Publicaties
2022
Wetenschappelijke publicaties
Neviani, V., Lutz, M., Oosterheert, W., Gros, P., & Kroon-Batenburg, L. (2022). Crystal structure of the second extracellular domain of human tetraspanin CD9: twinning and diffuse scattering. IUCrData, 7(9). https://doi.org/10.1107/S2414314622008525
2020
Wetenschappelijke publicaties
Oosterheert, W., Xenaki, K. T., Neviani, V., Pos, W., Doulkeridou, S., Manshande, J., Pearce, N. M., Kroon-batenburg, L. M., Lutz, M., Van Bergen En Henegouwen, P. M., & Gros, P. (2020). Implications for tetraspanin-enriched microdomain assembly based on structures of CD9 with EWI-F. Life Science Alliance, 3(11), [e202000883]. https://doi.org/10.26508/lsa.202000883
2019
Wetenschappelijke publicaties
De Klijn, T., Schreurs, A. M. M., & Kroon-batenburg, L. M. J. (2019). Rigid-body motion is the main source of diffuse scattering in protein crystallography. IUCrJ, 6(2), 277-289. https://doi.org/10.1107/S2052252519000927
Kroon-Batenburg, L. M. J., de Klijn, T., & Schreurs, A. M. M. (2019). Diffuse scattering in protein crystals is dominated by rigid body motions. Acta Crystallographica Section A: Foundations and Advances, 75, A38-A38. https://doi.org/10.1107/S0108767319099616
Smaldone, G., Ruggiero, A., Balasco, N., Abuhammad, A., Autiero, I., Caruso, D., Esposito, D., Ferraro, G., Gelardi, E. L. M., Moreira, M., Quareshy, M., Romano, M., Saaret, A., Selvam, I., Squeglia, F., Troisi, R., Kroon-Batenburg, L. M. J., Esposito, L., Berisio, R., & Vitagliano, L. (2019, Nov). The non-swapped monomeric structure of the arginine-binding protein from Thermotoga maritima. https://doi.org/10.1107/S2053230X1901464X
2018
Wetenschappelijke publicaties
Campeotto, I., Lebedev, A., Schreurs, A. M. M., Kroon-Batenburg, L. M. J., Lowe, E., Phillips, S. E. V., Murshudov, G. N., & Pearson, A. R. (2018). Pathological macromolecular crystallographic data affected by twinning, partial-disorder and exhibiting multiple lattices for testing of data processing and refinement tools. Scientific Reports, 8(1), [14876]. https://doi.org/10.1038/s41598-018-32962-6
Lutz, M., & Kroon - Batenburg, L. (2018). Order-Disorder in Diaquobis(salicylato)copper(II) Revisited. Croatica Chemica Acta, 91(2), 289-298. https://doi.org/10.5562/cca3362
2017
Wetenschappelijke publicaties
Kroon - Batenburg, L., Helliwell, J. R., Mcmahon, B., & Terwilliger, T. C. (2017). Raw diffraction data preservation and reuse: overview, update on practicalities and metadata requirements. IUCrJ, 4(1), 87-99. https://doi.org/10.1107/S2052252516018315
Helliwell, J. R., Mcmahon, B., Guss, J. M., & Kroon - Batenburg, L. (2017). The science is in the data. IUCrJ, 4(6), 714-722. https://doi.org/10.1107/S2052252517013690
Yang, S., Yan, Y., Huang, J., Petukhov, A. V., Kroon - Batenburg, L. M. J., Drechsler, M., Zhou, C., Tu, M., Granick, S., & Jiang, L. (2017). Giant capsids from lattice self-assembly of cyclodextrin complexes. Nature Communications, 8, [15856]. https://doi.org/10.1038/ncomms15856
2016
Wetenschappelijke publicaties
Helliwell, J. R., Tanley, S. W. M., Schreurs, A. M. M., & Kroon - Batenburg, L. (2016). Cisplatin coordination chemistry determination at hen egg white lysozyme His15 with ligand distances and angles, and their standard uncertainties, and also reporting a split occupancy effect. arXiv. https://doi.org/10.48550/arXiv.1606.01372
Tanley, S. W. M., Schreurs, A. M. M., Kroon - Batenburg, L., & Helliwell, J. R. (2016). Re-refinement of 4g4a: room-temperature X-ray diffraction study of cisplatin and its binding to His15 of HEWL after 14 months chemical exposure in the presence of DMSO. Acta Crystallographica Section F:Structural Biology Communications, 72(3), 253-254. https://doi.org/10.1107/S2053230X16000856
Tanley, S. W. M., Schreurs, A. M. M., Kroon - Batenburg, L., & Helliwell, J. R. (2016). Re-refinement of 4xan: hen egg-white lysozyme with carboplatin in sodium bromide solution. Acta Crystallographica Section F:Structural Biology Communications, 72(3), 251-252. https://doi.org/10.1107/S2053230X16000777
2015
Wetenschappelijke publicaties
Kroon-Batenburg, L. M. J., Tanley, S. W. M., Diederichs, K., Levy, C., Schreurs, A. M. M., & Helliwell, J. R. (2015). Response from Tanley et al. to Crystallography and chemistry should always go together: a cautionary tale of protein complexes with cisplatin and carboplatin. Acta crystallographica. Section D, biological crystallography, 71(9), 1982-1983. https://doi.org/10.1107/S1399004715014340
Kroon-Batenburg, L. M. J., Schreurs, A. M. M., Ravelli, R. G., & Gros, P. (2015). Accounting for partiality in serial crystallography using ray-tracing principles. Acta crystallographica. Section D, biological crystallography, 71(9), 1799-1811. https://doi.org/10.1107/S1399004715011803
2014
Wetenschappelijke publicaties
Tanley, S. W. M., Diederichs, K., Kroon - Batenburg, L., Levy, C., Schreurs, A. M. M., & Helliwell, J. R. (2014). Carboplatin binding to histidine. Acta crystallographica. Section F, Structural biology and crystallization communications, 70(9), 1135-1142. https://doi.org/10.1107/S2053230X14016161
Kroon - Batenburg, L., & Helliwell, J. R. (2014). Experiences with making diffraction image data available: What metadata do we need to archive? Acta crystallographica. Section D, biological crystallography, 70(10), 2502-2509. https://doi.org/10.1107/S1399004713029817
Elgersma, R. C., Kroon - Batenburg, L., Posthuma, G., Meeldijk, J. D., Rijkers, D. T. S., & Liskamp, R. M. J. (2014). PH-controlled aggregation polymorphism of amyloidogenic Aβ (16-22): Insights for obtaining peptide tapes and peptide nanotubes, as function of the N -terminal capping moiety. European Journal of Medicinal Chemistry, 88, 55-65. https://doi.org/10.1016/j.ejmech.2014.07.089
Tanley, S. W. M., Diederichs, K., Kroon-Batenburg, L. M. J., Schreurs, A. M. M., & Helliwell, J. R. (2014). Carboplatin binding to a model protein in non-NaCl conditions to eliminate partial conversion to cisplatin, and the use of different criteria to choose the resolution limit. IUCrJ, in press.
https://dspace.library.uu.nl/bitstream/handle/1874/290703/1309.4661.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/290703/1309.4661.pdf?sequence=1
2013
Wetenschappelijke publicaties
Beringer, D. X., & Kroon-Batenburg, L. M. J. (2013). The structure of the FnI-EGF-like tandem domain of coagulation factor XII solved using SIRAS. Acta crystallographica. Section F, Structural biology and crystallization communications, 69(2), 94-102. https://doi.org/10.1107/S1744309113000286
Tanley, S. W. M., Schreurs, A. M. M., Helliwell, J. R., & Kroon-Batenburg, L. M. J. (2013). Experience with exchange and archiving of raw data: comparison of data from two diffractometers and four software packages on a series of lysozyme crystals. Journal of Applied Crystallography, 46(1), 108-119. https://doi.org/10.1107/S0021889812044172
Beringer, D. X., Fischer, M. J. E., Meeldijk, J. D., van Donselaar, E. G., de Mol, N. J., & Kroon-Batenburg, L. M. J. (2013). Tissue-type plasminogen activator binds to Abeta and AIAPP amyloid fibrils with multiple domains. Amyloid - Journal of Protein Folding Disorders, 20(2), 113-121. https://doi.org/10.3109/13506129.2013.791810
Nieuwland, M., Ruizendaal, L., Brinkmann, A., Kroon-Batenburg, L. M. J., van Hest, J. C. M., & Löwik, D. W. P. M. (2013). A structural study of the self-assembly of a palmitoyl peptide amphiphile. Faraday discussions, 166, 361-379. https://doi.org/10.1039/C3FD00055A
Tanley, S. W. M., Diederichs, K., Kroon-Batenburg, L. M. J., Schreurs, A. M. M., & Helliwell, J. R. (2013). Experiences with archived raw diffraction images data: capturing cisplatin after chemical conversion of carboplatin in high salt conditions for a protein crystal. Journal of Synchrotron Radiation, 20, 880-883. https://doi.org/10.1107/S0909049513020724
2012
Wetenschappelijke publicaties
Tanley, S. W. M., Schreurs, A. M. M., Kroon-Batenburg, L. M. J., Meredith, J., Prendergast, R., Walsh, D., Bryant, P., Levy, C., & Helliwell, J. R. (2012). Structural studies of the effect that dimethyl sulfoxide has on cisplatin and carboplatin binding to histidine in a protein. Acta crystallographica. Section D, biological crystallography, 68(5), 601-612. https://doi.org/10.1107/S0907444912006907
Petit, A., Muller, B., Bruin, P., Meyboom, R., Piest, M., Kroon-Batenburg, L. M. J., de Leede, L. G., Hennink, W. E., & Vermonden, T. (2012). Modulating rheological and degradation properties of temperature-responsive gelling systems composed of blends of PCLA-PEG-PCLA triblock copolymers and their fully hexanoyl-capped derivatives. Acta Biomaterialia, 8(12), 4260-4267. https://doi.org/10.1016/j.actbio.2012.07.044
Tanley, S. W. M., Schreurs, A. M. M., Kroon-Batenburg, L. M. J., & Helliwell, J. R. (2012). Room-temperature X-ray diffraction studies of cisplatin and carboplatin binding to His15 of HEWL after prolonged chemical exposure. Acta crystallographica. Section F, Structural biology and crystallization communications, 68(11), 1300-1306. https://doi.org/10.1107/S1744309112042005
2011
Wetenschappelijke publicaties
Li, L., Wölfel, A., Schönleber, A., Mondal, S., Schreurs, A. M. M., Kroon-Batenburg, L. M. J., & van Smaalen, S. (2011). Modulated anharmonic ADPs are intrinsic to aperiodic crystals: a case study on incommensurate Rb2ZnCl4. Acta crystallographica. Section B, Structural science, 67(3), 205-217. https://doi.org/10.1107/S0108768111013814
Porta, J., Lovelace, J. J., Schreurs, A. M. M., Kroon-Batenburg, L. M. J., & Borgstahl, G. E. O. (2011). Processing incommensurately modulated protein diffraction data with Eval15. Acta crystallographica. Section D, biological crystallography, 67(7), 628-638. https://doi.org/10.1107/S0907444911017884
2010
Wetenschappelijke publicaties
Schreurs, A. M. M., Xian, X., & Kroon-Batenburg, L. M. J. (2010). EVAL15: a diffraction data integration method based on ab initio predicted profiles. Journal of Applied Crystallography, 43(1), 70-82.
https://dspace.library.uu.nl/bitstream/handle/1874/200532/he5436.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/200532/he5436.pdf?sequence=1
van de Manakker, F., Kroon-Batenburg, L. M. J., Vermonden, T., van Nostrum, C. F., & Hennink, W. E. (2010). Supramolecular hydrogels formed by ß-cyclodextrin self-association and host–guest inclusion complexes. Soft Matter, 6, 187-194.
2009
Wetenschappelijke publicaties
Bouma, B., Maas, C., Kroon-Batenburg, L. M. J., Kranenburg, O., Wu, Y., & Gebbink, M. F. B. G. (2009). Fibrin in blood clots forms natural amyloid. 700.
Teertstra, W. R., van der Velden, G. J., de Jong, J. F., Kruijtzer, J. A. W., Liskamp, R. M. J., Kroon-Batenburg, L. M. J., Mueller, W. H., Gebbink, M. F. B. G., & Woesten, H. A. B. (2009). The filament-specific rep1-1 repellent of the phytopathogen ustilago maydis forms functional surface-active amyloid-like fibrils. Journal of Biological Chemistry, 284, 9153-9159.
Bult, W., Seevinck, P. R., Krijger, G. C., Visser, T., Kroon-Batenburg, L. M. J., Bakker, C. J. G., Hennink, W. E., van het Schip, A. D., & Nijsen, J. F. W. (2009). Microspheres with Ultrahigh Holmium Content for Radioablation of Malignancies. Pharmaceutical Research, 26(6), 1371-1378. https://doi.org/10.1007/s11095-009-9848-8
https://dspace.library.uu.nl/bitstream/handle/1874/40260/micro_26.pdf?sequence=2
https://dspace.library.uu.nl/bitstream/handle/1874/40260/micro_26.pdf?sequence=2
2007
Overige resultaten
Teertstra, W. R., van der Velden, G., Kroon-Batenburg, L. M. J., de Jong, J. F., Kruytzer, J., Liskamp, R. M. J., Deelstra, H. J., Gebbink, M., Vranes, M., Bohlmann, R., Kahmann, R., Kämper, J., & Wösten, H. A. B. (2007). Repellents of Ustilago maydis function in cell wall integrity and development by forming amyloids. Abstract from Voorjaarsvergadering van de Nederlandse Vereniging voor Medische Microbiologie (NVMM) en de Nederlandse Vereniging voor Microbiologie, Papendal.
Gebbink, M. F. B. G., Bouma, B., Kranenburg, O. W., & Kroon-Batenburg, L. M. J. (2007). Method for interfering with blood coagulation by modulating cross-beta structures fibril formation. (Patent No. EP1864140).
2006
Wetenschappelijke publicaties
van Kuik, J. A., Vincent, S. J. F., Leeflang, B. R., Kroon-Batenburg, L. M. J., & Kamerling, J. P. (2006). Conformational analysis in aqueous solution and estimation of the persistence length of exopolysaccharides produced by Lactobacillus helveticus Lh59 and Streptococcus macedonicus Sc136. Canadian Journal of Chemistry, 84(4), 730-742.
https://dspace.library.uu.nl/bitstream/handle/1874/20060/Can%2520J%2520Chem%2520%2520730%2520742.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/20060/Can%2520J%2520Chem%2520%2520730%2520742.pdf?sequence=1
Leeflang, B. R., van Kuik, J. A., & Kroon-Batenburg, L. M. J. (2006). Oligosaccharides and cellulose crystal surfaces: computer simulations. A.C.S. symposium series, 930, 133-155.
2005
Wetenschappelijke publicaties
Sparr, E. M., Ganchev, D. N., Snel, M. M. E., Ridder, A. N. J. A., Kroon-Batenburg, L. M. J., Chupin, V. V., Rijkers, D. T. S., Killian, J. A., & de Kruijff, B. (2005). Molecular organization in striated domains induced by transmembrane alpha-helical peptides in dipalmitoyl phosphatidylcholine bilayers. Biochemistry, 44, 2-10. https://doi.org/10.1021/bi048047a
2003
Wetenschappelijke publicaties
Kranenburg, O. W., Kroon-Batenburg, L. M. J., Reijerkerk, A., Wu, Y. P., Voest, E. E., & Gebbink, M. F. B. G. (2003). Recombinant endostatin forms amyloid fibrils that bind and are cytotoxic to murine neuroblastoma cells in vitro. FEBS Letters, 539, 149-155.
https://dspace.library.uu.nl/bitstream/handle/1874/14144/10.1016-S0014-5793%2803%2900218-7.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/14144/10.1016-S0014-5793%2803%2900218-7.pdf?sequence=1
Duisenburg, A. J. M., Kroon-Batenburg, L. M. J., & Schreurs, A. M. M. (2003). An intensity evaluation method: EVAL-14. Journal of Applied Crystallography, 36, 220-229.
https://dspace.library.uu.nl/bitstream/handle/1874/14287/10.1107-S0021889802022628.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/14287/10.1107-S0021889802022628.pdf?sequence=1
Bouma, B., Kroon-Batenburg, L. M. J., Wu, Y. P., Brunjes, B., Posthuma, G., Kranenburg, O. W., de Groot, P. G., Voest, E. E., & Gebbink, M. F. B. G. (2003). Glycation induces formation of amyloid cross-beta structure in albumin. Journal of Biological Chemistry, 278(43), 41810-41819. http://www.ncbi.nlm.nih.gov/pubmed/12909637
2002
Wetenschappelijke publicaties
Nijsen, J. F. W., Van Het Schip, A. D., Van Steenbergen, M. J., Zielhuis, S. W., Kroon-Batenburg, L. M. J., Van De Weert, M., Van Rijk, P. P., & Hennink, W. E. (2002). Influence of neutron irradiation on holmium acetylacetonate loaded poly(L-lactic acid) microspheres. Biomaterials, 23(8), 1831-1839. https://doi.org/10.1016/S0142-9612(01)00309-X
Lommerse, J. P. M., van Rooijen, J. J. M., Kroon-Batenburg, L. M. J., Kamerling, J. P., & Vliegenthart, J. F. G. (2002). Conformational analysis of two xylose-containing N-glycans in aqueous solution by using 1H NMR ROESY and NOESY spectroscopy in combination with MD simulations. Carbohydrate Research, 337, 2279-2299.
https://dspace.library.uu.nl/bitstream/handle/1874/14553/ChR_337_p2279.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/14553/ChR_337_p2279.pdf?sequence=1
Kranenburg, O. W., Bouma, B. N., Kroon-Batenburg, L. M. J., Reijerkerk, A., Wu, Y. P., Voest, E. E., & Gebbink, M. F. B. G. (2002). Tissue-type plasminogen activator is a multiligand cross-beta structure receptor. Current Biology, 12, 1833-1839.
https://dspace.library.uu.nl/bitstream/handle/1874/14143/10.1016-S0960-9822%2802%2901224-1.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/14143/10.1016-S0960-9822%2802%2901224-1.pdf?sequence=1
de Jong, S. J., van Nostrum, C. F., Kroon-Batenburg, L. M. J., Kettenes-van den Bosch, J. J., & Hennink, W. E. (2002). Oligolactate-grafted dextran hydrogels: detection of stereocomplex crosslinks by X-ray diffraction. Journal of Applied Polymer Science, 86, 289-293.
https://dspace.library.uu.nl/bitstream/handle/1874/14969/Jong_p289-293_02.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/14969/Jong_p289-293_02.pdf?sequence=1
2001
Wetenschappelijke publicaties
Nijsen, J. F. W., Van Steenbergen, M. J., Kooijman, H., Talsma, H., Kroon-Batenburg, L. M. J., Van De Weert, M., Van Rijk, P. P., De Witte, A., Van Het Schip, A. D., & Hennink, W. E. (2001). Characterization of poly(L-lactic acid) microspheres loaded with holmium acetylacetonate. Biomaterials, 22(22), 3073-3081. https://doi.org/10.1016/S0142-9612(01)00055-2
Nijsen, J. F. W., van Steenbergen, M. J., Kooijman, H., Talsma, H., Kroon-Batenburg, L. M. J., van de Weert, M., van Rijk, P. P., de Witte, A., van het Schip, A. D., & Hennink, W. E. (2001). Characterization of poly (L-lactic acid) microspheres loaded with holmium aceylacetonate. Biomaterials, 22, 3073-3081.
Kroon-Batenburg, L. M. J., Spieser, S. A. H., Kroon, J., Ramzi, M., & Vroege, G. J. (2001). New insights in the structure of cellulose: solid state, accessibility and solvent interactions - a model for the cellulose/phosphoric acid system. Das Papier, T71(IPW 4/2001), 3-8.
1997
Wetenschappelijke publicaties
Kroon-Batenburg, L. M. J., & Kroon, J. (1997). The crystal and molecular structures of cellulose I and II. Glycoconjugate Journal, 14(5), 677-690. https://doi.org/10.1023/A:1018509231331
1995
Wetenschappelijke publicaties
Lommerse, J. P., Kroon-Batenburg, L. M., Kroon, J., Kamerling, J. P., & Vliegenthart, J. F. (1995). Conformations and internal mobility of a glycopeptide derived from bromelain using molecular dynamics simulations and NOESY analysis. Journal of Biomolecular NMR, 6(1), 79-94. http://link.springer.com/article/10.1007%2FBF00417494#page-1
Lommerse, J. P. M., Kroon-Batenburg, L. M. J., Kamerling, J. P., & Vliegenthart, J. F. G. (1995). Conformational analysis of the xylose-containing N-glycan of pineapple stem bromelain as part of the intact glycoprotein. Biochemistry, 34(25), 8196-8206. https://doi.org/10.1021/bi00025a027
1994
Wetenschappelijke publicaties
Kroon, J., Kroon-Batenburg, L. M. J., Leeflang, B. R., & Vliegenthart, J. F. G. (1994). Intramolecular versus intermolecular hydrogen bonding in solution. Journal of Molecular Structure, 322(1), 27-31. https://doi.org/10.1016/0022-2860(94)87018-7
Banic, Z., Kojic-Prodic, B., Kroon-Batenburg, L., & Keglevic, D. (1994). Conformational analysis and computer modelling of muramic acid δ-lactam structures. Carbohydrate Research, 259(2), 159-174. https://doi.org/10.1016/0008-6215(94)84055-5
1993
Wetenschappelijke publicaties
Kroon-Batenburg, L. M. J., Kroon, J., Leeflang, B. R., & Vliegenthart, J. F. G. (1993). Conformational analysis of methyl β-cellobioside by ROESY NMR spectroscopy and MD simulations in combination with the CROSREL method. Carbohydrate Research, 245(1), 21-42. https://doi.org/10.1016/0008-6215(93)80057-L
1992
Wetenschappelijke publicaties
Leeflang, B. R., Vliegenthart, J. F. G., Kroon-Batenburg, L. M. J., Van Eijck, B. P., & Kroon, J. (1992). A1H-NMR and MD study of intramolecular hydrogen bonds in methyl β-cellobioside. Carbohydrate Research, 230(1), 41-61. https://doi.org/10.1016/S0008-6215(00)90512-3
1990
Wetenschappelijke publicaties
Kroon-Batenburg, L. M. J., & Kroon, J. (1990). Solvent effect on the conformation of the hydroxymethyl group established by molecular dynamics simulations of methyl-β-D-glucoside in water. Biopolymers, 29(8-9), 1243-1248.
1989
Wetenschappelijke publicaties
Breg, J., Kroon-Batenburg, L. M. J., Strecker, G., Montreuil, J., & Vliegenthart, J. F. G. (1989). Conformational analysis of the sialylα(2→3/6)N-acetyllactosamine structural element occurring in glycoproteins, by two-dimensional NOE 1H-NMR spectroscopy in combination with energy calculations by hard-sphere exo-anomeric and molecular mechanics force-field with hydrogen-bonding potential. European Journal of Biochemistry, 178(3), 727-739. https://doi.org/10.1111/j.1432-1033.1989.tb14504.x