Publications
2022
Scholarly publications
El Mazouni, D., & Gros, P. (2022).
Cryo-EM structures of peripherin-2 and ROM1 suggest multiple roles in photoreceptor membrane morphogenesis.
Science advances,
8(45), eadd3677.
https://doi.org/10.1126/sciadv.add3677 De la O Becerra, K. I., Oosterheert, W., van den Bos, R. M., Xenaki, K. T., Lorent, J. H., Ruyken, M.
, Schouten, A., Rooijakkers, S. H. M.
, van Bergen en Henegouwen, P. M. P., & Gros, P. (2022).
Multifaceted Activities of Seven Nanobodies against Complement C4b.
Journal of Immunology,
208(9), 2207-2219.
https://doi.org/10.4049/jimmunol.2100647 Geisbrecht, B. V., Lambris, J. D.
, & Gros, P. (2022).
Complement component C3: A structural perspective and potential therapeutic implications.
Seminars in Immunology,
59, [101627].
https://doi.org/10.1016/j.smim.2022.101627Lamers, C.
, Xue, X., Smieško, M., van Son, H., Wagner, B., Berger, N., Sfyroera, G.
, Gros, P., Lambris, J. D., & Ricklin, D. (2022).
Insight into mode-of-action and structural determinants of the compstatin family of clinical complement inhibitors.
Nature Communications,
13(1), [5519].
https://doi.org/10.1038/s41467-022-33003-7Neviani, V., Lutz, M., Oosterheert, W., Gros, P., & Kroon-Batenburg, L. (2022).
Crystal structure of the second extracellular domain of human tetraspanin CD9: twinning and diffuse scattering.
IUCrData,
7(9).
https://doi.org/10.1107/S2414314622008525 2021
Scholarly publications
Geuijen, C. A. W.
, De Nardis, C., Maussang, D., Rovers, E., Gallenne, T., Hendriks, L. J. A., Visser, T., Nijhuis, R., Logtenberg, T., de Kruif, J.
, Gros, P., & Throsby, M. (2021).
Unbiased Combinatorial Screening Identifies a Bispecific IgG1 that Potently Inhibits HER3 Signaling via HER2-Guided Ligand Blockade.
Cancer Cell,
39(8), 1163-1164.
https://doi.org/10.1016/j.ccell.2021.07.015Ploscariu, N., Burnley, T., Gros, P., & Pearce, N. M. (2021).
Improving sampling of crystallographic disorder in ensemble refinement.
Acta Crystallographica Section D: Structural Biology,
77(11), 1357-1364. [D77].
https://doi.org/10.1107/S2059798321010044 Zwarthoff, S. A., Widmer, K., Kuipers, A., Strasser, J., Ruyken, M., Aerts, P. C., Haas, C. J. C. D., Ugurlar, D.
, Boer, M. A. D., Vidarsson, G., Strijp, J. A. G. V.
, Gros, P., Parren, P. W. H. I., Kessel, K. P. M. V., Preiner, J., Beurskens, F. J., Schuurman, J., Ricklin, D., & Rooijakkers, S. H. M. (2021).
C1q binding to surface-bound IgG is stabilized by C1r2s2 proteases.
Proceedings of the National Academy of Sciences,
118(26), 1-12. [e2102787118].
https://doi.org/10.1073/pnas.21027871182020
Scholarly publications
Oosterheert, W., Reis, J.
, Gros, P., & Mattevi, A. (2020).
An Elegant Four-Helical Fold in NOX and STEAP Enzymes Facilitates Electron Transport across Biomembranes-Similar Vehicle, Different Destination.
Accounts of Chemical Research,
53(9), 1969-1980.
https://doi.org/10.1021/acs.accounts.0c00400 Neviani, V., van Deventer, S.
, Wörner, T. P., Xenaki, K. T., van de Waterbeemd, M., Rodenburg, R. N. P., Wortel, I. M. N., Kuiper, J. K., Huisman, S.
, Granneman, J., van Bergen En Henegouwen, P. M. P., Heck, A. J. R., van Spriel, A. B.
, & Gros, P. (2020).
Site-specific functionality and tryptophan mimicry of lipidation in tetraspanin CD9.
The FEBS journal,
287(24), 5323-5344.
https://doi.org/10.1111/febs.15295 Wang, G., Chaihu, L., Tian, M., Shao, X., Dai, R.
, de Jong, R. N., Ugurlar, D., Gros, P., & Heck, A. J. R. (2020).
Releasing Nonperipheral Subunits from Protein Complexes in the Gas Phase.
Analytical Chemistry,
92(24), 15799–15805.
https://doi.org/10.1021/acs.analchem.0c02845 Oosterheert, W., & Gros, P. (2020).
Cryo-electron microscopy structure and potential enzymatic function of human six-transmembrane epithelial antigen of the prostate 1 (STEAP1).
Journal of Biological Chemistry,
295(28), 9502-9512.
https://doi.org/10.1074/jbc.RA120.013690 Oosterheert, W., Xenaki, K. T., Neviani, V., Pos, W.
, Doulkeridou, S., Manshande, J.
, Pearce, N. M., Kroon-batenburg, L. M., Lutz, M., Van Bergen En Henegouwen, P. M., & Gros, P. (2020).
Implications for tetraspanin-enriched microdomain assembly based on structures of CD9 with EWI-F.
Life Science Alliance,
3(11), [e202000883].
https://doi.org/10.26508/lsa.202000883 2019
Scholarly publications
Fenderico, N.
, van Scherpenzeel, R. C., Goldflam, M., Proverbio, D., Jordens, I., Kralj, T., Stryeck, S., Bass, T. Z., Hermans, G., Ullman, C., Aastrup, T.
, Gros, P., & Maurice, M. M. (2019).
Anti-LRP5/6 VHHs promote differentiation of Wnt-hypersensitive intestinal stem cells.
Nature Communications,
10(1), [365].
https://doi.org/10.1038/s41467-018-08172-zMastellos, D. C., Blom, A. M., Connolly, E. S., Daha, M. R., Geisbrecht, B. V., Ghebrehiwet, B.
, Gros, P., Hajishengallis, G., Holers, V. M., Huber-Lang, M., Kinoshita, T., Mollnes, T. E., Montgomery, R. A., Morgan, B. P., Nilsson, B., Pio, R., Ricklin, D., Risitano, A. M., Taylor, R. P., ... Lambris, J. D. (2019).
'Stealth' corporate innovation: an emerging threat for therapeutic drug development.
Nature Immunology,
20(11), 1409-1413.
https://doi.org/10.1038/s41590-019-0503-1van den Bos, R. M., Pearce, N. M., Granneman, J., Brondijk, T. H. C., & Gros, P. (2019).
Insights Into Enhanced Complement Activation by Structures of Properdin and Its Complex With the C-Terminal Domain of C3b.
Frontiers in Immunology,
10, 2097.
https://doi.org/10.3389/fimmu.2019.02097 Sharp, T. H., Boyle, A. L.
, Diebolder, C. A., Kros, A., Koster, A. J.
, & Gros, P. (2019).
Insights into IgM-mediated complement activation based on in situ structures of IgM-C1-C4b.
Proceedings of the National Academy of Sciences of the United States of America,
116(24), 11900-11905.
https://doi.org/10.1073/pnas.1901841116Mastellos, D. C., Blom, A. M., Connolly, E. S., Daha, M. R., Geisbrecht, B. V., Ghebrehiwet, B.
, Gros, P., Hajishengallis, G., Holers, V. M., Huber-Lang, M., Kinoshita, T., Mollnes, T. E., Montgomery, R. A., Morgan, B. P., Nilsson, B., Pio, R., Ricklin, D., Risitano, A. M., Taylor, R. P., ... Lambris, J. D. (2019).
Author Correction: 'Stealth' corporate innovation: an emerging threat for therapeutic drug development.
Nature Immunology,
20(11), 1556.
https://doi.org/10.1038/s41590-019-0531-x2018
Scholarly publications
On Behalf of the COMBAT Consortium
, & Gros, P. (2018).
Overactivity of alternative pathway convertases in patients with complement-mediated renal diseases.
Frontiers in Immunology,
9(APR), [612].
https://doi.org/10.3389/fimmu.2018.00612Oosterheert, W., van Bezouwen, L. S., Rodenburg, R. N. P., Granneman, J., Förster, F., Mattevi, A.
, & Gros, P. (2018).
Cryo-EM structures of human STEAP4 reveal mechanism of iron(III) reduction.
Nature Communications,
9(1), [4337].
https://doi.org/10.1038/s41467-018-06817-7 Mohlin, F. C.
, Gros, P., Mercier, E., Gris, J-C. R., & Blom, A. M. (2018).
Analysis of C3 Gene Variants in Patients With Idiopathic Recurrent Spontaneous Pregnancy Loss.
Frontiers in Immunology,
9, [1813].
https://doi.org/10.3389/fimmu.2018.01813Geuijen, C. A. W.
, De Nardis, C., Maussang, D., Rovers, E., Gallenne, T., Hendriks, L. J. A., Visser, T., Nijhuis, R., Logtenberg, T., de Kruif, J.
, Gros, P., & Throsby, M. (2018).
Unbiased Combinatorial Screening Identifies a Bispecific IgG1 that Potently Inhibits HER3 Signaling via HER2-Guided Ligand Blockade.
Cancer Cell,
33(5), 922-936.e10.
https://doi.org/10.1016/j.ccell.2018.04.003Ugurlar, D., Howes, S. C., de Kreuk, B-J., Koning, R. I., de Jong, R. N., Beurskens, F. J., Schuurman, J., Koster, A. J., Sharp, T. H., Parren, P. W. H. I.
, & Gros, P. (2018).
Structures of C1-IgG1 provide insights into how danger pattern recognition activates complement.
Science,
359(6377), 794-797.
https://doi.org/10.1126/science.aao4988 2017
Scholarly publications
Sharp, T. H., Faas, F. G. A.
, Koster, A. J., & Gros, P. (2017).
Imaging complement by phase-plate cryo-electron tomography from initiation to pore formation.
Journal of Structural Biology,
197(2), 155-162.
https://doi.org/10.1016/j.jsb.2016.09.008De Nardis, C., Hendriks, L. J. A., Poirier, E., Arvinte, T.
, Gros, P., Bakker, A. B. H., & de Kruif, J. (2017).
A new approach for generating bispecific antibodies based on a common light chain format and the stable architecture of human immunoglobulin G1.
Journal of Biological Chemistry,
292(35), 14706-14717.
https://doi.org/10.1074/jbc.M117.793497 Xue, X., Wu, J., Ricklin, D.
, Forneris, F., Di Crescenzio, P., Schmidt, C. Q.
, Granneman, J., Sharp, T. H., Lambris, J. D.
, & Gros, P. (2017).
Regulator-dependent mechanisms of C3b processing by factor i allow differentiation of immune responses.
Nature Structural and Molecular Biology,
24(8), 643-651.
https://doi.org/10.1038/nsmb.3427 Rodenburg, R. N. P., Snijder, J., van de Waterbeemd, M., Schouten, A., Granneman, J., Heck, A. J. R., & Gros, P. (2017).
Stochastic palmitoylation of accessible cysteines in membrane proteins revealed by native mass spectrometry.
Nature Communications,
8(1), [1280].
https://doi.org/10.1038/s41467-017-01461-z De Nardis, C., Lössl, P., Van Den Biggelaar, M., Madoori, P. K., Leloup, N., Mertens, K., Heck, A. J. R., & Gros, P. (2017).
Recombinant expression of the full-length ectodomain of LDL receptor-related protein 1 (LRP1) unravels phdependent conformational changes and the stoichiometry of binding with receptor-associated protein (RAP).
Journal of Biological Chemistry,
292(3), 912-924.
https://doi.org/10.1074/jbc.M116.758862 2016
Scholarly publications
Xue, X., Wu, J., Forneris, F., Ricklin, D., Di Crescenzio, P., Schmidt, C. Q.
, Granneman, J., Lambris, J. D.
, & Gros, P. (2016).
Structural insights into cofactor activity.
Immunobiology,
221(10), 1193.
https://doi.org/10.1016/j.imbio.2016.06.152 Sharp, T. H., Koster, A. J.
, & Gros, P. (2016).
Heterogeneous MAC Initiator and Pore Structures in a Lipid Bilayer by Phase-Plate Cryo-electron Tomography.
Cell Reports,
15(1), 1-8.
https://doi.org/10.1016/j.celrep.2016.03.002Forneris, F., Wu, J., Xue, X., Ricklin, D., Lin, Z., Sfyroera, G., Tzekou, A., Volokhina, E.
, Granneman, J. C. M., Hauhart, R., Bertram, P., Liszewski, M. K., Atkinson, J. P., Lambris, J. D.
, & Gros, P. (2016).
Regulators of complement activity mediate inhibitory mechanisms through a common C3b-binding mode.
EMBO Journal,
35(10), 1133-1149.
https://doi.org/10.15252/embj.201593673 Sharp, T. H., Koster, A. J.
, & Gros, P. (2016).
Imaging complement activation step-by-step on liposomes by phase-plate cryo-electron tomography.
Immunobiology,
221(10), 1194-1195.
https://doi.org/10.1016/j.imbio.2016.06.155Ricklin, D., Reis, E. S., Mastellos, D. C.
, Gros, P., & Lambris, J. D. (2016).
Complement component C3 – The “Swiss Army Knife” of innate immunity and host defense.
Immunological Reviews,
274(1), 33-58.
https://doi.org/10.1111/imr.12500Wang, G., de Jong, R. N., van den Bremer, E. T. J., Beurskens, F. J., Labrijn, A. F.
, Ugurlar, D., Gros, P., Schuurman, J., Parren, P. W. H. I.
, & Heck, A. J. R. (2016).
Molecular Basis of Assembly and Activation of Complement Component C1 in Complex with Immunoglobulin G1 and Antigen.
Molecular Cell,
63, 135-145.
https://doi.org/10.1016/j.molcel.2016.05.016 2015
Scholarly publications
Berends, E. T. M., Gorham, R. D., Ruyken, M., Soppe, J. A., Orhan, H., Aerts, P. C., de Haas, C. J. C.
, Gros, P., & Rooijakkers, S. H. M. (2015).
Molecular insights into the surface-specific arrangement of complement C5 convertase enzymes.
BMC Biology,
13, 93.
https://doi.org/10.1186/s12915-015-0203-8Kroon-Batenburg, L. M. J., Schreurs, A. M. M., Ravelli, R. G., & Gros, P. (2015).
Accounting for partiality in serial crystallography using ray-tracing principles.
Acta crystallographica. Section D, biological crystallography,
71(9), 1799-1811.
https://doi.org/10.1107/S1399004715011803 Vissers, L. ELM., Bonetti, M., Paardekooper Overman, J., Nillesen, W. M., Frints, S. G. M., de Ligt, J., Zampino, G., Justino, A., Machado, J. C., Schepens, M., Brunner, H. G., Veltman, J. A., Scheffer, H.
, Gros, P., Costa, J. L., Tartaglia, M., van der Burgt, I., Yntema, H. G., & den Hertog, J. (2015).
Heterozygous germline mutations in A2ML1 are associated with a disorder clinically related to Noonan syndrome.
European Journal of Human Genetics.
https://doi.org/10.1038/ejhg.2014.1152014
Scholarly publications
de Lau, W.
, Peng, W. C., Gros, P., & Clevers, H. (2014).
The R-spondin/Lgr5/Rnf43 module: Regulator of Wnt signal strength.
Genes and Development,
28(4), 305-316.
https://doi.org/10.1101/gad.235473.113Forneris, F., Burnley, B. T., & Gros, P. (2014).
Ensemble refinement shows conformational flexibility in crystal structures of human complement factor D.
Acta crystallographica. Section D, biological crystallography,
70(3), 733-743.
https://doi.org/10.1107/S1399004713032549 Diebolder, C. A., Beurskens, F. J.
, De Jong, R. N., Koning, R. I., Strumane, K., Lindorfer, M. A., Voorhorst, M., Ugurlar, D.
, Rosati, S., Heck, A. J. R., Van De Winkel, J. G. J., Wilson, I. A., Koster, A. J., Taylor, R. P., Saphire, E. O., Burton, D. R., Schuurman, J.
, Gros, P., & Parren, P. W. H. I. (2014).
Complement is activated by IgG hexamers assembled at the cell surface.
Science,
343(6176), 1260-1263.
https://doi.org/10.1126/science.1248943 2013
Scholarly publications
Gros, P., & Forneris, F. (2013).
Proteolysis, complex formation and conformational changes drive the complement pathways. In R. Randy, A. Urzhumtsev, U. Alexandre, & V. Lunin (Eds.),
Advancing Methods for Biomolecular Crystallography (pp. 297-307). (NATO Science for Peace and Security Series A: Chemistry and Biology).
https://doi.org/10.1007/978-94-007-6232-9-25 Peng, W. C., de Lau, W., Forneris, F., Granneman, J. C. M., Clevers, H. C., & Gros, P. (2013).
Structure of Stem Cell Growth Factor R-spondin 1 in Complex with the Ectodomain of Its Receptor LGR5.
Cell Reports [E],
3(6), 1885-1892.
https://doi.org/10.1016/j.celrep.2013.06.009 Peng, W. C., de Lau, W., Madoori, P. K., Forneris, F., Granneman, J. C. M., Clevers, H., & Gros, P. (2013).
Structures of Wnt-Antagonist ZNRF3 and Its Complex with R-Spondin 1 and Implications for Signaling.
PLoS One,
8(12), e83110. [e83110].
https://doi.org/10.1371/journal.pone.0083110 2012
Scholarly publications
Volokhina, E. B., Westra, D.
, Xue, X., Gros, P., van der Kar, N. C. A. J., & van den Heuvel, L. (2012).
Novel C3 mutation p.Lys65Gln in aHUS affects complement factor H binding.
Pediatric Nephrology,
27, 1519-1524.
https://doi.org/10.1007/s00467-012-2183-z Burnley, B. T., Afonine, P. V., Adams, P. D.
, & Gros, P. (2012).
Modelling dynamics in protein crystal structures by ensemble refinement.
eLife,
1, 1-29. [00311].
https://doi.org/10.7554/eLife.00311.001 van Galen, J.
, Olrichs, N. K., Schouten, A., Serrano, R. L., Nolte-'t Hoen, E. N. M.
, Eerland, R., Kaloyanova, D., Gros, P., & Helms, J. B. (2012).
Interaction of GAPR-1 with lipid bilayers is regulated by alternative homodimerization.
Biochimica et Biophysica Acta,
1818(9), 2175-2183.
https://doi.org/10.1016/j.bbamem.2012.04.016Hadders, M. A., Bubeck, D., Roversi, P., Hakobyan, S.
, Forneris, F., Morgan, B. P., Pangburn, M. K., Llorca, O., Lea, S. M.
, & Gros, P. (2012).
Assembly and regulation of the membrane attack complex based on structures of C5b6 and sC5b9.
Cell Reports [E],
1(3), 200-207.
https://doi.org/10.1016/j.celrep.2012.02.003 2011
Scholarly publications
Roussel-Jazédé, V. M. C., van Gelder, P.
, Sijbrandi, R., Rutten, L., Otto, B. R., Luirink, J.
, Gros, P., Tommassen, J. P. M., & van Ulsen, J. P. (2011).
Channel properties of the translocator domain of the autotransporter Hbp of Escherichia coli.
Molecular Membrane Biology,
28(3), 158-170.
https://doi.org/10.3109/09687688.2010.550328 2010
Scholarly publications
Serruto, D., Rappuoli, R., Scarselli, M., Gros, P., & van Strijp, J. A. G. (2010). Molecular mechanisms of complement evasion: learning from staphylococci and meningococci. Nature Reviews. Microbiology, 8, 393-399.
Forneris, F., Ricklin, D.
, Wu, J., Tzekou, A., Wallace, R. S., Lambris, J. D.
, & Gros, P. (2010).
Structures of C3b in complex with factors B and D give insight into complement convertase formation.
Science,
330(6012), 1816-1820.
https://doi.org/10.1126/science.1195821 2009
Scholarly publications
Fritzinger, D. C., Hew, B. E., Thorne, M., Pangburn, M. K.
, Gros, P., Janssen, B. J. C., & Vogel, C. W. (2009).
Functional characterization of human C3/cobra venom factor hybrid proteins for therapeutic complement depletion.
Developmental and Comparative Immunology,
33(1), 105-116.
https://doi.org/10.1016/j.dci.2008.07.006Janssen, B. J. C., Gomes, L., Koning, R. I., Svergun, D. I.
, Koster, A. J., Fritzinger, D. C.
, Vogel, C. W., & Gros, P. (2009).
Insights into complement convertase formation based on the structure of the factor B-cobra venom factor complex.
EMBO Journal,
28(16), 2469-2478.
https://doi.org/10.1038/emboj.2009.184 Wu, J., Wu, Y., Ricklin, D.
, Janssen, B. J. C., Lambris, J. D.
, & Gros, P. (2009).
Structure of complement fragment C3b–factor H and implications for host protection by complement regulators.
Nature Immunology,
10(7), 728-733.
https://doi.org/10.1038/ni.1755 Rutten, L., Wieczorek, B., Mannie, J-PBA., Kruithof, C. A., Dijkstra, H. P., Egmond, M. R., Lutz, M., Klein Gebbink, R. J. M., Gros, P., & van Koten, G. (2009). Solid-state structural characterization of cutinase-ECE-pincer-metal hybrids. Chemistry-A European Journal, 15(17), 4270-4280.
Rooijakkers, S. H. M.
, Wu, J., Ruyken, M., van Domselaar, R.
, Planken, K. L., Tzekou, A., Ricklin, D., Lambris, J. D.
, Janssen, B. J., van Strijp, J. A. G.
, & Gros, P. (2009).
Structural and functional implications of the alternative complement pathway C3 convertase stabilized by a staphylococcal inhibitor.
Nature Immunology,
10(7), 721-727.
http://www.ncbi.nlm.nih.gov/pubmed/19503103Rutten, L., Mannie, J-PBA., Stead, C. M., Raetz, C. R. H., Reynolds, C. M.
, Bonvin, A. M. J. J., Tommassen, J. P. M., Egmond, M. R., Trent, M. S.
, & Gros, P. (2009).
Active-site architecture and catalytic mechanism of the lipid A deacylase LpxR of Salmonella typhimurium.
Proceedings of the National Academy of Sciences of the United States of America,
106(6), 1960-1964.
https://doi.org/10.1073/pnas.0813064106https://dspace.library.uu.nl/bitstream/handle/1874/42725/1960.full.pdf?sequence=1 Poodt, P. W. G., Heijna, M. C. R., Schouten, A., Gros, P., van Enckevort, W. J. P., & Vlieg, E. (2009). Simple geometry for diffusion limited protein crystal growth: harnessing gravity to suppress convection. Crystal Growth & Design, 9(2), 885-888.
2008
Scholarly publications
Gros, P., Milder, F. J., & Janssen, B. J. C. (2008).
Complement driven by conformational changes.
Nature Reviews. Immunology,
8(1), 48-58.
https://doi.org/10.1038/nri2231 2007
Scholarly publications
Janssen, B. J. C., Read, R. J., Brünger, A. T.
, & Gros, P. (2007).
Crystallography: Crystallographic evidence for deviating C3b structure.
Nature,
448(7154).
https://doi.org/10.1038/nature06102 Rooijakkers, S. H. M.
, Milder, F. J., Bardoel, B. W., Ruyken, M., van Strijp, J. A. G.
, & Gros, P. (2007).
Staphylococcal complement inhibitor: structure and active sites.
Journal of Immunology,
179(5), 2989-2998.
https://dspace.library.uu.nl/bitstream/handle/1874/26148/13.pdf?sequence=1Milder, F. J., Gomes, L., Schouten, A., Janssen, B. J. C., Huizinga, E. G., Romijn, R. A., Hemrika, W., Roos, A., Daha, M. R.
, & Gros, P. (2007).
Factor B structure provides insights into activation of the central protease of the complement system.
Nature Structural and Molecular Biology,
14, 224-228.
https://dspace.library.uu.nl/bitstream/handle/1874/26877/08.pdf?sequence=1 Morlot, C., Thielens, N. M., Ravelli, R. B. G.
, Hemrika, W., Romijn, R. A., Gros, P., Cusack, S., & McCarthy, A. A. (2007).
Structural insights into the Slit-Robo complex.
Proceedings of the National Academy of Sciences of the United States of America,
5, 1538-1544.
https://dspace.library.uu.nl/bitstream/handle/1874/26888/11.pdf?sequence=1Morlot, C.
, Hemrika, W., Romijn, R. A., Gros, P., Cusack, S., & McCarthy, A. A. (2007).
Production of Slit2 LRR domains in mammalian cells for structural studies and the structure of human Slit2 domain 3.
Acta crystallographica. Section D, biological crystallography,
D63, 961-978.
https://dspace.library.uu.nl/bitstream/handle/1874/26887/10.pdf?sequence=1Arlaud, G. J., Barlow, P. N., Gaboriaud, C.
, Gros, P., & Narayana, S. V. L. (2007).
Deciphering complement mechanisms: The contributions of structural biology. Molecular Immunology,
44, 3809-3822.
https://dspace.library.uu.nl/bitstream/handle/1874/26830/01.pdf?sequence=1Herczenik, E.
, Bouma, B., Korporaal, J. A., Strangi, R.
, Zeng, Q., Gros, P., van Eck, M., van Berkel, T. J. C.
, Gebbink, M. F. B. G., & Akkerman, J. W. N. (2007).
Activation of human platelets by misfolded proteins.
Arteriosclerosis, Thrombosis and Vascular Biology,
27, 1657-1665.
https://dspace.library.uu.nl/bitstream/handle/1874/26090/04.pdf?sequence=1Morlot, C.
, Hemrika, W., Romijn, R. A., Gros, P., Cusack, S., & McCarthy, A. A. (2007).
Cloning, expression, crystallization and preliminary X-ray analysis of the first two Ig domains from human Roundabout 1 (Robo1). Acta crystallographica. Section F, Structural biology and crystallization communications,
F63, 689-691.
https://dspace.library.uu.nl/bitstream/handle/1874/26886/09.pdf?sequence=12006
Scholarly publications
van Ulsen, J. P., Gros, P., & Tommassen, J. P. M. (2006). Structure and function of the translocator domain of bacterial autotransporters. In R. Grisshammer, & S. Buchanan (Eds.), Structural biology of membrane proteins (pp. 270-287). RSC.
Brown, K. M., Kondeatis, E., Vaughan, R. W., Kon, S. P., Farmer, C. K. T., Taylor, J. D., He, X., Johnston, A., Horsfield, C.
, Janssen, B. J. C., Gros, P., Zhou, W., Sacks, S. H., & Sheerin, N. S. (2006).
Influence of Donor C3 Allotype on Late Renal-Transplantation Outcome.
New England Journal of Medicine,
354, 2014-2023.
https://dspace.library.uu.nl/bitstream/handle/1874/20064/2006-Brown-NEJM.pdf?sequence=1Milder, F. J., Raaijmakers, H. C. A., Vandeputte, D. A. A.
, Schouten, A., Huizinga, E. G., Romijn, R. A., Hemrika, W., Roos, A., Daha, M. R.
, & Gros, P. (2006).
Structure of complement component C2a: implications for convertase formation and substrate binding.
Structure,
14(10), 1587-1597.
https://dspace.library.uu.nl/bitstream/handle/1874/20068/10.1016-j.str.2006.08.008.pdf?sequence=1 Janssen, B. J. C., Christodoulidou, A., McCarthy, A. A., Lambris, J. D.
, & Gros, P. (2006).
Structure of C3b reveals conformational changes that underlie complement activity.
Nature,
444, 213-216.
https://dspace.library.uu.nl/bitstream/handle/1874/20065/10.1038-nature05172.pdf?sequence=1 Rutten, L., Geurtsen, J. J. G., Lambert, W., Smolenaers, J. J. M.
, Bonvin, A. M., de Haan, A., van der Ley, P.
, Egmond, M. R., Gros, P., & Tommassen, J. P. M. (2006).
Crystal structure and catalytic mechanism of the LPS 3-O-deacylase PagL from Pseudomonas aeruginosa.
Proceedings of the National Academy of Sciences of the United States of America,
103, 7071-7076.
https://doi.org/10.1073/pnas.0509392103 2005
Scholarly publications
Oomen, C. J., Hoogerhout, P., Kuipers, B., Vidarsson, G., van Alphen, L.
, & Gros, P. (2005).
Crystal Structure of an Anti-meningococcal Subtype P1.4 PorA Antibody Provides Basis for Peptide-Vaccine Design.
Journal of Molecular Biology,
351, 1070-1080.
https://doi.org/10.1016/j.jmb.2005.06.061Janssen, B. J. C., Huizinga, E. G., Raaijmakers, H. C. A., Roos, A., Daha, M. R., Nilsson-Ekdahl, K., Nilsson, B.
, & Gros, P. (2005).
Structures of complement component C3 provide insights into the function and evolution of immunity.
Nature,
437, 505-511.
https://dspace.library.uu.nl/bitstream/handle/1874/14832/nature04005.pdf?sequence=2 Weik, M.
, Schreurs, A. M. M., Leiros, H-K. S., Zaccai, G., Ravelli, R. B. G.
, & Gros, P. (2005).
Supercooled liquid-like solvent in trypsin crystals: implications for crystal annealing and temperature-controlled Z-ray radiation damage studies. Journal of Synchrotron Radiation,
12, 310-317.
https://doi.org/10.1107/S09090495050033162004
Scholarly publications
Oomen, C. J.
, van Ulsen, J. P., van Gelder, P., Feijen, M.
, Tommassen, J. P. M., & Gros, P. (2004).
Structure of the translocator domain of a bacterial autotransporter.
EMBO Journal,
23, 1257-1266.
https://dspace.library.uu.nl/bitstream/handle/1874/14583/10.1038-sj.emboj.7600148.pdf?sequence=1Other output
Valentijn, K. M., de Koning, R., Derks, Y., van Doorn, J. M., Schouten, A., Koerten, H. K., van der Horst, D. J., Gros, P., Koster, A. J., & Rodenburg, C. W. (2004). Preliminary model of the three-dimensional structure insect lipoprotein HDLp by combining electron microscopy and X-ray crystallography. 327-328. Abstract from 13th European Microscopy Congress, University of Antwerp, Belgium.
Valentijn, K. M., de Koning, R., Derks, Y., van Doorn, J. M., Schouten, A., Koerten, H. K., van der Horst, D. J., Gros, P., Koster, A. J., & Rodenburg, C. W. (2004). Preliminary three-dimensional model of insect lipoprotein HDLp by using electron microscopy and X-ray crystallography. 11514-11515. Abstract from 62th Annual Meeting of the Microscopy Society of America, Savanna, Georgia, USA.
2003
Scholarly publications
Vandeputte-Rutten, L., Bos, M. P., Tommassen, J. P. M., & Gros, P. (2003).
Crystal structure of neisserial surface protein A (NspA), a conserved outer membrane protein with vaccine potential. Journal of Biological Chemistry,
278(27), 24825-24830.
https://dspace.library.uu.nl/bitstream/handle/1874/14289/10.1074-jbc.M302803200.pdf?sequence=1 Scheres, S. H. W., & Gros, P. (2003). Development of a force field for conditional optimization of protein structure. Acta crystallographica. Section D, biological crystallography, 59, 438-446.
Agianian, B., Tucker, P. A.
, Schouten, A., Leonard, K., Bullard, B.
, & Gros, P. (2003).
Structure of a Drosophila Sigma Class Glutathione S-transferase Reveals a Novel Active Site Topography Suited for Lipid Peroxidation Products. Journal of Molecular Biology,
326, 151-165.
https://dspace.library.uu.nl/bitstream/handle/1874/14290/10.1016-S0022-2836%2802%2901327-X.pdf?sequence=1Oomen, C. J., Hoogerhout, P.
, Bonvin, A. M. J. J., Kuipers, B., Brughhe, H., Timmermans, H., Hasely, S. R.
, van Alphen, L., & Gros, P. (2003).
Immunogenicity of peptide-vaccine candidates predicted by molecular dynamics simulations. Journal of Molecular Biology,
328, 1083-1089.
https://doi.org/10.1016/S0022-2836(03)00377-22002
Scholarly publications
van Tiel, C. M.
, Schouten, A., Snoek, G. T., Gros, P., & Wirtz, K. W. A. (2002).
The structure of phosphatidylinositol transfer protein α reveals sites for phospholipid binding and membrane association with major implications for its function. FEBS Letters,
531, 69-73.
https://dspace.library.uu.nl/bitstream/handle/1874/14283/12.Van%2520Tiel%25202002%2520pp%252069-73.pdf?sequence=1Kramer, R. A., Brandenburg, K.
, Vandeputte-Rutten, L., Werkhoven, M.
, Gros, P., Dekker, N.
, & Egmond, M. R. (2002).
Lipopolysaccharide regions involved in the activation of Escherichia coli outer membrane protease OmpT.
European Journal of Biochemistry,
269, 1746-1752.
https://dspace.library.uu.nl/bitstream/handle/1874/14272/9.Kramer2002%2520pp1746-52.pdf?sequence=1Huizinga, E. G., Tsuji, S.
, Romijn, R. A. P., Schiphorst, M. E., de Groot, P. G., Sixma, J. J.
, & Gros, P. (2002).
Structures of glycoprotein Ibα and its complex with von Willebrand Factor A1 domain.
Science,
297, 1176-1179.
https://dspace.library.uu.nl/bitstream/handle/1874/14142/Huizinga_p1176-1179_02.pdf?sequence=1 Schouten, A., Agianian, B., Westerman, J.
, Kroon, J., Wirtz, K. W. A., & Gros, P. (2002).
Structure of apo-phosphatidylinositol transfer protein α provides insight into membrane association. EMBO Journal,
21(9), 2117-2121.
https://dspace.library.uu.nl/bitstream/handle/1874/14281/10Schouten%25202002%2520pp%25202117-2121.pdf?sequence=1 Weik, M., Berges, J., Raves, M., Gros, P., McSweeney, S., Silman, I., Sussman, J. L., Houee-Levin, C., & Ravelli, R. B. G. (2002). Evidence for the formation of disulfide radicals in protein crystals upon X-ray irridiation. Journal of Synchrotron Radiation, 9, 342-346.
Other output
Bos, M. P., Vandeputte-Rutten, L., Gros, P., & Tommassen, J. P. M. (2002). Structure-function analysis of the neisserial surface protein A.. Abstract from Thirteenth International Pathogenic Neisseria Cnference, Oslo, Norway.
2001
Scholarly publications
Huizinga, E. G., Schouten, A., Connolly, T. M., Kroon, J., Sixma, J. J.
, & Gros, P. (2001).
The structure of leech anti-platelet protein, an inhibitor of haemostasis.
Acta Crystallographica Section D: Biological Crystallography,
57(8), 1071-1078.
https://doi.org/10.1107/S0907444901007405 Romijn, R. A. P., Bouma, B., Wuyster, W., Gros, P., Kroon, J., Sixma, J. J., & Huizinga, E. G. (2001). Identification of the collagen-binding site of the von Willebrand Factor A3-domain. Journal of Biological Chemistry, 276, 9985-9991.
Vandeputte-Rutten, L., Kramer, R. A., Kroon, J., Dekker, N., Egmond, M. R., & Gros, P. (2001). Crystal structure of the outer membrane protease OmpT from Escherichia coli suggests a novel catalytic site EMBO Journal. EMBO Journal, 20, 5033-5039.
Kroon, J., Weik, M., Kryger, G., Schreurs, A. M. M., Bouma, B. N., Silman, I., Sussman, J. L., & Gros, P. (2001). Solvent behaviour in flash-cooled protein crystals at cryogenic temperatures. Acta Crystallographica, D57, 566-573.
Kroon, J., Weik, M., Ravelli, R. B. G., Silman, I., Sussman, J. L., & Gros, P. (2001). Specific protein dynamics near the solvent glass transition assayed by radiation-induced structural changes. Protein Science, 10, 1953-1961.
Kramer, R. A., Vandeputte-Rutten, L., de Roon, G. J., Gros, P., Dekker, N., & Egmond, M. R. (2001). Identification of essential acidic residues of outer membrane protease OmpT supports a novel active site. FEBS Letters, 505, 426-430.
Bouma, B. N., Westerman, J., Dekker, N., Gros, P., & Wirtz, K. W. A. (2001). Activation of phosphatidylinositol transfer protein alfa and beta isoforms from inclusion bodies. Biochimica et Biophysica Acta, 1546, 216-225.
Agianian, B., Weik, M., Zaccai, G., Kroon, J., de Kruijff, B., & Gros, P. (2001). Biophysical characterization of the influence of salt on tetrameric SecB. Biophysical Journal, 81, 455-462.
Huizinga, E. G., Schouten, A., Connolly, T. M., Kroon, J., Sixma, J. J., & Gros, P. (2001). The structure of leech anti-plated protein, an inhibitor of haemostasis. Acta crystallographica. Section D, biological crystallography, D 57, 1071-1078.
Brunger, A. T., Adams, P. D., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J-S., Pannu, N. S., Read, R. J., Rice, L. M., & Simonson, T. (2001). The structure determination language of the crystallography anf NMR system. In M. G. Rossmann, & E. Arnolds (Eds.), International Tables for X-ray Crystallography (Volume F) Crystallography of Biological Macromolecules Kluwer Academic Publishers.
Scheres, S. H. W., & Gros, P. (2001). Conditional optimization: a new formalism for protein structure refinement. Acta Crystallographica, D57, 1820-1828.
Professional publications
Agianian, B., Clayton, P., Leonard, J. M., Tucker, P. A., & Gros, P. (Accepted/In press). Crystallization and preliminary X-ray analysis of Drosophila glutathione S-transferase-2. Acta crystallographica. Section D, biological crystallography, D57, 725-727.
2000
Scholarly publications
Weik, M., Ravelli, R. B. G., Kryger, G., McSweeney, S., Raves, M., Harel, M., Gros, P., Silman, I., Kroon, J., & Sussman, J. L. (2000). Specific chemical and structural damage to proteins produced by synchrotron radiation. Proceedings of the National Academy of Sciences of the United States of America, 97, 623-628.
de Groot, P. G., Bouma, B. N., Lutters, B. C. H., Simmelink, M. J. A., Derksen, R. H. W. M., & Gros, P. (2000). Structure-function studies on B2-glycoprotein I. Journal of Autoimmunity, 15, 87-89.
Oomen, C. J.
, Bonvin, A. M. J. J., Haseley, S. R., Hoogerhout, P.
, van Alphen, L., Kroon, J., & Gros, P. (2000).
Rational design of a subtype-specific peptide vaccine against Neisseria meningitidis. In J. P. T. G. Barany G.B. Fields (Ed.),
Peptides for a New Millenium (pp. 702-703). Kluwer Academic Publishers.
https://doi.org/10.1007/0-306-46881-6_280de Groot, P. G., Bouma, B., Lutters, B. C. H., Simmelink, M. J. A., Derksen, R. H. W. M., & Gros, P. (2000). Structure-function studies on beta2-Glycoprotein I. Journal of Autoimmunity, 15, 87-89.
Popularising publications
Kroon, J., & Gros, P. (2000). "Sneak Preview" Stralingsschade. Chemsch2Weekblad 4, 5-5.
1999
Scholarly publications
Bouma, B., de Groot, P. G., van den Elsen, J. M. H., Ravelli, R. B. G., Schouten, A., Simmelink, M. J. A., Derksen, R. H. W. M., Kroon, J., & Gros, P. (1999). Adhesion of human beta2-Glycoprotein I to phospholipids based on its crystal structure. EMBO Journal, 18, 5166-5174.
Dekker, C. G., de Korte-Kool, G., Kroon, J., de Kruijff, B., & Gros, P. (1999). Crystals of acetylated SecB diffract to 2.3 Angstrom resolution. Journal of Structural Biology, 127, 237-242.
van den Elsen, J. M. H., Vandeputte-Rutten, L., Kroon, J., & Gros, P. (1999). Bactericidal antibody recognition of meningococcal PorA by induced fit: comparison of liganded and unliganded Fab structures. Journal of Biological Chemistry, 274, 1495-1501.
Bouma, B. N., de Groot, P. G., van den Elsen, J. M. H., Ravelli, R. B. G., Simmelink, M. J. A., Derksen, R. H. W. M., Kroon, J., & Gros, P. (1999). Adhesion mechanism of human beta 2-glycoprotein I to phospholipids based on its crystal structure. EMBO Journal, 18, 5166-5174.
1998
Scholarly publications
Brünger, A. T., Adams, P. D., Clore, G. M., Delano, W. L.
, Gros, P., Grossekunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., & Warren, G. L. (1998).
Crystallography & NMR system: A new software suite for macromolecular structure determination.
Acta Crystallographica Section D: Biological Crystallography,
54(5), 905-921.
https://doi.org/10.1107/S0907444998003254Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J-S., Kuszweski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., & Warren, G. L. (1998). Crystallography and NMR System: a new software system for macromolecular structure determination. Acta crystallographica. Section D, biological crystallography, D54, 905-921.
Werten, S., Stelzer, G., Goppelt, A., Langen, F. M., Gros, P., Timmers, H. T. M., van der Vliet, P. C., & Meisterernst, M. (1998). Interaction of PC4 with melted DNA inhibits transcription. EMBO Journal, 17, 5103-5111.
1997
Scholarly publications
Brandsen, J., Werten, S., van der Vliet, P. C., Meisterernst, M., Kroon, J., & Gros, P. (1997). C-Terminal domain of transcription cofactor PC4 reveals a dimeric ssDNA binding site. Nature Structural Biology, 4, 900-903.
van den Elsen, J. M. H., Herron, J. N., Hoogerhout, P., Poolman, J. T., Boel, E., Logtenberg, T., Wilting, J., Crommelin, D. J. A., Kroon, J., & Gros, P. (1997). Bactericidal Antibody Recognition of a PorA Epitope of Neisseria meningitidis: Crystal structure of a Fab fragment in complex with a fluorescein-conjugated peptide. Proteins: Structure function and bioinformatics, 29(1), 113-125.
Brandsen, J., Werten, S., van der Vliet, P. C., Meisterernst, M., Kroon, J., & Gros, P. (1997). C-terminal domain of transcription cofactor PC4 reveals dimeric ssDNA binding site. Nature Structural Biology, 4, 900-904.
Sixma, J. J., van Zanten, G. H., Huizinga, E. G., van der Plas, R. M., Verkleij, M., Wu, Y. P., Gros, P., & de Groot, P. G. (1997). Platelet adhesion to collagen: an update. Thrombosis and Haemostasis, 78, 434-438.
Huizinga, E. G., van der Plas, R. M., Kroon, J., Sixma, J. J., & Gros, P. (1997). Crystal structure of the A3 domain of human von Willebrand factor: implications for collagen binding. Structure, 5, 1147-1156.
1996
Scholarly publications
1994
Scholarly publications
Van Gunsteren, W. F., Brunne, R. M.
, Gros, P., Van Schaik, R. C., Schiffer, C. A., & Torda, A. E. (1994).
Accounting for molecular mobility in structure determination based on nuclear magnetic resonance spectroscopic and X-ray diffraction data.
Methods in Enzymology,
239(C), 619-654.
https://doi.org/10.1016/S0076-6879(94)39024-X1993
Scholarly publications
Gros, P., & Van Gunsteren, W. F. (1993).
Crystallographic refinement and structure-factor time-averaging by molecular dynamics in the absence of a physical force field.
Molecular Simulation,
10(2-6), 377-395.
https://doi.org/10.1080/08927029308022174 1992
Scholarly publications
Gros, P., Teplyakov, A. V.
, & Hol, W. G. J. (1992).
Effects of eglin‐c binding to thermitase: Three‐dimensional structure comparison of native thermitase and thermitase eglin‐c complexes.
Proteins: Structure, Function, and Bioinformatics,
12(1), 63-74.
https://doi.org/10.1002/prot.340120108 1991
Scholarly publications
Gros, P., Kalk, K. H., & Hol, W. G. J. (1991). Calcium binding to thermitase: Crystallographic studies of thermitase at 0, 5, and 100 mM calcium. Journal of Biological Chemistry, 266(5), 2953-2961.
van Gunsteren, W. F., Gros, P., Torda, A. E., Berendsen, H. J., & van Schaik, R. C. (1991). On deriving spatial protein structure from NMR or X-ray diffraction data. Ciba Foundation symposium, 161, 150-159.
1990
Scholarly publications
Gros, P., Van Gunsteren, W. F.
, & Hol, W. G. J. (1990).
Inclusion of thermal motion in crystallographic structures by restrained molecular dynamics.
Science,
249(4973), 1149-1152.
https://doi.org/10.1126/science.2396108 1989
Scholarly publications
Gros, P., Fujinaga, M., Dijkstra, B. W., Kalk, K. H.
, & Hol, W. G. J. (1989).
Crystallographic refinement by incorporation of molecular dynamics: thermostable serine protease thermitase complexed with eglin c.
Acta Crystallographica Section B,
45(5), 488-499.
https://doi.org/10.1107/S0108768189006038 Gros, P., Betzel, C., Dauter, Z., Wilson, K. S.
, & Hol, W. G. J. (1989).
Molecular dynamics refinement of a thermitase-eglin-c complex at 1.98 Å resolution and comparison of two crystal forms that differ in calcium content.
Journal of Molecular Biology,
210(2), 347-367.
https://doi.org/10.1016/0022-2836(89)90336-7 1988
Scholarly publications
1987
Scholarly publications
Kelders, H. A., Kalk, K. H.
, Gros, P., & Hol, W. G. J. (1987).
Automated protein crystallization and a new crystal form of a subtilisin:eGlin complex.
Protein Engineering, Design and Selection,
1(4), 301-303.
https://doi.org/10.1093/protein/1.4.3011985
Scholarly publications
BOELENS, R., GROS, P., SCHEEK, RM., VERPOORTE, JA., & KAPTEIN, R. (1985). HYDROGEN-EXCHANGE OF INDIVIDUAL AMIDE PROTONS IN THE ESCHERICHIA-COLI LAC REPRESSOR DNA-BINDING DOMAIN - A NUCLEAR MAGNETIC-RESONANCE STUDY. Journal of Biomolecular Structure and Dynamics, 3(2), 269-280.