Dr. L.M.J. (Loes) Kroon-Batenburg

David de Wiedgebouw
Universiteitsweg 99
3584 CG Utrecht

Dr. L.M.J. (Loes) Kroon-Batenburg

Assistant Professor
Structural Biochemistry
l.m.j.kroon-batenburg@uu.nl

Publications

2022

Scholarly publications

Neviani, V., Lutz, M., Oosterheert, W., Gros, P., & Kroon-Batenburg, L. (2022). Crystal structure of the second extracellular domain of human tetraspanin CD9: twinning and diffuse scattering. IUCrData, 7(9). https://doi.org/10.1107/S2414314622008525

2020

Scholarly publications

Oosterheert, W., Xenaki, K. T., Neviani, V., Pos, W., Doulkeridou, S., Manshande, J., Pearce, N. M., Kroon-batenburg, L. M., Lutz, M., Van Bergen En Henegouwen, P. M., & Gros, P. (2020). Implications for tetraspanin-enriched microdomain assembly based on structures of CD9 with EWI-F. Life Science Alliance, 3(11), [e202000883]. https://doi.org/10.26508/lsa.202000883

2019

Scholarly publications

De Klijn, T., Schreurs, A. M. M., & Kroon-batenburg, L. M. J. (2019). Rigid-body motion is the main source of diffuse scattering in protein crystallography. IUCrJ, 6(2), 277-289. https://doi.org/10.1107/S2052252519000927
Kroon-Batenburg, L. M. J., de Klijn, T., & Schreurs, A. M. M. (2019). Diffuse scattering in protein crystals is dominated by rigid body motions. Acta Crystallographica Section A: Foundations and Advances, 75, A38-A38. https://doi.org/10.1107/S0108767319099616
Smaldone, G., Ruggiero, A., Balasco, N., Abuhammad, A., Autiero, I., Caruso, D., Esposito, D., Ferraro, G., Gelardi, E. L. M., Moreira, M., Quareshy, M., Romano, M., Saaret, A., Selvam, I., Squeglia, F., Troisi, R., Kroon-Batenburg, L. M. J., Esposito, L., Berisio, R., & Vitagliano, L. (2019, Nov). The non-swapped monomeric structure of the arginine-binding protein from Thermotoga maritima. https://doi.org/10.1107/S2053230X1901464X

2018

Scholarly publications

Campeotto, I., Lebedev, A., Schreurs, A. M. M., Kroon-Batenburg, L. M. J., Lowe, E., Phillips, S. E. V., Murshudov, G. N., & Pearson, A. R. (2018). Pathological macromolecular crystallographic data affected by twinning, partial-disorder and exhibiting multiple lattices for testing of data processing and refinement tools. Scientific Reports, 8(1), [14876]. https://doi.org/10.1038/s41598-018-32962-6
Lutz, M., & Kroon - Batenburg, L. (2018). Order-Disorder in Diaquobis(salicylato)copper(II) Revisited. Croatica Chemica Acta, 91(2), 289-298. https://doi.org/10.5562/cca3362

2017

Scholarly publications

Kroon - Batenburg, L., Helliwell, J. R., Mcmahon, B., & Terwilliger, T. C. (2017). Raw diffraction data preservation and reuse: overview, update on practicalities and metadata requirements. IUCrJ, 4(1), 87-99. https://doi.org/10.1107/S2052252516018315
Helliwell, J. R., Mcmahon, B., Guss, J. M., & Kroon - Batenburg, L. (2017). The science is in the data. IUCrJ, 4(6), 714-722. https://doi.org/10.1107/S2052252517013690
Yang, S., Yan, Y., Huang, J., Petukhov, A. V., Kroon - Batenburg, L. M. J., Drechsler, M., Zhou, C., Tu, M., Granick, S., & Jiang, L. (2017). Giant capsids from lattice self-assembly of cyclodextrin complexes. Nature Communications, 8, [15856]. https://doi.org/10.1038/ncomms15856

2016

Scholarly publications

Helliwell, J. R., Tanley, S. W. M., Schreurs, A. M. M., & Kroon - Batenburg, L. (2016). Cisplatin coordination chemistry determination at hen egg white lysozyme His15 with ligand distances and angles, and their standard uncertainties, and also reporting a split occupancy effect. arXiv. https://doi.org/10.48550/arXiv.1606.01372
Tanley, S. W. M., Schreurs, A. M. M., Kroon - Batenburg, L., & Helliwell, J. R. (2016). Re-refinement of 4g4a: room-temperature X-ray diffraction study of cisplatin and its binding to His15 of HEWL after 14 months chemical exposure in the presence of DMSO. Acta Crystallographica Section F:Structural Biology Communications, 72(3), 253-254. https://doi.org/10.1107/S2053230X16000856
Tanley, S. W. M., Schreurs, A. M. M., Kroon - Batenburg, L., & Helliwell, J. R. (2016). Re-refinement of 4xan: hen egg-white lysozyme with carboplatin in sodium bromide solution. Acta Crystallographica Section F:Structural Biology Communications, 72(3), 251-252. https://doi.org/10.1107/S2053230X16000777

2015

Scholarly publications

Kroon-Batenburg, L. M. J., Tanley, S. W. M., Diederichs, K., Levy, C., Schreurs, A. M. M., & Helliwell, J. R. (2015). Response from Tanley et al. to Crystallography and chemistry should always go together: a cautionary tale of protein complexes with cisplatin and carboplatin. Acta crystallographica. Section D, biological crystallography, 71(9), 1982-1983. https://doi.org/10.1107/S1399004715014340
Kroon-Batenburg, L. M. J., Schreurs, A. M. M., Ravelli, R. G., & Gros, P. (2015). Accounting for partiality in serial crystallography using ray-tracing principles. Acta crystallographica. Section D, biological crystallography, 71(9), 1799-1811. https://doi.org/10.1107/S1399004715011803

2014

Scholarly publications

Tanley, S. W. M., Diederichs, K., Kroon - Batenburg, L., Levy, C., Schreurs, A. M. M., & Helliwell, J. R. (2014). Carboplatin binding to histidine. Acta crystallographica. Section F, Structural biology and crystallization communications, 70(9), 1135-1142. https://doi.org/10.1107/S2053230X14016161
Kroon - Batenburg, L., & Helliwell, J. R. (2014). Experiences with making diffraction image data available: What metadata do we need to archive? Acta crystallographica. Section D, biological crystallography, 70(10), 2502-2509. https://doi.org/10.1107/S1399004713029817
Elgersma, R. C., Kroon - Batenburg, L., Posthuma, G., Meeldijk, J. D., Rijkers, D. T. S., & Liskamp, R. M. J. (2014). PH-controlled aggregation polymorphism of amyloidogenic Aβ (16-22): Insights for obtaining peptide tapes and peptide nanotubes, as function of the N -terminal capping moiety. European Journal of Medicinal Chemistry, 88, 55-65. https://doi.org/10.1016/j.ejmech.2014.07.089
Tanley, S. W. M., Diederichs, K., Kroon-Batenburg, L. M. J., Schreurs, A. M. M., & Helliwell, J. R. (2014). Carboplatin binding to a model protein in non-NaCl conditions to eliminate partial conversion to cisplatin, and the use of different criteria to choose the resolution limit. IUCrJ, in press.
https://dspace.library.uu.nl/bitstream/handle/1874/290703/1309.4661.pdf?sequence=1

2013

Scholarly publications

Beringer, D. X., & Kroon-Batenburg, L. M. J. (2013). The structure of the FnI-EGF-like tandem domain of coagulation factor XII solved using SIRAS. Acta crystallographica. Section F, Structural biology and crystallization communications, 69(2), 94-102. https://doi.org/10.1107/S1744309113000286
Tanley, S. W. M., Schreurs, A. M. M., Helliwell, J. R., & Kroon-Batenburg, L. M. J. (2013). Experience with exchange and archiving of raw data: comparison of data from two diffractometers and four software packages on a series of lysozyme crystals. Journal of Applied Crystallography, 46(1), 108-119. https://doi.org/10.1107/S0021889812044172
Beringer, D. X., Fischer, M. J. E., Meeldijk, J. D., van Donselaar, E. G., de Mol, N. J., & Kroon-Batenburg, L. M. J. (2013). Tissue-type plasminogen activator binds to Abeta and AIAPP amyloid fibrils with multiple domains. Amyloid - Journal of Protein Folding Disorders, 20(2), 113-121. https://doi.org/10.3109/13506129.2013.791810
Nieuwland, M., Ruizendaal, L., Brinkmann, A., Kroon-Batenburg, L. M. J., van Hest, J. C. M., & Löwik, D. W. P. M. (2013). A structural study of the self-assembly of a palmitoyl peptide amphiphile. Faraday discussions, 166, 361-379. https://doi.org/10.1039/C3FD00055A
Tanley, S. W. M., Diederichs, K., Kroon-Batenburg, L. M. J., Schreurs, A. M. M., & Helliwell, J. R. (2013). Experiences with archived raw diffraction images data: capturing cisplatin after chemical conversion of carboplatin in high salt conditions for a protein crystal. Journal of Synchrotron Radiation, 20, 880-883. https://doi.org/10.1107/S0909049513020724

2012

Scholarly publications

Tanley, S. W. M., Schreurs, A. M. M., Kroon-Batenburg, L. M. J., Meredith, J., Prendergast, R., Walsh, D., Bryant, P., Levy, C., & Helliwell, J. R. (2012). Structural studies of the effect that dimethyl sulfoxide has on cisplatin and carboplatin binding to histidine in a protein. Acta crystallographica. Section D, biological crystallography, 68(5), 601-612. https://doi.org/10.1107/S0907444912006907
Petit, A., Muller, B., Bruin, P., Meyboom, R., Piest, M., Kroon-Batenburg, L. M. J., de Leede, L. G., Hennink, W. E., & Vermonden, T. (2012). Modulating rheological and degradation properties of temperature-responsive gelling systems composed of blends of PCLA-PEG-PCLA triblock copolymers and their fully hexanoyl-capped derivatives. Acta Biomaterialia, 8(12), 4260-4267. https://doi.org/10.1016/j.actbio.2012.07.044
Tanley, S. W. M., Schreurs, A. M. M., Kroon-Batenburg, L. M. J., & Helliwell, J. R. (2012). Room-temperature X-ray diffraction studies of cisplatin and carboplatin binding to His15 of HEWL after prolonged chemical exposure. Acta crystallographica. Section F, Structural biology and crystallization communications, 68(11), 1300-1306. https://doi.org/10.1107/S1744309112042005

2011

Scholarly publications

Li, L., Wölfel, A., Schönleber, A., Mondal, S., Schreurs, A. M. M., Kroon-Batenburg, L. M. J., & van Smaalen, S. (2011). Modulated anharmonic ADPs are intrinsic to aperiodic crystals: a case study on incommensurate Rb2ZnCl4. Acta crystallographica. Section B, Structural science, 67(3), 205-217. https://doi.org/10.1107/S0108768111013814
Porta, J., Lovelace, J. J., Schreurs, A. M. M., Kroon-Batenburg, L. M. J., & Borgstahl, G. E. O. (2011). Processing incommensurately modulated protein diffraction data with Eval15. Acta crystallographica. Section D, biological crystallography, 67(7), 628-638. https://doi.org/10.1107/S0907444911017884

2010

Scholarly publications

Schreurs, A. M. M., Xian, X., & Kroon-Batenburg, L. M. J. (2010). EVAL15: a diffraction data integration method based on ab initio predicted profiles. Journal of Applied Crystallography, 43(1), 70-82.
https://dspace.library.uu.nl/bitstream/handle/1874/200532/he5436.pdf?sequence=1
van de Manakker, F., Kroon-Batenburg, L. M. J., Vermonden, T., van Nostrum, C. F., & Hennink, W. E. (2010). Supramolecular hydrogels formed by ß-cyclodextrin self-association and host–guest inclusion complexes. Soft Matter, 6, 187-194.

2009

Scholarly publications

Bouma, B., Maas, C., Kroon-Batenburg, L. M. J., Kranenburg, O., Wu, Y., & Gebbink, M. F. B. G. (2009). Fibrin in blood clots forms natural amyloid. 700.
Teertstra, W. R., van der Velden, G. J., de Jong, J. F., Kruijtzer, J. A. W., Liskamp, R. M. J., Kroon-Batenburg, L. M. J., Mueller, W. H., Gebbink, M. F. B. G., & Woesten, H. A. B. (2009). The filament-specific rep1-1 repellent of the phytopathogen ustilago maydis forms functional surface-active amyloid-like fibrils. Journal of Biological Chemistry, 284, 9153-9159.
Bult, W., Seevinck, P. R., Krijger, G. C., Visser, T., Kroon-Batenburg, L. M. J., Bakker, C. J. G., Hennink, W. E., van het Schip, A. D., & Nijsen, J. F. W. (2009). Microspheres with Ultrahigh Holmium Content for Radioablation of Malignancies. Pharmaceutical Research, 26(6), 1371-1378. https://doi.org/10.1007/s11095-009-9848-8
https://dspace.library.uu.nl/bitstream/handle/1874/40260/micro_26.pdf?sequence=2

2007

Other output

Teertstra, W. R., van der Velden, G., Kroon-Batenburg, L. M. J., de Jong, J. F., Kruytzer, J., Liskamp, R. M. J., Deelstra, H. J., Gebbink, M., Vranes, M., Bohlmann, R., Kahmann, R., Kämper, J., & Wösten, H. A. B. (2007). Repellents of Ustilago maydis function in cell wall integrity and development by forming amyloids. Abstract from Voorjaarsvergadering van de Nederlandse Vereniging voor Medische Microbiologie (NVMM) en de Nederlandse Vereniging voor Microbiologie, Papendal.
Gebbink, M. F. B. G., Bouma, B., Kranenburg, O. W., & Kroon-Batenburg, L. M. J. (2007). Method for interfering with blood coagulation by modulating cross-beta structures fibril formation. (Patent No. EP1864140).

2006

Scholarly publications

van Kuik, J. A., Vincent, S. J. F., Leeflang, B. R., Kroon-Batenburg, L. M. J., & Kamerling, J. P. (2006). Conformational analysis in aqueous solution and estimation of the persistence length of exopolysaccharides produced by Lactobacillus helveticus Lh59 and Streptococcus macedonicus Sc136. Canadian Journal of Chemistry, 84(4), 730-742.
https://dspace.library.uu.nl/bitstream/handle/1874/20060/Can%2520J%2520Chem%2520%2520730%2520742.pdf?sequence=1
Leeflang, B. R., van Kuik, J. A., & Kroon-Batenburg, L. M. J. (2006). Oligosaccharides and cellulose crystal surfaces: computer simulations. A.C.S. symposium series, 930, 133-155.

2005

Scholarly publications

Sparr, E. M., Ganchev, D. N., Snel, M. M. E., Ridder, A. N. J. A., Kroon-Batenburg, L. M. J., Chupin, V. V., Rijkers, D. T. S., Killian, J. A., & de Kruijff, B. (2005). Molecular organization in striated domains induced by transmembrane alpha-helical peptides in dipalmitoyl phosphatidylcholine bilayers. Biochemistry, 44, 2-10. https://doi.org/10.1021/bi048047a

2003

Scholarly publications

Kranenburg, O. W., Kroon-Batenburg, L. M. J., Reijerkerk, A., Wu, Y. P., Voest, E. E., & Gebbink, M. F. B. G. (2003). Recombinant endostatin forms amyloid fibrils that bind and are cytotoxic to murine neuroblastoma cells in vitro. FEBS Letters, 539, 149-155.
https://dspace.library.uu.nl/bitstream/handle/1874/14144/10.1016-S0014-5793%2803%2900218-7.pdf?sequence=1
Duisenburg, A. J. M., Kroon-Batenburg, L. M. J., & Schreurs, A. M. M. (2003). An intensity evaluation method: EVAL-14. Journal of Applied Crystallography, 36, 220-229.
https://dspace.library.uu.nl/bitstream/handle/1874/14287/10.1107-S0021889802022628.pdf?sequence=1
Bouma, B., Kroon-Batenburg, L. M. J., Wu, Y. P., Brunjes, B., Posthuma, G., Kranenburg, O. W., de Groot, P. G., Voest, E. E., & Gebbink, M. F. B. G. (2003). Glycation induces formation of amyloid cross-beta structure in albumin. Journal of Biological Chemistry, 278(43), 41810-41819. http://www.ncbi.nlm.nih.gov/pubmed/12909637

2002

Scholarly publications

Nijsen, J. F. W., Van Het Schip, A. D., Van Steenbergen, M. J., Zielhuis, S. W., Kroon-Batenburg, L. M. J., Van De Weert, M., Van Rijk, P. P., & Hennink, W. E. (2002). Influence of neutron irradiation on holmium acetylacetonate loaded poly(L-lactic acid) microspheres. Biomaterials, 23(8), 1831-1839. https://doi.org/10.1016/S0142-9612(01)00309-X
Lommerse, J. P. M., van Rooijen, J. J. M., Kroon-Batenburg, L. M. J., Kamerling, J. P., & Vliegenthart, J. F. G. (2002). Conformational analysis of two xylose-containing N-glycans in aqueous solution by using 1H NMR ROESY and NOESY spectroscopy in combination with MD simulations. Carbohydrate Research, 337, 2279-2299.
https://dspace.library.uu.nl/bitstream/handle/1874/14553/ChR_337_p2279.pdf?sequence=1
Kranenburg, O. W., Bouma, B. N., Kroon-Batenburg, L. M. J., Reijerkerk, A., Wu, Y. P., Voest, E. E., & Gebbink, M. F. B. G. (2002). Tissue-type plasminogen activator is a multiligand cross-beta structure receptor. Current Biology, 12, 1833-1839.
https://dspace.library.uu.nl/bitstream/handle/1874/14143/10.1016-S0960-9822%2802%2901224-1.pdf?sequence=1
de Jong, S. J., van Nostrum, C. F., Kroon-Batenburg, L. M. J., Kettenes-van den Bosch, J. J., & Hennink, W. E. (2002). Oligolactate-grafted dextran hydrogels: detection of stereocomplex crosslinks by X-ray diffraction. Journal of Applied Polymer Science, 86, 289-293.
https://dspace.library.uu.nl/bitstream/handle/1874/14969/Jong_p289-293_02.pdf?sequence=1

2001

Scholarly publications

Nijsen, J. F. W., Van Steenbergen, M. J., Kooijman, H., Talsma, H., Kroon-Batenburg, L. M. J., Van De Weert, M., Van Rijk, P. P., De Witte, A., Van Het Schip, A. D., & Hennink, W. E. (2001). Characterization of poly(L-lactic acid) microspheres loaded with holmium acetylacetonate. Biomaterials, 22(22), 3073-3081. https://doi.org/10.1016/S0142-9612(01)00055-2
Nijsen, J. F. W., van Steenbergen, M. J., Kooijman, H., Talsma, H., Kroon-Batenburg, L. M. J., van de Weert, M., van Rijk, P. P., de Witte, A., van het Schip, A. D., & Hennink, W. E. (2001). Characterization of poly (L-lactic acid) microspheres loaded with holmium aceylacetonate. Biomaterials, 22, 3073-3081.
Kroon-Batenburg, L. M. J., Spieser, S. A. H., Kroon, J., Ramzi, M., & Vroege, G. J. (2001). New insights in the structure of cellulose: solid state, accessibility and solvent interactions - a model for the cellulose/phosphoric acid system. Das Papier, T71(IPW 4/2001), 3-8.

1997

Scholarly publications

Kroon-Batenburg, L. M. J., & Kroon, J. (1997). The crystal and molecular structures of cellulose I and II. Glycoconjugate Journal, 14(5), 677-690. https://doi.org/10.1023/A:1018509231331

1995

Scholarly publications

Lommerse, J. P., Kroon-Batenburg, L. M., Kroon, J., Kamerling, J. P., & Vliegenthart, J. F. (1995). Conformations and internal mobility of a glycopeptide derived from bromelain using molecular dynamics simulations and NOESY analysis. Journal of Biomolecular NMR, 6(1), 79-94. http://link.springer.com/article/10.1007%2FBF00417494#page-1
Lommerse, J. P. M., Kroon-Batenburg, L. M. J., Kamerling, J. P., & Vliegenthart, J. F. G. (1995). Conformational analysis of the xylose-containing N-glycan of pineapple stem bromelain as part of the intact glycoprotein. Biochemistry, 34(25), 8196-8206. https://doi.org/10.1021/bi00025a027

1994

Scholarly publications

Kroon, J., Kroon-Batenburg, L. M. J., Leeflang, B. R., & Vliegenthart, J. F. G. (1994). Intramolecular versus intermolecular hydrogen bonding in solution. Journal of Molecular Structure, 322(1), 27-31. https://doi.org/10.1016/0022-2860(94)87018-7
Banic, Z., Kojic-Prodic, B., Kroon-Batenburg, L., & Keglevic, D. (1994). Conformational analysis and computer modelling of muramic acid δ-lactam structures. Carbohydrate Research, 259(2), 159-174. https://doi.org/10.1016/0008-6215(94)84055-5

1993

Scholarly publications

Kroon-Batenburg, L. M. J., Kroon, J., Leeflang, B. R., & Vliegenthart, J. F. G. (1993). Conformational analysis of methyl β-cellobioside by ROESY NMR spectroscopy and MD simulations in combination with the CROSREL method. Carbohydrate Research, 245(1), 21-42. https://doi.org/10.1016/0008-6215(93)80057-L

1992

Scholarly publications

Leeflang, B. R., Vliegenthart, J. F. G., Kroon-Batenburg, L. M. J., Van Eijck, B. P., & Kroon, J. (1992). A1H-NMR and MD study of intramolecular hydrogen bonds in methyl β-cellobioside. Carbohydrate Research, 230(1), 41-61. https://doi.org/10.1016/S0008-6215(00)90512-3

1990

Scholarly publications

Kroon-Batenburg, L. M. J., & Kroon, J. (1990). Solvent effect on the conformation of the hydroxymethyl group established by molecular dynamics simulations of methyl-β-D-glucoside in water. Biopolymers, 29(8-9), 1243-1248.

1989

Scholarly publications

Breg, J., Kroon-Batenburg, L. M. J., Strecker, G., Montreuil, J., & Vliegenthart, J. F. G. (1989). Conformational analysis of the sialylα(2→3/6)N-acetyllactosamine structural element occurring in glycoproteins, by two-dimensional NOE 1H-NMR spectroscopy in combination with energy calculations by hard-sphere exo-anomeric and molecular mechanics force-field with hydrogen-bonding potential. European Journal of Biochemistry, 178(3), 727-739. https://doi.org/10.1111/j.1432-1033.1989.tb14504.x