riksen, J. A. G., Schmid, T., Hajnal, A., Kammenga, J. E.
, & Snoek, L. B. (2014).
Loss-of-function of β-catenin bar-1 slows development and activates the Wnt pathway in Caenorhabditis elegans.
Scientific Reports,
4, 4926.
[DOI]Sterken, M. G.
, Snoek, L. B., Bosman, K. J., Daamen, J., Riksen, J. A. G., Bakker, J., Pijlman, G. P., & Kammenga, J. E. (2014).
A heritable antiviral RNAi response limits Orsay virus infection in Caenorhabditis elegans N2.
PLoS One,
9(2), e89760.
[DOI]Snoek, L. B., Sterken, M. G., Volkers, R. J. M., Klatter, M., Bosman, K. J., Bevers, R. P. J., Riksen, J. A. G., Smant, G., Cossins, A. R., & Kammenga, J. E. (2014).
A rapid and massive gene expression shift marking adolescent transition in C. elegans.
Scientific Reports,
4, 3912.
[DOI] van der Velde, K. J., de Haan, M., Zych, K., Arends, D.
, Snoek, L. B., Kammenga, J. E., Jansen, R. C., Swertz, M. A., & Li, Y. (2014).
WormQTLHD--a web database for linking human disease to natural variation data in C. elegans.
Nucleic Acids Research,
42(Database issue), D794-801.
[DOI]2013
Wetenschappelijke publicaties
Fisher, K., Gee, F., Wang, S., Xue, F., Knapp, S., Philpott, M., Wells, C., Rodriguez, M.
, Snoek, L. B., Kammenga, J., & Poulin, G. B. (2013).
Maintenance of muscle myosin levels in adult C. elegans requires both the double bromodomain protein BET-1 and sumoylation.
Biology Open,
2(12), 1354-63.
[DOI]Volkers, R. J. M.
, Snoek, L. B., Hubar, C. J. V. H., Coopman, R.
, Chen, W., Yang, W., Sterken, M. G., Schulenburg, H., Braeckman, B. P., & Kammenga, J. E. (2013).
Gene-environment and protein-degradation signatures characterize genomic and phenotypic diversity in wild Caenorhabditis elegans populations.
BMC Biology,
11, 93.
[DOI]Green, J. W. M.
, Snoek, B., Kammenga, J. E., & Harvey, S. C. (2013).
Genetic mapping of variation in dauer larvae development in growing populations of Caenorhabditis elegans.
Heredity,
111(4), 306-13.
[DOI]Rodriguez, M.
, Snoek, L. B., De Bono, M., & Kammenga, J. E. (2013).
Worms under stress: C. elegans stress response and its relevance to complex human disease and aging.
Trends in Genetics,
29(6), 367-74.
[DOI]Snoek, L. B., Van der Velde, K. J., Arends, D., Li, Y., Beyer, A., Elvin, M., Fisher, J., Hajnal, A., Hengartner, M. O., Poulin, G. B., Rodriguez, M., Schmid, T., Schrimpf, S., Xue, F., Jansen, R. C., Kammenga, J. E., & Swertz, M. A. (2013).
WormQTL--public archive and analysis web portal for natural variation data in Caenorhabditis spp.
Nucleic Acids Research,
41(Database issue), D738-43.
[DOI] Snoek, L. B., Terpstra, I. R., Dekter, R.
, van den Ackerveken, A. F. J. M., & Peeters, A. J. M. (2013).
Genetical genomics reveals large scale genotype-by-environment interactions in Arabisopsis thaliana.
Frontiers in Genetics [E],
3, Article 317.
[DOI] [Repository] 2012
Wetenschappelijke publicaties
Viñuela, A.
, Snoek, L. B., Riksen, J. A. G., & Kammenga, J. E. (2012).
Aging Uncouples Heritability and Expression-QTL in Caenorhabditis elegans.
G3: Genes, Genomes, Genetics,
2(5), 597-605.
[DOI]Rodriguez, M.
, Snoek, L. B., Riksen, J. A. G., Bevers, R. P., & Kammenga, J. E. (2012).
Genetic variation for stress-response hormesis in C. elegans lifespan.
Experimental Gerontology,
47(8), 581-7.
[DOI]2011
Wetenschappelijke publicaties
Elvin, M.
, Snoek, B., Frejno, M., Klemstein, U., Kammenga, J. E., & Poulin, G. B. (2011).
A fitness assay for comparing RNAi effects across multiple C. elegans genotypes.
BMC Genomics,
12, 510.
[DOI]Viñuela, A.
, Snoek, L. B., Riksen, J. A. G., & Kammenga, J. E. (2011).
Gene expression modifications by temperature-toxicants interactions in Caenorhabditis elegans.
PLoS One,
6(9), e24676.
[DOI]2010
Wetenschappelijke publicaties
Viñuela, A.
, Snoek, L. B., Riksen, J. A. G., & Kammenga, J. E. (2010).
Genome-wide gene expression analysis in response to organophosphorus pesticide chlorpyrifos and diazinon in C. elegans.
PLoS One,
5(8), e12145.
[DOI]Li, Y., Breitling, R.
, Snoek, L. B., van der Velde, K. J., Swertz, M. A., Riksen, J., Jansen, R. C., & Kammenga, J. E. (2010).
Global genetic robustness of the alternative splicing machinery in Caenorhabditis elegans.
Genetics,
186(1), 405-10.
[DOI]Viñuela, A.
, Snoek, L. B., Riksen, J. A. G., & Kammenga, J. E. (2010).
Genome-wide gene expression regulation as a function of genotype and age in C. elegans.
Genome Research,
20(7), 929-37.
[DOI]Terpstra, I. R., Snoek, L. B., Keurentjes, J. J. B.
, Peeters, A. J. M., & van den Ackerveken, A. F. J. M. (2010).
Regulatory Network Identification by Genetical Genomics: Signaling Downstream of the Arabidopsis Receptor-Like Kinase ERECTA.
Plant Physiology,
154, 1067-1078.
[DOI] van Zanten, M., Snoek, B., van Eck-Stouten, E. A., Proveniers, M. C. G., Torii, K. U., Voesenek, L. A. C. J., Peeters, A. J. M., & Millenaar, F. F. (2010). Ethylene-induced hyponastic growth in Arabidopsis thaliana is controlled by ERECTA. Plant Journal, 61, 83-95.
van Zanten, M., Snoek, L. B., van Eck-Stouten, E. A., Proveniers, M. C. G., Torii, K. U.
, Voesenek, L. A. C. J., Millenaar, F. F., & Peeters, A. J. M. (2010).
ERECTA controls low light intensity-induced differential petiole growth independent of Phytochrome B and Crytochrome 2 action in Arabidopsis thaliana. Plant Signaling & Behavior,
5(3), 284-286.
[DOI] 2009
Wetenschappelijke publicaties
Doroszuk, A.
, Snoek, L. B., Fradin, E., Riksen, J., & Kammenga, J. (2009).
A genome-wide library of CB4856/N2 introgression lines of Caenorhabditis elegans.
Nucleic Acids Research,
37(16), e110.
[DOI]van Zanten, M., Snoek, L. B., Proveniers, M. C. G., & Peeters, T. (2009).
The many functions of ERECTA.
Trends Plant Sci.,
14(4), 214-218.
[DOI] Tessadori, F.
, van Zanten, M., Pavlova, P., Clifton, R., Pontvianne, F.
, Snoek, L. B., Millenaar, F. F., Schulkes, R. K., Driel, R.
, Voesenek, L. A. C. J., Spillane, C., Pikaard, C. S., Fransz, P. F.
, & Peeters, A. J. M. (2009).
Phytochrome B and histone deacetylase 6 control light-induced chromatin compaction in Arabidopsis thaliana.
PLoS Genetics,
5(9), e1000638. doi:10.1371/journal.pgen.1000638.
[DOI] [Repository]Snoek, L. B. (2009).
Natural variation in shade- and ethyleneinduced differential growth and transcription in Arabidopsis. [Doctoral thesis 1 (Research UU / Graduation UU), Utrecht University]. Utrecht University.
[Repository] 2007
Wetenschappelijke publicaties
Keurentjes, J. J. B., Fu, J., Terpstra, I. R., Garcia, J. M., van den Ackerveken, A. F. J. M., Snoek, L. B., Peeters, A. J. M., Vreugdenhil, D., Koornneef, M., & Jansen, M. R. C. (2007). Regulatory network construction in Arabidopsis using genome-wide gene expression QTLs. Proceedings of the National Academy of Sciences of the United States of America, 104, 1708-1713.
Keurentjes, J. J., Fu, J.
, Terpstra, I. R., Garcia, J. M.
, van den Ackerveken, A. F. J. M., Snoek, L. B., Peeters, A. J. M., Vreugdenhil, D., Koornneef, M., & Jansen, R. C. (2007).
Regulatory network construction in Arabidopsis by using genome-wide gene expression quantitative trait loci. Proceedings of the National Academy of Sciences of the United States of America,
104(5), 1708-1713.
[DOI]2006
Wetenschappelijke publicaties
Tessadori, F., van Zanten, M., Pavlova, P., Snoek, L. B., Millenaar, F. F., Schulkes, R. K., Keurentjes, J., Driel, R., Voesenek, L. A. C. J., Fransz, P., & Peeters, A. J. M. (2006). Variation in heterochromatin content betweenh Arabidopsis accessions is controlled by light-signalling components. In F. G. Tessadori (Ed.), Plasticity of Heterochromatin in Arabidopsis Nuclear Organization Group, Swammerdam Institute for Life Sciences, BioCentrum Amsterdam, University of Amsterdam.
Overige resultaten
Snoek, L. B. (2006). Genetics of hyponastic growth. Poster session presented at ALW Lunteren, Lunteren, Netherlands.
Snoek, L. B., Voesenek, L. A. C. J., & Peeters, A. J. M. (2006). Quantitative trait loci (QTL) mapping for hyponastic growth traits in Arabidopsis thaliana upon ethylene treatment. Poster session presented at 7th International Symposium on the Plant Hormone ETHYLENE, Pisa Italy.
2005
Overige resultaten
Snoek, L. B., Voesenek, L. A. C. J., & Peeters, A. J. M. (2005). Unravelling hyponastic growth in Arabidopsis thaliana; a QTL and “genetical genomics” approach. Poster session presented at Gordon Research Conference Quantitative Genetics And Genomics, Ventura, CA, USA.
Snoek, L. B., Voesenek, L. A. C. J., & Peeters, A. J. M. (2005). Unravelling hyponastic growth in Arabidopsis thaliana; a QTL and “genetical genomics” approach.. Poster session presented at Unknown event, Asilomar, USA.
2004
Overige resultaten
Snoek, L. B., Voesenek, L. A. C. J., & Peeters, A. J. M. (2004). "GENETICAL GENOMICS¿ OF PETIOLE MOVEMENT. Poster session presented at 15th International Conference on Arabidopsis Research, Berlin, Berlin, Germany.
2003
Wetenschappelijke publicaties
Smulders, M. J. M.
, Snoek, L. B., Booy, G., & Vosman, B. (2003).
Complete loss of MHC genetic diversity in the Common Hamster (Cricetus cricetus) population in The Netherlands. Consequences for conservation strategies.
Conservation Genetics,
4(4), 441-451.
[DOI]
Hugo R. Kruytgebouw
