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2024

Scholarly publications

Sorokin, D. Y., Merkel, A. Y., Kolganova, T. V., Bale, N. J., & Sinninghe Damsté, J. S. (2024). Natronospira bacteriovora sp. nov., and Natronospira elongata sp. nov., extremely salt-tolerant predatory proteolytic bacteria from soda lakes and proposal to classify the genus Natronospira into Natronospiraceae fam. nov., and Natronospirales ord. nov., within the class Gammaproteobacteria. Systematic and Applied Microbiology, 47(4), Article 126519. https://doi.org/10.1016/j.syapm.2024.126519
https://research-portal.uu.nl/ws/files/239368306/1-s2.0-S072320202400033X-main.pdf

Ding, S., von Meijenfeldt, F. A. B., Bale, N. J., Sinninghe Damsté, J. S., & Villanueva, L. (2024). Production of structurally diverse sphingolipids by anaerobic marine bacteria in the euxinic Black Sea water column. ISME Journal, 18(1), Article wrae153. https://doi.org/10.1093/ismejo/wrae153
https://research-portal.uu.nl/ws/files/238798469/wrae153.pdf

Baxter, A. J., Peterse, F., Verschuren, D., & Sinninghe Damsté, J. S. (2024). Assessment of branched glycerol monoalkyl glycerol tetraether (brGMGT)-based paleothermometry in the 250,000-year sediment record of Lake Chala, equatorial East Africa. Organic Geochemistry, 195, Article 104812. https://doi.org/10.1016/j.orggeochem.2024.104812
https://research-portal.uu.nl/ws/files/234170254/1-s2.0-S0146638024000779-main.pdf

Ding, S., Grossi, V., Hopmans, E. C., Bale, N. J., Laureau, C. C., & Damste, J. S. S. (2024). Nitrogen and sulfur for phosphorus: Lipidome adaptation of anaerobic sulfate- reducing bacteria in phosphorus- deprived conditions. Proceedings of the National Academy of Sciences of the United States of America, 121(24), Article e2400711121. https://doi.org/10.1073/pnas.2400711121
https://research-portal.uu.nl/ws/files/230178569/ding-et-al-2024-nitrogen-and-sulfur-for-phosphorus-lipidome-adaptation-of-anaerobic-sulfate-reducing-bacteria-in.pdf

Baxter, A. J., Peterse, F., Verschuren, D., Maitituerdi, A., Waldmann, N., & Sinninghe Damsté, J. S. (2024). Disentangling influences of climate variability and lake-system evolution on climate proxies derived from isoprenoid and branched glycerol dialkyl glycerol tetraethers (GDGTs): The 250 kyr Lake Chala record. Biogeosciences, 21(11), 2877-2908. https://doi.org/10.5194/bg-21-2877-2024
https://research-portal.uu.nl/ws/files/229365962/bg-21-2877-2024.pdf

Witkowski, C. R., von der Heydt, A. S., Valdes, P. J., van der Meer, M. T. J., Schouten, S., & Sinninghe Damsté, J. S. (2024). Continuous sterane and phytane δ¹³C record reveals a substantial pCO₂ decline since the mid-Miocene. Nature Communications, 15(1), Article 5192. https://doi.org/10.1038/s41467-024-47676-9
https://research-portal.uu.nl/ws/files/229363086/s41467-024-47676-9.pdf

Hopmans, E. C., Grossi, V., Sahonero-Canavesi, D. X., Bale, N. J., Cravo-Laureau, C., & Damste, J. S. S. (2024). Mono- to tetra-alkyl ether cardiolipins in a mesophilic, sulfate-reducing bacterium identified by UHPLC-HRMSn: a novel class of membrane lipids. Frontiers in Microbiology, 15, Article 1404328. https://doi.org/10.3389/fmicb.2024.1404328
https://research-portal.uu.nl/ws/files/228554666/fmicb-15-1404328.pdf

Yadav, S., Koenen, M., Bale, N. J., Reitsma, W., Engelmann, J. C., Stefanova, K., Damsté, J. S. S., & Villanueva, L. (2024). Organic matter degradation in the deep, sulfidic waters of the Black Sea: insights into the ecophysiology of novel anaerobic bacteria. Microbiome, 12(1), Article 98. https://doi.org/10.1186/s40168-024-01816-x
https://research-portal.uu.nl/ws/files/226643084/s40168-024-01816-x.pdf

Ding, S., Hamm, J. N., Bale, N. J., Sinninghe Damsté, J. S., & Spang, A. (2024). Selective lipid recruitment by an archaeal DPANN symbiont from its host. Nature Communications, 15(1), Article 3405. https://doi.org/10.1038/s41467-024-47750-2
https://dspace.library.uu.nl/bitstream/handle/1874/451699/s41467-024-47750-2.pdf?sequence=1

van Kemenade, Z. R., Erdem, Z., Hopmans, E. C., Sinninghe Damsté, J. S., & Rush, D. (2024). Loss of nitrogen via anaerobic ammonium oxidation (anammox) in the California Current system during the late Quaternary. Biogeosciences, 21(6), 1517-1532. https://doi.org/10.5194/bg-21-1517-2024
https://dspace.library.uu.nl/bitstream/handle/1874/438210/bg-21-1517-2024.pdf?sequence=1

Varma, D., Hopmans, E. C., van Kemenade, Z. R., Kusch, S., Berg, S., Bale, N. J., Sangiorgi, F., Reichart, G. J., Sinninghe Damsté, J. S., & Schouten, S. (2024). Evaluating isoprenoidal hydroxylated GDGT-based temperature proxies in surface sediments from the global ocean. Geochimica et Cosmochimica Acta, 370, 113-127. https://doi.org/10.1016/j.gca.2023.12.019
https://dspace.library.uu.nl/bitstream/handle/1874/437396/1-s2.0-S0016703723006403-main.pdf?sequence=1

Moros, M., Kotilainen, A. T., Snowball, I., Neumann, T., Perner, K., Meier, H. E. M., Papenmeier, S., Kolling, H., Leipe, T., Sinninghe Damste, J. S., & Schneider, R. (2024). Giant saltwater inflow in AD 1951 triggered Baltic Sea hypoxia. Boreas, 53(2), 125-138. https://doi.org/10.1111/bor.12643
https://dspace.library.uu.nl/bitstream/handle/1874/437894/Boreas_-_2023_-_Moros_-_Giant_saltwater_inflow_in_AD_1951_triggered_Baltic_Sea_hypoxia.pdf?sequence=1

2023

Scholarly publications

Kotilainen, A., Moros, M., Snowball, I., Neumann, T., Perner, K., Meier, H. E. M., Sinninghe Damsté, J., & Schneider, R. (2023). Winter-time deep-water formation / convection in the Baltic Sea – affecting seabed dynamics and ventilation changes over the past. Abstract from EGU General Assembly 2023, Vienna, Austria. https://doi.org/10.5194/egusphere-egu23-9566

Pérez Gallego, R., Bale, N. J., Sinninghe Damste, J. S., & Villanueva, L. (2023). Developing a genetic approach to target cyanobacterial producers of heterocyte glycolipids in the environment. Frontiers in Microbiology, 14, 1-14. Article 1257040. https://doi.org/10.3389/fmicb.2023.1257040
https://dspace.library.uu.nl/bitstream/handle/1874/434694/fmicb-14-1257040.pdf?sequence=1

Tamby, A., Sinninghe Damsté, J. S., & Villanueva, L. (2023). Microbial membrane lipid adaptations to high hydrostatic pressure in the marine environment. Frontiers in Molecular Biosciences, 9, 1-11. Article 1058381. https://doi.org/10.3389/fmolb.2022.1058381
https://dspace.library.uu.nl/bitstream/handle/1874/434693/fmolb-09-1058381.pdf?sequence=1

Sinninghe Damsté, J. S., Rijpstra, W. I. C., Huber, K. J., Albuquerque, L., Egas, C., & Bale, N. J. (2023). Dominance of mixed ether/ester, intact polar membrane lipids in five species of the order Rubrobacterales: Another group of bacteria not obeying the “lipid divide”. Systematic and Applied Microbiology, 46(2), 1-12. Article 126404. https://doi.org/10.1016/j.syapm.2023.126404
https://dspace.library.uu.nl/bitstream/handle/1874/434692/1-s2.0-S0723202023000139-main.pdf?sequence=1

Toucanne, S., Rodrigues, T., Menot, G., Soulet, G., Cheron, S., Billy, I., Eynaud, F., Antoine, P., Sinninghe Damste, J. S., Bard, E., & Sanchez Goñi, M.-F. (2023). Marine Isotope Stage 4 (71–57 ka) on the Western European margin: Insights to the drainage and dynamics of the Western European Ice Sheet. Global and Planetary Change, 229, 1-17. Article 104221. https://doi.org/10.1016/j.gloplacha.2023.104221
https://dspace.library.uu.nl/bitstream/handle/1874/434691/1-s2.0-S0921818123001947-main.pdf?sequence=1

van Kemenade, Z. R., Cutmore, A., Hennekam, R., Hopmans, E. C., van der Meer, M. T. J., Mojtahid, M., Jorissen, F. J., Bale, N. J., Reichart, G.-J., Sinninghe Damsté, J. S., & Rush, D. (2023). Marine nitrogen cycling dynamics under altering redox conditions: Insights from deposition of sapropels S1 and the ambiguous S2 in the Eastern Mediterranean Sea. Geochimica et Cosmochimica Acta, 354, 197-210. https://doi.org/10.1016/j.gca.2023.06.018
https://dspace.library.uu.nl/bitstream/handle/1874/434686/1-s2.0-S0016703723002922-main.pdf?sequence=1

Baxter, A. J., Verschuren, D., Peterse, F., Miralles, D. G., Martin-Jones, C. M., Maitituerdi, A., Van der Meeren, T., Van Daele, M., Lane, C. S., Haug, G. H., Olago, D., & Sinninghe Damsté, J. S. (2023). Reversed Holocene temperature–moisture relationship in the Horn of Africa. Nature, 620(7973), 336-343. https://doi.org/10.1038/s41586-023-06272-5
https://dspace.library.uu.nl/bitstream/handle/1874/430263/s41586-023-06272-5.pdf?sequence=1

Yedema, Y. W., Sangiorgi, F., Sluijs, A., Damsté, J. S. S., & Peterse, F. (2023). The dispersal of fluvially discharged and marine, shelf-produced particulate organic matter in the northern Gulf of Mexico. Biogeosciences, 20(3), 663-686. https://doi.org/10.5194/bg-20-663-2023
https://dspace.library.uu.nl/bitstream/handle/1874/427166/bg_20_663_2023.pdf?sequence=1

2022

Scholarly publications

Ding, S., Henkel, J. V., Hopmans, E. C., Bale, N. J., Koenen, M., Villanueva, L., & Sinninghe Damsté, J. S. (2022). Changes in the membrane lipid composition of a Sulfurimonas species depend on the electron acceptor used for sulfur oxidation. ISME communications, 2(1), Article 121. https://doi.org/10.1038/s43705-022-00207-3
https://dspace.library.uu.nl/bitstream/handle/1874/437141/43705_2022_article_207.pdf?sequence=1

Sorokin, D. Y., Elcheninov, A. G., Khizhniak, T. V., Koenen, M., Bale, N. J., Sinninghe Damsté, J. S., & Kublanov, I. V. (2022). Natronocalculus amylovorans gen. nov., sp. nov., and Natranaeroarchaeum aerophilus sp. nov., dominant culturable amylolytic natronoarchaea from hypersaline soda lakes in southwestern Siberia. Systematic and Applied Microbiology, 45(4), Article 126336. https://doi.org/10.1016/j.syapm.2022.126336

Sinninghe Damsté, J. S., Warden, L. A., Berg, C., Jürgens, K., & Moros, M. (2022). Evaluation of the distributions of hydroxylated glycerol dibiphytanyl glycerol tetraethers (GDGTs) in Holocene Baltic Sea sediments for reconstruction of sea surface temperature: The effect of changing salinity. Climate of the Past, 18(10), 2271-2288. https://doi.org/10.5194/cp-18-2271-2022
https://dspace.library.uu.nl/bitstream/handle/1874/425564/cp_18_2271_2022.pdf?sequence=1

Sahonero-Canavesi, D. X., Siliakus, M. F., Asbun, A. A., Koenen, M., Von Meijenfeldt, F. A. B., Boeren, S., Bale, N. J., Engelman, J. C., Fiege, K., van Schijndel, L. S., Sinninghe Damsté, J. S., & Villanueva, L. (2022). Disentangling the lipid divide: Identification of key enzymes for the biosynthesis of membrane-spanning and ether lipids in Bacteria. Science advances, 8(50), 1-15. Article eabq8652. https://doi.org/10.1126/sciadv.abq8652
https://dspace.library.uu.nl/bitstream/handle/1874/425563/sciadv.abq8652.pdf?sequence=1

Belova, S. E., Ravin, N. V., Pankratov, T. A., Rakitin, A. L., Ivanova, A. A., Beletsky, A. V., Mardanov, A. V., Sinninghe Damsté, J. S., & Dedysh, S. N. (2022). Corrigendum: Hydrolytic Capabilities as a Key to Environmental Success: Chitinolytic and Cellulolytic Acidobacteria From Acidic Sub-arctic Soils and Boreal Peatlands (Front. Microbiol., (2018), 9, (2775), 10.3389/fmicb.2018.02775). Frontiers in Microbiology, 13, 1-2. Article 856396. https://doi.org/10.3389/fmicb.2022.856396
https://dspace.library.uu.nl/bitstream/handle/1874/425562/fmicb_13_856396.pdf?sequence=1

Suominen, S., Gomez-Saez, G. V., Dittmar, T., Sinninghe Damsté, J. S., & Villanueva, L. (2022). Interplay between microbial community composition and chemodiversity of dissolved organic matter throughout the Black Sea water column redox gradient. Limnology and Oceanography, 67(2), 329-347. https://doi.org/10.1002/lno.11995
https://dspace.library.uu.nl/bitstream/handle/1874/425848/Limnology_Oceanography_2021_Suominen_Interplay_between_microbial_community_composition_and_chemodiversity_of.pdf?sequence=1

Sinninghe Damsté, J. S., Weber, Y., Zopfi, J., Lehmann, M. F., & Niemann, H. (2022). Distributions and sources of isoprenoidal GDGTs in Lake Lugano and other central European (peri-)alpine lakes: Lessons for their use as paleotemperature proxies. Quaternary Science Reviews, 277, 1-22. Article 107352. https://doi.org/10.1016/j.quascirev.2021.107352
https://dspace.library.uu.nl/bitstream/handle/1874/425480/1_s2.0_S027737912100559X_main.pdf?sequence=1

Hoorn, C., Kukla, T., Bogotá-Angel, G., van Soelen, E., González-Arango, C., Wesselingh, F. P., Vonhof, H., Val, P., Morcote-Rios, G., Roddaz, M., Dantas, E. L., Santos, R. V., Sinninghe Damsté, J. S., Kim, J.-H., & Morley, R. J. (2022). Cyclic sediment deposition by orbital forcing in the Miocene wetland of western Amazonia? New insights from a multidisciplinary approach. Global and Planetary Change, 210, 1-26. Article 103717. https://doi.org/10.1016/j.gloplacha.2021.103717
https://dspace.library.uu.nl/bitstream/handle/1874/425479/1_s2.0_S0921818121003027_main.pdf?sequence=1

Sanchez-Andrea, I., van der Graaf, C. M., Hornung, B., Bale, N. J., Jarzembowska, M., Sousa, D. Z., Rijpstra, W. I. C., Sinninghe Damste, J. S., & Stams, A. J. M. (2022). Acetate Degradation at Low pH by the Moderately Acidophilic Sulfate Reducer Acididesulfobacillus acetoxydans gen. nov. sp. nov. Frontiers in Microbiology, 13, 1-18. Article 816605. https://doi.org/10.3389/fmicb.2022.816605
https://dspace.library.uu.nl/bitstream/handle/1874/425478/fmicb_13_816605.pdf?sequence=1

Rodrigo-Gámiz, M., García-Alix, A., Jiménez-Moreno, G., Ramos-Román, M. J., Camuera, J., Toney, J. L., Sachse, D., Anderson, R. S., & Sinninghe Damsté, J. S. (2022). Paleoclimate reconstruction of the last 36 kyr based on branched glycerol dialkyl glycerol tetraethers in the Padul palaeolake record (Sierra Nevada, southern Iberian Peninsula). Quaternary Science Reviews, 281, 1-13. Article 107434. https://doi.org/10.1016/j.quascirev.2022.107434
https://dspace.library.uu.nl/bitstream/handle/1874/425477/1_s2.0_S0277379122000658_main.pdf?sequence=1

Kulichevskaya, I. S., Ivanova, A. A., Suzina, N. E., Sinninghe Damsté, J. S., & Dedysh, S. N. (2022). Anatilimnocola floriformis sp. nov., a novel member of the family Pirellulaceae from a boreal lake, and emended description of the genus Anatilimnocola. Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology, 115(10), 1253-1264. https://doi.org/10.1007/s10482-022-01769-x
https://dspace.library.uu.nl/bitstream/handle/1874/425476/s10482_022_01769_x.pdf?sequence=1

Sorokin, D. Y., Yakimov, M., Messina, E., Merkel, A. Y., Koenen, M., Bale, N. J., & Sinninghe Damsté, J. S. (2022). Natranaeroarchaeum sulfidigenes gen. nov., sp. nov., carbohydrate-utilizing sulfur-respiring haloarchaeon from hypersaline soda lakes, a member of a new family Natronoarchaeaceae fam. nov. in the order Halobacteriales. Systematic and Applied Microbiology, 45(6), 1-9. Article 126356. https://doi.org/10.1016/j.syapm.2022.126356
https://dspace.library.uu.nl/bitstream/handle/1874/425475/1_s2.0_S0723202022000637_main.pdf?sequence=1

Kemenade, Z. R. V., Villanueva, L., Hopmans, E. C., Kraal, P., Witte, H. J., Sinninghe Damsté, J. S., & Rush, D. (2022). Bacteriohopanetetrol-x: constraining its application as a lipid biomarker for marine anammox using the water column oxygen gradient of the Benguela upwelling system. Biogeosciences, 19(1), 201-221. https://doi.org/10.5194/bg-19-201-2022
https://dspace.library.uu.nl/bitstream/handle/1874/419297/bg_19_201_2022.pdf?sequence=1

Sahonero-Canavesi, D. X., Villanueva, L., Bale, N. J., Bosviel, J., Koenen, M., Hopmans, E. C., & Sinninghe Damsté, J. S. (2022). Changes in the distribution of membrane lipids during growth of Thermotoga maritima at different temperatures: Indications for the potential mechanism of biosynthesis of ether-bound diabolic acid (membrane-spanning) lipids. Applied and Environmental Microbiology, 88(2), 1-17. Article e01763-21. https://doi.org/10.1128/AEM.01763-21
https://dspace.library.uu.nl/bitstream/handle/1874/419003/AEM.01763_21.pdf?sequence=1

2021

Scholarly publications

Suominen, S., van Vliet, D. M., Sánchez-Andrea, I., van der Meer, M. T. J., Sinninghe Damsté, J. S., & Villanueva, L. (2021). Organic Matter Type Defines the Composition of Active Microbial Communities Originating From Anoxic Baltic Sea Sediments. Frontiers in Microbiology, 12, Article 628301. https://doi.org/10.3389/fmicb.2021.628301
https://research-portal.uu.nl/ws/files/233450629/fmicb-12-628301.pdf

Hopmans, E. C., Smit, N. T., Schwartz-Narbonne, R., Sinninghe Damsté, J. S., & Rush, D. (2021). Analysis of non-derivatized bacteriohopanepolyols using UHPLC-HRMS reveals great structural diversity in environmental lipid assemblages. Organic Geochemistry, 160, Article 104285. https://doi.org/10.1016/j.orggeochem.2021.104285
https://research-portal.uu.nl/ws/files/233981746/1-s2.0-S0146638021001066-main.pdf

Sorokin, D. Y., Yakimov, M. M., Messina, E., Merkel, A. Y., Koenen, M., Bale, N. J., & Sinninghe Damsté, J. S. (2021). Halapricum desulfuricans sp. nov., carbohydrate-utilizing, sulfur-respiring haloarchaea from hypersaline lakes. Systematic and Applied Microbiology, 44(6), 1-7. Article 126249. https://doi.org/10.1016/j.syapm.2021.126249
https://research-portal.uu.nl/ws/files/233984199/1-s2.0-S0723202021000722-main.pdf

Yadav, S., Koenen, M., Bale, N., Sinninghe Damsté, J. S., & Villanueva, L. (2021). The physiology and metabolic properties of a novel, low-abundance Psychrilyobacter species isolated from the anoxic Black Sea shed light on its ecological role. Environmental Microbiology Reports, 13(6), 899-910. https://doi.org/10.1111/1758-2229.13012
https://dspace.library.uu.nl/bitstream/handle/1874/434696/Environ_Microbiol_Rep_-_2021_-_Yadav_-_The_physiology_and_metabolic_properties_of_a_novel_low_abundance_Psychrilyobacter.pdf?sequence=1

Fletcher, T., Eble, C., Sinninghe Damsté, J. S., Brown, K. J., Rybczynski, N., Gosse, J., Liu, Z., & Ballantyne, A. (2021). Widespread wildfire across the Pliocene Canadian Arctic Archipelago. Palaeogeography, Palaeoclimatology, Palaeoecology, 584, 1-8. Article 110653. https://doi.org/10.1016/j.palaeo.2021.110653
https://research-portal.uu.nl/ws/files/233544836/1-s2.0-S0031018221004387-main.pdf

Lattaud, J., Balzano, S., van der Meer, M. T. J., Villanueva, L., Hopmans, E. C., Sinninghe Damsté, J. S., & Schouten, S. (2021). Sources and seasonality of long-chain diols in a temperate lake (Lake Geneva). Organic Geochemistry, 156, Article 104223. https://doi.org/10.1016/j.orggeochem.2021.104223
https://research-portal.uu.nl/ws/files/233305271/1-s2.0-S0146638021000449-main.pdf

Sobrinho, R. D. L., Bernardes, M. C., de Rezende, C. E., Kim, J.-H., Schouten, S., & Sinninghe Damsté, J. S. (2021). A multiproxy approach to characterize the sedimentation of organic carbon in the Amazon continental shelf. Marine Chemistry, 232, Article 103961. https://doi.org/10.1016/j.marchem.2021.103961
https://research-portal.uu.nl/ws/files/233996167/1-s2.0-S0304420321000463-main.pdf

Ding, S., Bale, N. J., Hopmans, E. C., Villanueva, L., Arts, M. G. I., Schouten, S., & Sinninghe Damsté, J. S. (2021). Lipidomics of Environmental Microbial Communities. II: Characterization Using Molecular Networking and Information Theory. Frontiers in Microbiology, 12, Article 659315. https://doi.org/10.3389/fmicb.2021.659315
https://research-portal.uu.nl/ws/files/233450714/fmicb-12-659315.pdf

Bale, N. J., Ding, S., Hopmans, E. C., Arts, M. G. I., Villanueva, L., Boschman, C., Haas, A. F., Schouten, S., & Sinninghe Damsté, J. S. (2021). Lipidomics of Environmental Microbial Communities. I: Visualization of Component Distributions Using Untargeted Analysis of High-Resolution Mass Spectrometry Data. Frontiers in Microbiology, 12, Article 659502. https://doi.org/10.3389/fmicb.2021.659302
https://research-portal.uu.nl/ws/files/233450744/fmicb-12-659302.pdf

Holzheimer, M., Sinninghe Damsté, J. S., Schouten, S., Havenith, R. W. A., Cunha, A. V., & Minnaard, A. J. (2021). Total Synthesis of the Alleged Structure of Crenarchaeol Enables Structure Revision**. Angewandte Chemie - International Edition, 60(32), 17504-17513. https://doi.org/10.1002/anie.202105384
https://research-portal.uu.nl/ws/files/233305674/Angew_Chem_Int_Ed_-_2021_-_Holzheimer_-_Total_Synthesis_of_the_Alleged_Structure_of_Crenarchaeol_Enables_Structure_Revision.pdf

Morcillo-Montalba, L., Rodrigo-Gamiz, M., Martinez-Ruiz, F., Ortega-Huertas, M., Schouten, S., & Damste, J. S. S. (2021). Rapid Climate Changes in the Westernmost Mediterranean (Alboran Sea) Over the Last 35 kyr: New Insights From Four Lipid Paleothermometers (UK'37, TEXH86, RI-OH', and LDI). Paleoceanography and Paleoclimatology, 36(12), Article e2020PA004171. https://doi.org/10.1029/2020PA004171
https://dspace.library.uu.nl/bitstream/handle/1874/434682/Paleoceanog_and_Paleoclimatol_-_2021_-_Morcillo_Montalb_-_Rapid_Climate_Changes_in_the_Westernmost_Mediterranean_Alboran.pdf?sequence=1

Erdem, Z., Lattaud, J., van Erk, M. R., Mezger, E., Reichart, G. J., Lückge, A., Damsté, J. S. S., & Schouten, S. (2021). Applicability of the Long Chain Diol Index (LDI) as a Sea Surface Temperature Proxy in the Arabian Sea. Paleoceanography and Paleoclimatology, 36(12), 1-15. Article e2021PA004255. https://doi.org/10.1029/2021PA004255
https://dspace.library.uu.nl/bitstream/handle/1874/419311/Paleoceanog_and_Paleoclimatol_2021_Erdem_Applicability_of_the_Long_Chain_Diol_Index_LDI_as_a_Sea_Surface.pdf?sequence=1

Ahn, A.-C., Jongepier, E., Schuurmans, J. M., Rijpstra, W. I. C., Damste, J. S. S., Galinski, E. A., Roman, P., Sorokin, D., & Muyzer, G. (2021). Molecular and Physiological Adaptations to Low Temperature in Thioalkalivibrio Strains Isolated from Soda Lakes with Different Temperature Regimes. mSystems, 6(2), Article e01202-20. https://doi.org/10.1128/MSYSTEMS.01202-20
https://dspace.library.uu.nl/bitstream/handle/1874/419004/mSystems.01202_20.pdf?sequence=1

Baxter, A. J., van Bree, L. G. J., Peterse, F., Hopmans, E. C., Villanueva, L., Verschuren, D., & Sinninghe Damsté, J. S. (2021). Seasonal and multi-annual variation in the abundance of isoprenoid GDGT membrane lipids and their producers in the water column of a meromictic equatorial crater lake (Lake Chala, East Africa). Quaternary Science Reviews, 273, 1-21. Article 107263. https://doi.org/10.1016/j.quascirev.2021.107263
https://dspace.library.uu.nl/bitstream/handle/1874/413674/1_s2.0_S0277379121004704_main.pdf?sequence=1

Baxter, A. J., Peterse, F., Verschuren, D., & Sinninghe Damsté, J. S. (2021). Anoxic in situ production of bacterial GMGTs in the water column and surficial bottom sediments of a meromictic tropical crater lake: Implications for lake paleothermometry. Geochimica et Cosmochimica Acta, 306, 171-188. https://doi.org/10.1016/j.gca.2021.05.015
https://dspace.library.uu.nl/bitstream/handle/1874/412520/1_s2.0_S0016703721002866_main.pdf?sequence=1

Grinsven, S., Sinninghe Damsté, J. S., Harrison, J., Polerecky, L., & Villanueva, L. (2021). Nitrate promotes the transfer of methane‐derived carbon from the methanotroph Methylobacter sp. to the methylotroph Methylotenera sp. in eutrophic lake water. Limnology and Oceanography, 66(3), 878-891. https://doi.org/10.1002/lno.11648
https://dspace.library.uu.nl/bitstream/handle/1874/411631/lno.11648.pdf?sequence=1

Suominen, S., Doorenspleet, K., Sinninghe Damsté, J. S., & Villanueva, L. (2021). Microbial community development on model particles in the deep sulfidic waters of the Black Sea. Environmental Microbiology, 23(6), 2729-2746. https://doi.org/10.1111/1462-2920.15024
https://dspace.library.uu.nl/bitstream/handle/1874/411629/1462_2920.15024.pdf?sequence=1

Sorokin, D. Y., Diender, M., Merkel, A. Y., Koenen, M., Bale, N. J., Pabst, M., Sinninghe Damsté, J. S., & Sousa, D. Z. (2021). Natranaerofaba carboxydovora gen. nov., sp. nov., an extremely haloalkaliphilic CO‐utilizing acetogen from a hypersaline soda lake representing a novel deep phylogenetic lineage in the class ‘Natranaerobiia’ . Environmental Microbiology, 23(7), 3460-3476. https://doi.org/10.1111/1462-2920.15241
https://dspace.library.uu.nl/bitstream/handle/1874/411628/1462_2920.15241.pdf?sequence=1

Suominen, S., Dombrowski, N., Sinninghe Damsté, J. S., & Villanueva, L. (2021). A diverse uncultivated microbial community is responsible for organic matter degradation in the Black Sea sulphidic zone. Environmental Microbiology, 23(6), 2709-2728. https://doi.org/10.1111/1462-2920.14902
https://dspace.library.uu.nl/bitstream/handle/1874/411627/1462_2920.14902.pdf?sequence=1

Dearing Crampton-flood, E., van der Weijst, C. M. H., Van Der Molen, G., Bouquet, M., Yedema, Y., Donders, T. H., Sangiorgi, F., Sluijs, A., Sinninghe Damsté, J. S., & Peterse, F. (2021). Identifying marine and freshwater overprints on soil-derived branched GDGT temperature signals in Pliocene Mississippi and Amazon River fan sediments. Organic Geochemistry, 154, Article 104200. https://doi.org/10.1016/j.orggeochem.2021.104200
https://dspace.library.uu.nl/bitstream/handle/1874/411626/1_s2.0_S0146638021000218_main.pdf?sequence=1

Smit, N. T., Villanueva, L., Rush, D., Grassa, F., Witkowski, C. R., Holzheimer, M., Minnaard, A. J., Sinninghe Damsté, J. S., & Schouten, S. (2021). Novel hydrocarbon-utilizing soil mycobacteria synthesize unique mycocerosic acids at a Sicilian everlasting fire. Biogeosciences, 18(4), 1463-1479. https://doi.org/10.5194/bg-18-1463-2021
https://dspace.library.uu.nl/bitstream/handle/1874/411625/bg_18_1463_2021.pdf?sequence=1

van Vliet, D. M., von Meijenfeldt, F. A. B., Dutilh, B. E., Villanueva, L., Sinninghe Damsté, J. S., Stams, A. J. M., & Sánchez-Andrea, I. (2021). The bacterial sulfur cycle in expanding dysoxic and euxinic marine waters. Environmental Microbiology, 23(6), 2834-2857. https://doi.org/10.1111/1462-2920.15265
https://dspace.library.uu.nl/bitstream/handle/1874/409803/1462_2920.15265.pdf?sequence=1

Villanueva, L., von Meijenfeldt, F. A. B., Westbye, A. B., Yadav, S., Hopmans, E. C., Dutilh, B. E., & Damsté, J. S. S. (2021). Bridging the membrane lipid divide: bacteria of the FCB group superphylum have the potential to synthesize archaeal ether lipids. ISME Journal, 15(1), 168-182. https://doi.org/10.1038/s41396-020-00772-2
https://dspace.library.uu.nl/bitstream/handle/1874/409095/s41396_020_00772_2.pdf?sequence=1

2020

Scholarly publications

van Grinsven, S., Sinninghe Damste, J. S., Asbun, A. A., Engelmann, J. C., Harrison, J., & Villanueva, L. (2020). Methane oxidation in anoxic lake water stimulated by nitrate and sulfate addition. Environmental Microbiology, 22(2), 766-782. https://doi.org/10.1111/1462-2920.14886
https://dspace.library.uu.nl/bitstream/handle/1874/437231/Environmental_Microbiology_-_2019_-_Grinsven_-_Methane_oxidation_in_anoxic_lake_water_stimulated_by_nitrate_and_sulfate.pdf?sequence=1

Saidi-Mehrabad, A., Kits, D. K., Kim, J.-J., Tamas, I., Schumann, P., Khadka, R., Strilets, T., Smirnova, A. V., Rijpstra, W. I. C., Sinninghe Damsté, J. S., & Dunfield, P. F. (2020). Methylicorpusculum oleiharenae gen. Nov., sp. nov., an aerobic methanotroph isolated from an oil sands tailings pond. International Journal of Systematic and Evolutionary Microbiology, 70(4), 2499-2508. https://doi.org/10.1099/ijsem.0.004064
https://research-portal.uu.nl/ws/files/235327385/2499_ijsem004064.pdf

Kulichevskaya, I. S., Naumoff, D. G., Miroshnikov, K. K., Ivanova, A. A., Philippov, D. A., Hakobyan, A., Rijpstra, W. I. C., Sinninghe Damsté, J. S., Liesack, W., & Dedysh, S. N. (2020). Limnoglobus roseus gen. nov., sp. nov., a novel freshwater planctomycete with a giant genome from the family gemmataceae. International Journal of Systematic and Evolutionary Microbiology, 70(2), 1240-1249. https://doi.org/10.1099/ijsem.0.003904
https://research-portal.uu.nl/ws/files/235529278/1240_ijsem003904.pdf

Dedysh, S. N., Kulichevskaya, I. S., Beletsky, A. V., Ivanova, A. A., Rijpstra, W. I. C., Sinninghe Damsté, J. S., Mardanov, A. V., & Ravin, N. V. (2020). Lacipirellula parvula gen. nov., sp. nov., representing a lineage of planctomycetes widespread in low-oxygen habitats, description of the family Lacipirellulaceae fam. nov. and proposal of the orders Pirellulales ord. nov., Gemmatales ord. nov. and Isosphaerales ord. nov. Systematic and Applied Microbiology, 43(1), Article 126050. https://doi.org/10.1016/j.syapm.2019.126050
https://research-portal.uu.nl/ws/files/234736940/1-s2.0-S0723202019303455-main.pdf

Peng, P., Goris, T., Lu, Y., Nijsse, B., Burrichter, A., Schleheck, D., Koehorst, J. J., Liu, J., Sipkema, D., Damste, J. S. S., Stams, A. J. M., Haeggblom, M. M., Smidt, H., & Atashgahi, S. (2020). Organohalide-respiring Desulfoluna species isolated from marine environments. ISME Journal, 14(3), 815-827. https://doi.org/10.1038/s41396-019-0573-y
https://research-portal.uu.nl/ws/files/234736396/41396_2019_article_573.pdf

Ozuolmez, D., Moore, E. K., Hopmans, E. C., Sinninghe Damsté, J. S., Stams, A. J. M., & Plugge, C. M. (2020). Butyrate conversion by sulfate-reducing and methanogenic communities from anoxic sediments of Aarhus Bay, Denmark. Microorganisms, 8(4), Article 606. https://doi.org/10.3390/microorganisms8040606
https://research-portal.uu.nl/ws/files/235325022/microorganisms-08-00606-v2.pdf

Schwartz-Narbonne, R., Schaeffer, P., Hopmans, E. C., Schenesse, M., Charlton, E. A., Jones, D. M., Sinninghe Damsté, J. S., Farhan Ul Haque, M., Jetten, M. S. M., Lengger, S. K., Murrell, J. C., Normand, P., Nuijten, G. H. L., Talbot, H. M., & Rush, D. (2020). A unique bacteriohopanetetrol stereoisomer of marine anammox. Organic Geochemistry, 143, Article 103994. https://doi.org/10.1016/j.orggeochem.2020.103994
https://research-portal.uu.nl/ws/files/235428423/1-s2.0-S0146638020300292-main.pdf

van Grinsven, S., Sinninghe Damsté, J. S., Harrison, J., & Villanueva, L. (2020). Impact of Electron Acceptor Availability on Methane-Influenced Microorganisms in an Enrichment Culture Obtained From a Stratified Lake. Frontiers in Microbiology, 11, Article 00715. https://doi.org/10.3389/fmicb.2020.00715
https://research-portal.uu.nl/ws/files/234736891/fmicb-11-00715.pdf

Moros, M., Kotilainen, A. T., Snowball, I., Neumann, T., Perner, K., Meier, H. E. M., Leipe, T., Zillén, L., Sinninghe Damsté, J. S., & Schneider, R. (2020). Is ‘deep-water formation’ in the Baltic Sea a key to understanding seabed dynamics and ventilation changes over the past 7,000 years? Quaternary International, 550, 55-65. https://doi.org/10.1016/j.quaint.2020.03.031
https://research-portal.uu.nl/ws/files/234900644/1-s2.0-S1040618220301257-main.pdf

Kulichevskaya, I. S., Ivanova, A. A., Naumoff, D. G., Beletsky, A., Rijpstra, W. I. C., Damste, J. S. S., Mardanov, A., Ravin, N., & Dedysh, S. N. (2020). Frigoriglobus tundricola gen. nov., sp. nov., a psychrotolerant cellulolytic planctomycete of the family Gemmataceae from a littoral tundra wetland. Systematic and Applied Microbiology, 43(5), Article 126129. https://doi.org/10.1016/j.syapm.2020.126129
https://research-portal.uu.nl/ws/files/234735963/1-s2.0-S0723202020300849-main.pdf

van Grinsven, S., Sinninghe Damsté, J. S., & Villanueva, L. (2020). Assessing the effect of humic substances and fe(Iii) as potential electron acceptors for anaerobic methane oxidation in a marine anoxic system. Microorganisms, 8(9), Article 1288. https://doi.org/10.3390/microorganisms8091288
https://research-portal.uu.nl/ws/files/234736846/microorganisms-08-01288.pdf

Scasso, R. A., Prámparo, M. B., Vellekoop, J., Franzosi, C., Castro, L. N., & Sinninghe Damsté, J. S. (2020). A high-resolution record of environmental changes from a Cretaceous-Paleogene section of Seymour Island, Antarctica. Palaeogeography, Palaeoclimatology, Palaeoecology, 555, Article 109844. https://doi.org/10.1016/j.palaeo.2020.109844
https://research-portal.uu.nl/ws/files/235427218/1-s2.0-S0031018220302893-main.pdf

Yadav, S., Villanueva, L., Bale, N., Koenen, M., Hopmans, E. C., & Damsté, J. S. S. (2020). Physiological, chemotaxonomic and genomic characterization of two novel piezotolerant bacteria of the family Marinifilaceae isolated from sulfidic waters of the Black Sea. Systematic and Applied Microbiology, 43(5), Article 126122. https://doi.org/10.1016/j.syapm.2020.126122
https://dspace.library.uu.nl/bitstream/handle/1874/411871/1_s2.0_S0723202020300771_main.pdf?sequence=1

Besseling, M. A., Hopmans, E. C., Bale, N. J., Schouten, S., Damsté, J. S. S., & Villanueva, L. (2020). The absence of intact polar lipid-derived GDGTs in marine waters dominated by Marine Group II: Implications for lipid biosynthesis in Archaea. Scientific Reports, 10(1), Article 294. https://doi.org/10.1038/s41598-019-57035-0
https://dspace.library.uu.nl/bitstream/handle/1874/410916/s41598_019_57035_0.pdf?sequence=1

de Bar, M. W., Weiss, G., Yildiz, C., Rampen, S. W., Lattaud, J., Bale, N. J., Mienis, F., Brummer, G. J. A., Schulz, H., Rush, D., Kim, J. H., Donner, B., Knies, J., Lückge, A., Stuut, J. B. W., Sinninghe Damsté, J. S., & Schouten, S. (2020). Global temperature calibration of the Long chain Diol Index in marine surface sediments. Organic Geochemistry, 142, Article 103983. https://doi.org/10.1016/j.orggeochem.2020.103983
https://dspace.library.uu.nl/bitstream/handle/1874/410915/1_s2.0_S0146638020300188_main.pdf?sequence=1

Bale, N. J., Koenen, M., Yadav, S., Hopmans, E. C., Villanueva, L., Sinninghe Damsté, J. S., & Schouten, S. (2020). Diagnostic amide products of amino lipids detected in the microaerophilic bacteria Lutibacter during routine fatty acid analysis using gas chromatography. Organic Geochemistry, 144, Article 104027. https://doi.org/10.1016/j.orggeochem.2020.104027
https://dspace.library.uu.nl/bitstream/handle/1874/410914/1_s2.0_S0146638020300620_main.pdf?sequence=1

Witkowski, C. R., van der Meer, M. T. J., Smit, N. T., Sinninghe Damsté, J. S., & Schouten, S. (2020). Testing algal-based pCO₂ proxies at a modern CO₂ seep (Vulcano, Italy). Scientific Reports, 10(1), Article 10508. https://doi.org/10.1038/s41598-020-67483-8, https://doi.org/10.1038/s41598-020-67483-8
https://dspace.library.uu.nl/bitstream/handle/1874/410913/s41598_020_67483_8.pdf?sequence=1

Witkowski, C. R., van der Meer, M. T. J., Blais, B., Sinninghe Damsté, J. S., & Schouten, S. (2020). Algal biomarkers as a proxy for pCO₂: Constraints from late quaternary sapropels in the eastern Mediterranean. Organic Geochemistry, 150, Article 104123. https://doi.org/10.1016/j.orggeochem.2020.104123
https://dspace.library.uu.nl/bitstream/handle/1874/410911/1_s2.0_S0146638020301583_main.pdf?sequence=1

van Winden, J. F., Talbot, H. M., Reichart, G. J., McNamara, N. P., Benthien, A., & Sinninghe Damsté, J. S. (2020). Influence of temperature on the δ¹³C values and distribution of methanotroph-related hopanoids in Sphagnum-dominated peat bogs. Geobiology, 18(4), 497-507. https://doi.org/10.1111/gbi.12389
https://dspace.library.uu.nl/bitstream/handle/1874/410588/gbi.12389.pdf?sequence=1

Weiss, G. M., Massalska, B., Hennekam, R., Reichart, G. J., Sinninghe Damsté, J. S., Schouten, S., & van der Meer, M. T. J. (2020). Alkenone Distributions and Hydrogen Isotope Ratios Show Changes in Haptophyte Species and Source Water in the Holocene Baltic Sea. Geochemistry, Geophysics, Geosystems, 21(2), Article e2019GC008751. https://doi.org/10.1029/2019GC008751
https://dspace.library.uu.nl/bitstream/handle/1874/410587/2019GC008751.pdf?sequence=1

van Bree, L. G. J., Peterse, F., Baxter, A. J., De Crop, W., Van Grinsven, S., Villanueva, L., Verschuren, D., & Sinninghe Damsté, J. S. (2020). Seasonal variability and sources of in situ brGDGT production in a permanently stratified African crater lake. Biogeosciences, 17(21), 5443-5463. https://doi.org/10.5194/bg-17-5443-2020
https://dspace.library.uu.nl/bitstream/handle/1874/409720/bg_17_5443_2020.pdf?sequence=1

Dearing Crampton-Flood, E., Noorbergen, L. J., Smits, D., Christine Boschman, R., Donders, T. H., Munsterman, D. K., Ten Veen, J., Peterse, F., Lourens, L., & Sinninghe Damsté, J. S. (2020). A new age model for the Pliocene of the southern North Sea basin: A multi-proxy climate reconstruction. Climate of the Past, 16(2), 523-541. https://doi.org/10.5194/cp-16-523-2020
https://dspace.library.uu.nl/bitstream/handle/1874/396124/cp_16_523_2020.pdf?sequence=1

Dearing Crampton-Flood, E., Tierney, J. E., Peterse, F., Kirkels, F. M. S. A., & Sinninghe Damsté, J. S. (2020). BayMBT: A Bayesian calibration model for branched glycerol dialkyl glycerol tetraethers in soils and peats. Geochimica et Cosmochimica Acta, 268, 142-159. https://doi.org/10.1016/j.gca.2019.09.043
https://dspace.library.uu.nl/bitstream/handle/1874/386382/1_s2.0_S0016703719306295_main.pdf?sequence=1

2019

Scholarly publications

Oshkin, I. Y., Kulicheyskaya, I. S., Rijpstra, W. I. C., Sinninghe Damste, J. S., Rakitin, A. L., Ravin, N., & Dedysh, S. N. (2019). Granulicella sibirica sp. nov., a psychrotolerant acidobacterium isolated from an organic soil layer in forested tundra, West Siberia. International Journal of Systematic and Evolutionary Microbiology, 69(4), 1195-1201. https://doi.org/10.1099/ijsem.0.003290
https://research-portal.uu.nl/ws/files/227544501/1195_ijsem003290.pdf

Sollai, M., Villanueva, L., Hopmans, E. C., Keil, R. G., & Damste, J. S. S. (2019). Archaeal Sources of Intact Membrane Lipid Biomarkers in the Oxygen Deficient Zone of the Eastern Tropical South Pacific. https://doi.org/10.3389/fmicb.2019.00765

Bale, N. J., Palatinszky, M., Rijpstra, W. I. C., Herbold, C. W., Wagner, M., & Sinninghe Damsté, J. S. (2019). Membrane Lipid Composition of the Moderately Thermophilic Ammonia-Oxidizing Archaeon “ Candidatus Nitrosotenuis uzonensis” at Different Growth Temperatures. Applied and Environmental Microbiology, 85(20), 1-17. https://doi.org/10.1128/AEM.01332-19
https://research-portal.uu.nl/ws/files/227526981/bale-et-al-2019-membrane-lipid-composition-of-the-moderately-thermophilic-ammonia-oxidizing-archaeon-candidatus.pdf

Weiss, G. M., Chivall, D., Kasper, S., Nakamura, H., Costa, F. D., Soudant, P., Damsté, J. S. S., Schouten, S., & Meer, M. T. J. V. D. (2019, Apr 29). Impact of metabolic pathways and salinity on the hydrogen isotope ratios of haptophyte lipids. https://doi.org/10.5194/bg-2019-147

Fletcher, T., Warden, L., Damsté, J. S. S., Brown, K. J., Rybczynski, N., Gosse, J., & Ballantyne, A. P. (2019). Evidence for fire in the Pliocene Arctic in response to amplified temperature. Climate of the Past, 15, 1063-1081. https://doi.org/10.5194/cp-15-1063-2019

Rush, D., Talbot, H. M., Meer, M. T. J. V. D., Hopmans, E. C., Douglas, B., & Damsté, J. S. S. (2019). Biomarker evidence for the occurrence of anaerobic ammonium oxidation in the eastern Mediterranean Sea during Quaternary and Pliocene sapropel formation. Biogeosciences, 16, 2467-2479. https://doi.org/10.5194/bg-2019-27
https://research-portal.uu.nl/ws/files/244779707/bg-2019-27.pdf

Baxter, A. J., Hopmans, E. C., Russell, J. M., van Bree, L. G. J., Peterse, F., Verschuren, D., & Sinninghe Damsté, J. S. (2019). Bacterial GMGTs in East African lakes: Sources and their potential as paleotemperature indicators. In 29th International Meeting on Organic Geochemistry, IMOG 2019 European Association of Geoscientists and Engineers, EAGE. https://doi.org/10.3997/2214-4609.201902873
https://dspace.library.uu.nl/bitstream/handle/1874/414574/O41.pdf?sequence=1

Witkowski, C. R., Agostini, S., Harvey, B. P., Van Der Meer, M. T. J., Sinninghe Damsté, J. S., & Schouten, S. (2019). Validation of carbon isotope fractionation in algal lipids as a pCO₂ proxy using a natural CO₂ seep (Shikine Island, Japan). Biogeosciences, 16(22), 4451-4461. https://doi.org/10.5194/bg-16-4451-2019
https://dspace.library.uu.nl/bitstream/handle/1874/392549/bg_16_4451_2019.pdf?sequence=1

Bale, N. J., Hennekam, R., Hopmans, E. C., Dorhout, D., Reichart, G.-J., van der Meer, M., Villareal, T. A., Damsté, J. S. S., & Schouten, S. (2019). Biomarker evidence for nitrogen-fixing cyanobacterial blooms in a brackish surface layer in the Nile River plume during sapropel deposition. Geology, 47(11), 1088-1092. https://doi.org/10.1130/G46682.1
https://dspace.library.uu.nl/bitstream/handle/1874/390851/1088.pdf?sequence=1

Lengger, S. K., Rush, D., Mayser, J. P., Blewett, J., Schwartz-Narbonne, R., Talbot, H. M., Middelburg, J. J., Jetten, M. S. M., Schouten, S., Sinninghe Damsté, J. S., & Pancost, R. D. (2019). Dark carbon fixation in the Arabian Sea oxygen minimum zone contributes to sedimentary organic carbon (SOM). Global Biogeochemical Cycles, 33(12), 1715-1732. https://doi.org/10.1029/2019GB006282
https://dspace.library.uu.nl/bitstream/handle/1874/391247/2019GB006282.pdf?sequence=1

Sorokin, D. Y., Yakimov, M., Messina, E., Merkel, A. Y., Bale, N. J., & Sinninghe Damste, J. S. (2019). Natronolimnobius sulfurireducens sp. Nov. and Halalkaliarchaeum desulfuricum gen. nov., sp. Nov., the first sulfur-respiring alkaliphilic haloarchaea from hypersaline alkaline lakes. International Journal of Systematic and Evolutionary Microbiology, 69(9), 2662-2673. https://doi.org/10.1099/ijsem.0.003506
https://research-portal.uu.nl/ws/files/237169666/2662_ijsem003506.pdf

Van Kemenade, Z. R., Villanueva, L., Hopmans, E. C., Erdem, Z., Kraal, P., Sinninghe Damsté, J. S., & Rush, D. (2019). Lipids of microorganisms involved in the nitrogen cycle of the Benguela upwelling. Paper presented at 29th International Meeting on Organic Geochemistry, IMOG 2019, Gothenburg, Sweden. https://doi.org/10.3997/2214-4609.201902932

Dearing Crampton-Flood, E., Smits, D., van der Molen, G., Noorbergen, L. J., Lourens, L., Munsterman, D., Van Der Weijst, C., Donders, T., Peterse, F., & Sinninghe Damsté, J. S. (2019). Towards reliable reconstructions of Pliocene terrestrial temperatures using branched tetraether membrane lipids. Paper presented at 29th International Meeting on Organic Geochemistry, IMOG 2019, Gothenburg, Sweden. https://doi.org/10.3997/2214-4609.201902854

Bale, N. J., Sorokin, D. Y., Hopmans, E. C., Koenen, M., Irene Rijpstra, W. C., Villanueva, L., Wienk, H., & Sinninghe Damsté, J. S. (2019). New insights into the polar lipid composition of extremely halo(alkali)philic euryarchaea from hypersaline lakes. Frontiers in Microbiology, 10(MAR), Article 377. https://doi.org/10.3389/fmicb.2019.00377
https://dspace.library.uu.nl/bitstream/handle/1874/387662/fmicb_10_00377.pdf?sequence=1

Bale, N. J., Rijpstra, W. I. C., Sahonero-Canavesi, D. X., Oshkin, I. Y., Belova, S. E., Dedysh, S. N., & Damste, J. S. S. (2019). Fatty acid and hopanoid adaption to cold in the methanotroph Methylovulum psychrotolerans. Frontiers in Microbiology, 10(APR), Article 589. https://doi.org/10.3389/fmicb.2019.00589
https://dspace.library.uu.nl/bitstream/handle/1874/387661/fmicb_10_00589.pdf?sequence=1

Bale, N. J., Irene C Rijpstra, W., Canavesi, D. S., Oshkin, I. Y., Belova, S. E., Dedysh, S. N., & Sinninghe Damsté, J. S. (2019). Fatty acid and hopanoid adaption to cold in the methanotroph Methylovulum pyschrotolerans. Paper presented at 29th International Meeting on Organic Geochemistry, IMOG 2019, Gothenburg, Sweden. https://www.scopus.com/inward/record.uri?eid=2-s2.0-85074285696&partnerID=40&md5=22dd85c7df69226594497fb552e65198

Boschman, R. C., Bale, N., Hopmans, E. C., Haas, A. F., Villanueva, L., & Sinninghe Damsté, J. S. (2019). Comparing the lipidomes of different marine environments. Paper presented at 29th International Meeting on Organic Geochemistry, IMOG 2019, Gothenburg, Sweden. https://doi.org/10.3997/2214-4609.201902781

Perez Gallego, R., Van Der Meer, M. T. J., Bale, N., Lattaud, J., Sinninghe Damsté, J., & Villanueva, L. (2019). Distribution of alkenone desaturase genes in long-chain alkenone haptophyte producers under changing environmental conditions. Paper presented at 29th International Meeting on Organic Geochemistry, IMOG 2019, Gothenburg, Sweden. https://doi.org/10.3997/2214-4609.201902705

Rush, D., Villanueva, L., Van Der Meer, M. T. J., Hopmans, E. C., & Sinninghe Damsté, J. S. (2019). Aerobic methanotrophy in North Sea sediment and Baltic Sea water column as revealed by bacteriohopanepolyol lipids and genomic approaches. Paper presented at 29th International Meeting on Organic Geochemistry, IMOG 2019, Gothenburg, Sweden. https://www.scopus.com/inward/record.uri?eid=2-s2.0-85074282343&partnerID=40&md5=5085053cae57235669132310a62e7819

Gale, A. S., Jenkyns, H. C., Tsikos, H., van Breugel, Y., Damste, J. S. S., Bottini, C., Erba, E., Russo, F., Falzoni, F., Petrizzo, M. R., Dickson, A. J., & Wray, D. S. (2019). High-resolution bio-and chemostratigraphy of an expanded record of Oceanic Anoxic Event 2 (Late Cenomanian–Early Turonian) at Clot Chevalier, near Barrême, SE France (Vocontian Basin). Newsletters on Stratigraphy, 52(1), 97-129. https://doi.org/10.1127/nos/2018/0445
https://dspace.library.uu.nl/bitstream/handle/1874/387660/nos_Volume_52_Number_1_p97_129_High_resolution_bio_and_chemostratigraphy_of_an_expanded_record_of_Oceanic_Anoxic_Event_2_Late_Cenomanian_Early_Turonian_at_Clot_Chevalier_near_Barreme_.pdf?sequence=1

Sorokin, D. Y., Khijniak, T. V., Elcheninov, A. G., Toshchakov, S. V., Kostrikina, N. A., Bale, N. J., Sinninghe Damsté, J. S., & Kublanov, I. V. (2019). Halococcoides cellulosivorans gen. nov., sp. nov., an extremely halophilic cellulose-utilizing haloarchaeon from hypersaline lakes. International Journal of Systematic and Evolutionary Microbiology, 69(5), 1327-1335. https://doi.org/10.1099/ijsem.0.003312
https://research-portal.uu.nl/ws/files/243882163/1327_ijsem003312.pdf

Sorokin, D. Y., Elcheninov, A. G., Toshchakov, S. V., Bale, N. J., Sinninghe Damsté, J. S., Khijniak, T. V., & Kublanov, I. V. (2019). Natrarchaeobius chitinivorans gen. nov., sp. nov., and Natrarchaeobius halalkaliphilus sp. nov., alkaliphilic, chitin-utilizing haloarchaea from hypersaline alkaline lakes. Systematic and Applied Microbiology, 42(3), 309-318. https://doi.org/10.1016/j.syapm.2019.01.001
https://dspace.library.uu.nl/bitstream/handle/1874/387659/1_s2.0_S0723202018304387_main.pdf?sequence=1

Baxter, A. J., Hopmans, E. C., Russell, J. M., & Sinninghe Damsté, J. S. (2019). Bacterial GMGTs in East African lake sediments: Their potential as palaeotemperature indicators. Geochimica et Cosmochimica Acta, 259, 155-169. https://doi.org/10.1016/j.gca.2019.05.039
https://dspace.library.uu.nl/bitstream/handle/1874/387658/1_s2.0_S0016703719303230_main.pdf?sequence=1

Etourneau, J., Sgubin, G., Crosta, X., Swingedouw, D., Willmott, V., Barbara, L., Houssais, M. N., Schouten, S., Sinninghe Damsté, J. S., Goosse, H., Escutia, C., Crespin, J., Massé, G., & Kim, J. H. (2019). Ocean temperature impact on ice shelf extent in the eastern Antarctic Peninsula. Nature Communications, 10(1), Article 304. https://doi.org/10.1038/s41467-018-08195-6
https://dspace.library.uu.nl/bitstream/handle/1874/387647/Ocean_temperature_impact_on_ice_shelf_extent_in_the_eastern_Antarctic_Peninsula.pdf?sequence=1

de Bar, M. W., Rampen, S. W., Hopmans, E. C., Sinninghe Damsté, J. S., & Schouten, S. (2019). Constraining the applicability of organic paleotemperature proxies for the last 90 Myrs. Organic Geochemistry, 128, 122-136. https://doi.org/10.1016/j.orggeochem.2018.12.005
https://dspace.library.uu.nl/bitstream/handle/1874/387646/1_s2.0_S0146638018302729_main.pdf?sequence=1

van Maldegem, L. M., Sansjofre, P., Weijers, J. W. H., Wolkenstein, K., Strother, P. K., Wörmer, L., Hefter, J., Nettersheim, B. J., Hoshino, Y., Schouten, S., Sinninghe Damsté, J. S., Nath, N., Griesinger, C., Kuznetsov, N. B., Elie, M., Elvert, M., Tegelaar, E., Gleixner, G., & Hallmann, C. (2019). Bisnorgammacerane traces predatory pressure and the persistent rise of algal ecosystems after Snowball Earth. Nature Communications, 10(1), Article 476. https://doi.org/10.1038/s41467-019-08306-x
https://dspace.library.uu.nl/bitstream/handle/1874/387644/Snowball_Earth.pdf?sequence=1

Schreuder, L. T., Hopmans, E. C., Castañeda, I. S., Schefuß, E., Mulitza, S., Sinninghe Damsté, J. S., & Schouten, S. (2019). Late Quaternary Biomass Burning in Northwest Africa and Interactions With Climate, Vegetation, and Humans. Paleoceanography and Paleoclimatology, 34(2), 153-163. https://doi.org/10.1029/2018PA003467
https://dspace.library.uu.nl/bitstream/handle/1874/387643/Schreuder_et_al_2019_Paleoceanography_and_Paleoclimatology.pdf?sequence=1

Weiss, G. M., Schouten, S., Sinninghe Damsté, J. S., & van der Meer, M. T. J. (2019). Constraining the application of hydrogen isotopic composition of alkenones as a salinity proxy using marine surface sediments. Geochimica et Cosmochimica Acta, 250, 34-48. https://doi.org/10.1016/j.gca.2019.01.038
https://dspace.library.uu.nl/bitstream/handle/1874/387797/1_s2.0_S0016703719300638_main.pdf?sequence=1

Kumar, D. M., Woltering, M., Hopmans, E. C., Sinninghe Damsté, J. S., Schouten, S., & Werne, J. P. (2019). The vertical distribution of Thaumarchaeota in the water column of Lake Malawi inferred from core and intact polar tetraether lipids. Organic Geochemistry, 132, 37-49. https://doi.org/10.1016/j.orggeochem.2019.03.004
https://dspace.library.uu.nl/bitstream/handle/1874/387642/Vertical_distribution_of_Thaumarchaeota.pdf?sequence=1

Lattaud, J., Lo, L., Zeeden, C., Liu, Y. J., Song, S. R., van der Meer, M. T. J., Sinninghe Damsté, J. S., & Schouten, S. (2019). A multiproxy study of past environmental changes in the Sea of Okhotsk during the last 1.5 Ma. Organic Geochemistry, 132, 50-61. https://doi.org/10.1016/j.orggeochem.2019.04.003
https://dspace.library.uu.nl/bitstream/handle/1874/387541/multiproxy.pdf?sequence=1

de Bar, M. W., Ullgren, J. E., Thunnell, R. C., Wakeham, S. G., Brummer, G. J. A., Stuut, J. B. W., Sinninghe Damste, J. S., & Schouten, S. (2019). Long-chain diols in settling particles in tropical oceans: Insights into sources, seasonality and proxies. Biogeosciences, 16(8), 1705-1727. https://doi.org/10.5194/bg-16-1705-2019
https://dspace.library.uu.nl/bitstream/handle/1874/387641/Long_chain_diols_in_settling_particles_in_tropical_oceans.pdf?sequence=1

Besseling, M. A., Hopmans, E. C., Koenen, M., van der Meer, M. T. J., Vreugdenhil, S., Schouten, S., Sinninghe Damsté, J. S., & Villanueva, L. (2019). Depth-related differences in archaeal populations impact the isoprenoid tetraether lipid composition of the Mediterranean Sea water column. Organic Geochemistry, 135, 16-31. https://doi.org/10.1016/j.orggeochem.2019.06.008
https://dspace.library.uu.nl/bitstream/handle/1874/387640/Depth_related_differences_in_archael_populations.pdf?sequence=1

Lattaud, J., Erdem, Z., Weiss, G. M., Rush, D., Balzano, S., Chivall, D., van der Meer, M. T. J., Hopmans, E. C., Sinninghe Damsté, J. S., & Schouten, S. (2019). Hydrogen isotopic ratios of long-chain diols reflect salinity. Organic Geochemistry, 137, Article 103904. https://doi.org/10.1016/j.orggeochem.2019.103904
https://dspace.library.uu.nl/bitstream/handle/1874/387795/1_s2.0_S0146638019301408_main.pdf?sequence=1

Weiss, G. M., de Bar, M. W., Stolwijk, D. J., Schouten, S., Sinninghe Damsté, J. S., & van der Meer, M. T. J. (2019). Paleosensitivity of Hydrogen Isotope Ratios of Long-Chain Alkenones to Salinity Changes at the Chile Margin. Paleoceanography and Paleoclimatology, 34(6), 978-989. https://doi.org/10.1029/2019PA003591
https://dspace.library.uu.nl/bitstream/handle/1874/387639/Weiss_et_al_2019_Paleoceanography_and_Paleoclimatology.pdf?sequence=1

Smit, N. T., Rush, D., Sahonero-Canavesi, D. X., Verweij, M., Rasigraf, O., Guerrero Cruz, S., Jetten, M. S. M., Sinninghe Damsté, J. S., & Schouten, S. (2019). Demethylated hopanoids in ‘Ca. Methylomirabilis oxyfera’ as biomarkers for environmental nitrite-dependent methane oxidation. Organic Geochemistry, 137, Article 103899. https://doi.org/10.1016/j.orggeochem.2019.07.008
https://dspace.library.uu.nl/bitstream/handle/1874/387637/1_s2.0_S0146638019301299_main.pdf?sequence=1

Smit, N. T., Rush, D., Van Der Meer, M. T. J., Grassa, F., Villlanueva, L., Sinninghe Damsté, J. S., & Schouten, S. (2019). Aerobic oxidation of methane and ethane by unconventional microbes at a terrestrial methane seep in Sicily, Italy. In 29th International Meeting on Organic Geochemistry, IMOG 2019 European Association of Geoscientists and Engineers, EAGE. https://doi.org/10.3997/2214-4609.201902874
https://dspace.library.uu.nl/bitstream/handle/1874/387549/Aerobic_oxidation_of_methane_and_ethane_by_unconventional_microbes_at_a_terrestrial_methane_seep_in_Sicily_Italy.pdf?sequence=1

Balzano, S., Villanueva, L., de Bar, M., Sahonero Canavesi, D. X., Yildiz, C., Engelmann, J. C., Marechal, E., Lupette, J., Sinninghe Damsté, J. S., & Schouten, S. (2019). Biosynthesis of Long Chain Alkyl Diols and Long Chain Alkenols in Nannochloropsis spp. (Eustigmatophyceae). Plant & cell physiology, 60(8), 1666-1682. https://doi.org/10.1093/pcp/pcz078
https://dspace.library.uu.nl/bitstream/handle/1874/387636/pcz078.pdf?sequence=1

Lattaud, J., Erdem, Z., Weiss, G. M., Van Der Meer, M. T. J., Hopmans, E. C., Rush, D., Sinninghe Damsté, J. S., & Schouten, S. (2019). Hydrogen isotopic values of long-chain diol isomers in sediments across a salinity gradient. In 29th International Meeting on Organic Geochemistry, IMOG 2019 European Association of Geoscientists and Engineers, EAGE. https://doi.org/10.3997/2214-4609.201903059
https://research-portal.uu.nl/ws/files/235747078/O71.pdf

Weiss, G., Massalska, B., Hennekam, R., Reichart, G.-J., Sinninghe Damsté, J. S., Schouten, S., & Van Der Meer, M. T. J. (2019). Baltic sea alkenones: Novel insights into distribution changes and hydrogen isotope ratios during the Holocene. In 29th International Meeting on Organic Geochemistry, IMOG 2019 European Association of Geoscientists and Engineers, EAGE. https://doi.org/10.3997/2214-4609.201903057
https://research-portal.uu.nl/ws/files/235746836/O67.pdf

Dearing Crampton-Flood, E., Peterse, F., & Sinninghe Damsté, J. S. (2019). Production of branched tetraethers in the marine realm: Svalbard fjord sediments revisited. Organic Geochemistry, 138, Article 103907. https://doi.org/10.1016/j.orggeochem.2019.103907
https://dspace.library.uu.nl/bitstream/handle/1874/385719/1_s2.0_S0146638019301433_main.pdf?sequence=1

Weiss, G. M., Roepert, A., Middelburg, J. J., Schouten, S., Sinninghe Damsté, J. S., & van der Meer, M. T. J. (2019). Hydrogen isotope fractionation response to salinity and alkalinity in a calcifying strain of Emiliania huxleyi. Organic Geochemistry, 134, 62-65. https://doi.org/10.1016/j.orggeochem.2019.06.001
https://dspace.library.uu.nl/bitstream/handle/1874/384385/Hydrogen.pdf?sequence=1

Frieling, J., Peterse, F., Lunt, D. J., Bohaty, S. M., Sinninghe Damsté, J. S., Reichart, G.-J., & Sluijs, A. (2019). Widespread Warming Before and Elevated Barium Burial During the Paleocene-Eocene Thermal Maximum: Evidence for Methane Hydrate Release? Paleoceanography and Paleoclimatology, 34(4), 546-566. https://doi.org/10.1029/2018PA003425
https://dspace.library.uu.nl/bitstream/handle/1874/380615/Frieling_et_al_2019_Paleoceanography_and_Paleoclimatology.pdf?sequence=1

Schreuder, L. T., Donders, T. H., Mets, A., Hopmans, E. C., Sinninghe Damsté, J. S., & Schouten, S. (2019). Comparison of organic and palynological proxies for biomass burning and vegetation in a lacustrine sediment record (Lake Allom, Fraser Island, Australia). Organic Geochemistry, 133, 10-19. https://doi.org/10.1016/j.orggeochem.2019.03.002
https://dspace.library.uu.nl/bitstream/handle/1874/380614/1_s2.0_S0146638019300439_main.pdf?sequence=1

Sollai, M., Villanueva, L., Hopmans, E. C., Reichart, G.-J., & Sinninghe Damsté, J. S. (2019). A combined lipidomic and 16S rRNA gene amplicon sequencing approach reveals archaeal sources of intact polar lipids in the stratified Black Sea water column. Geobiology, 17(1), 91-109. https://doi.org/10.1111/gbi.12316
https://dspace.library.uu.nl/bitstream/handle/1874/377911/Sollai_et_al_2019_Geobiology.pdf?sequence=1

Professional publications

de Bar, M. W., Dorhout, D. J. C., Hopmans, E. C., Rampen, S. W., Sinninghe Damsté, J. S., & Schouten, S. (2019). Corrigendum to “Constraints on the application of long chain diol proxies in the Iberian Atlantic margin” (Organic Geochemistry (2016) 101 (184–195), (S014663801630211X) (10.1016/j.orggeochem.2016.09.005)). Organic Geochemistry, 130, 51-52. https://doi.org/10.1016/j.orggeochem.2019.01.010
https://research-portal.uu.nl/ws/files/245920588/1-s2.0-S0146638019300105-main.pdf

Sorokin, D. Y., Khijniak, T. V., Kostrikina, N. A., Elcheninov, A. G., Toshchakov, S. V., Bale, N. J., Sinninghe Damsté, J. S., & Kublanov, I. V. (2019). Corrigendum to “Natronobiforma cellulositropha gen. nov., sp. nov., a novel haloalkaliphilic member of the family Natrialbaceae (class Halobacteria) from hypersaline alkaline lakes” [Syst. Appl. Microbiol. 41 (2018) 355–362]. Systematic and Applied Microbiology, 42(2), 261-262. https://doi.org/10.1016/j.syapm.2018.11.007
https://dspace.library.uu.nl/bitstream/handle/1874/380516/1_s2.0_S0723202018304922_main.pdf?sequence=1

2018

Scholarly publications

Villanueva, L., von Meijenfeldt, F. A. B., Westbye, A. B., Hopmans, E. C., Dutilh, B. E., & Sinninghe Damsté, J. S. (2018). Bridging the divide: bacteria synthesizing archaeal membrane lipids. bioRxiv. https://doi.org/10.1101/448035

Dedysh, S. N., & Sinninghe Damsté, J. S. (2018). Acidobacteria. In John Wiley & Sons Ltd (Ed.), eLS: Encyclopedia of Life Sciences Wiley. https://doi.org/10.1002/9780470015902.a0027685
https://dspace.library.uu.nl/bitstream/handle/1874/376273/dedysh.pdf?sequence=1

Weber, Y., Sinninghe Damsté, J. S., Zopfi, J., De Jonge, C., Gilli, A., Schubert, C. J., Lepori, F., Lehmann, M. F., & Niemann, H. (2018). Redox-dependent niche differentiation provides evidence for multiple bacterial sources of glycerol tetraether lipids in lakes. Proceedings of the National Academy of Sciences of the United States of America, 115(43), 10926-10931. https://doi.org/10.1073/pnas.1805186115
https://dspace.library.uu.nl/bitstream/handle/1874/376769/weber.pdf?sequence=1

Sorokin, D. Y., Khijniak, T. V., Kostrikina, N. A., Elcheninov, A. G., Toshchakov, S. V., Bale, N. J., Sinninghe Damsté, J. S., & Kublanov, I. V. (2018). Natronobiforma cellulositropha gen. nov., sp. nov., a novel haloalkaliphilic member of the family Natrialbaceae (class Halobacteria) from hypersaline alkaline lakes. Systematic and Applied Microbiology, 41(4), 355-362. https://doi.org/10.1016/j.syapm.2018.04.002
https://dspace.library.uu.nl/bitstream/handle/1874/376206/sorokin.pdf?sequence=1

Belova, S. E., Ravin, N. V., Pankratov, T. A., Rakitin, A. L., Ivanova, A. A., Beletsky, A. V., Mardanov, A. V., Sinninghe Damsté, J. S., & Dedysh, S. N. (2018). Hydrolytic capabilities as a key to environmental success: Chitinolytic and cellulolytic acidobacteriafrom acidic sub-arctic soils and boreal peatlands. Frontiers in Microbiology, 9(NOV), Article 02775. https://doi.org/10.3389/fmicb.2018.02775
https://dspace.library.uu.nl/bitstream/handle/1874/376205/Hydrolytic.pdf?sequence=1

Lipsewers, Y. A., Hopmans, E. C., Sinninghe Damsté, J. S., & Villanueva, L. (2018). Potential recycling of thaumarchaeotal lipids by DPANN Archaea in seasonally hypoxic surface marine sediments. Organic Geochemistry, 119, 101-109. https://doi.org/10.1016/j.orggeochem.2017.12.007
https://dspace.library.uu.nl/bitstream/handle/1874/376204/lipsewers.pdf?sequence=1

Sinninghe Damsté, J. S., Rijpstra, W. I. C., Hopmans, E. C., den Uijl, M. J., Weijers, J. W. H., & Schouten, S. (2018). The enigmatic structure of the crenarchaeol isomer. Organic Geochemistry, 124, 22-28. https://doi.org/10.1016/j.orggeochem.2018.06.005
https://dspace.library.uu.nl/bitstream/handle/1874/376203/sinninghe_damste.pdf?sequence=1

Reiche, S., Rampen, S. W., Dorhout, D. J. C., Sinninghe Damsté, J. S., & Schouten, S. (2018). The impact of oxygen exposure on long-chain alkyl diols and the long chain diol index (LDI) – a long-term incubation study. Organic Geochemistry, 124, 238-246. https://doi.org/10.1016/j.orggeochem.2018.08.003
https://dspace.library.uu.nl/bitstream/handle/1874/376202/reiche.pdf?sequence=1

Russell, J. M., Hopmans, E. C., Loomis, S. E., Liang, J., & Sinninghe Damsté, J. S. (2018). Distributions of 5- and 6-methyl branched glycerol dialkyl glycerol tetraethers (brGDGTs) in East African lake sediment: Effects of temperature, pH, and new lacustrine paleotemperature calibrations. Organic Geochemistry, 117, 56-69. https://doi.org/10.1016/j.orggeochem.2017.12.003
https://dspace.library.uu.nl/bitstream/handle/1874/376201/russell.pdf?sequence=1

Dessandier, P. A., Bonnin, J., Malaizé, B., Lambert, C., Tjallingii, R., Warden, L., Sinninghe Damsté, J. S., & Kim, J. H. (2018). Variations in benthic foraminiferal assemblages in the Tagus mud belt during the last 5700 years: Implications for Tagus River discharge. Palaeogeography, Palaeoclimatology, Palaeoecology, 496, 225-237. https://doi.org/10.1016/j.palaeo.2018.01.040
https://dspace.library.uu.nl/bitstream/handle/1874/376200/dessandier.pdf?sequence=1

Bale, N. J., Hopmans, E. C., Dorhout, D., Stal, L. J., Grego, M., van Bleijswijk, J., Sinninghe Damsté, J. S., & Schouten, S. (2018). A novel heterocyst glycolipid detected in a pelagic N₂-fixing cyanobacterium of the genus Calothrix. Organic Geochemistry, 123, 44-47. https://doi.org/10.1016/j.orggeochem.2018.06.009
https://dspace.library.uu.nl/bitstream/handle/1874/376199/A_novel.pdf?sequence=1

Schreuder, L. T., Hopmans, E. C., Stuut, J. B. W., Sinninghe Damsté, J. S., & Schouten, S. (2018). Transport and deposition of the fire biomarker levoglucosan across the tropical North Atlantic Ocean. Geochimica et Cosmochimica Acta, 227, 171-185. https://doi.org/10.1016/j.gca.2018.02.020
https://dspace.library.uu.nl/bitstream/handle/1874/376198/schreuder.pdf?sequence=1

Sorokin, D. Y., Merkel, A. Y., Abbas, B., Makarova, K. S., Rijpstra, W. I. C., Koenen, M., Sinninghe Damsté, J. S., Galinski, E. A., Koonin, E. V., & Van Loosdrecht, M. C. M. (2018). Methanonatronarchaeum thermophilum gen. Nov., sp. nov. and ’Candidatus methanohalarchaeum thermophilum’, extremely halo(natrono)philic methyl-reducing methanogens from hypersaline lakes comprising a new euryarchaeal class Methanonatronarchaeia classis nov. International Journal of Systematic and Evolutionary Microbiology, 68(7), 2199-2208. https://doi.org/10.1099/ijsem.0.002810
https://research-portal.uu.nl/ws/files/248804722/2199_ijsem002810.pdf

Sinninghe Damsté, J. S., Rijpstra, W. I. C., Foesel, B. U., Huber, K. J., Overmann, J., Nakagawa, S., Kim, J. J., Dunfield, P. F., Dedysh, S. N., & Villanueva, L. (2018). An overview of the occurrence of ether- and ester-linked iso-diabolic acid membrane lipids in microbial cultures of the Acidobacteria: Implications for brGDGT paleoproxies for temperature and pH. Organic Geochemistry, 124, 63-76. https://doi.org/10.1016/j.orggeochem.2018.07.006
https://dspace.library.uu.nl/bitstream/handle/1874/376197/sinninghe_damste2.pdf?sequence=1

Bale, N., de Vries, S., Hopmans, E. C., Sinninghe Damsté, J. S., & Schouten, S. (2018). Corrigendum to “A method for quantifying heterocyst glycolipids in biomass and sediments” [Org. Geochem. 110 (2017) 33–35](S0146638016303576)(10.1016/j.orggeochem.2017.04.010). Organic Geochemistry, 121. https://doi.org/10.1016/j.orggeochem.2018.04.002
https://dspace.library.uu.nl/bitstream/handle/1874/395264/bale.pdf?sequence=1

Witkowski, C. R., Weijers, J. W. H., Blais, B., Schouten, S., & Sinninghe Damsté, J. S. (2018). Molecular fossils from phytoplankton reveal secular PCO₂ trend over the phanerozoic. Science advances, 4(11), Article eaat4556. https://doi.org/10.1126/sciadv.aat4556, https://doi.org/10.1126/sciadv.aat4556
https://dspace.library.uu.nl/bitstream/handle/1874/376196/witkowski.pdf?sequence=1

Russell, J. M., Hopmans, E. C., Loomis, S. E., Liang, J., & Sinninghe Damsté, J. S. (2018). Corrigendum to “Distributions of 5- and 6-methyl branched glycerol dialkyl glycerol tetraethers (brGDGTs) in East African lake sediment: Effects of temperature, pH, and new lacustrine paleotemperature calibrations” (Organic Geochemistry (2018) 117 (56–69), (S0146638017304394) (10.1016/j.orggeochem.2017.12.003)). Organic Geochemistry, 125, 299-299. https://doi.org/10.1016/j.orggeochem.2018.08.007
https://dspace.library.uu.nl/bitstream/handle/1874/376195/russell2.pdf?sequence=1

Warden, L., Moros, M., Weber, Y., & Sinninghe Damsté, J. S. (2018). Change in provenance of branched glycerol dialkyl glycerol tetraethers over the Holocene in the Baltic Sea and its impact on continental climate reconstruction. Organic Geochemistry, 121, 138-154. https://doi.org/10.1016/j.orggeochem.2018.03.007
https://dspace.library.uu.nl/bitstream/handle/1874/376194/warden.pdf?sequence=1

Lattaud, J., Lo, L., Huang, J. J., Chou, Y. M., Gorbarenko, S. A., Sinninghe Damsté, J. S., & Schouten, S. (2018). A Comparison of Late Quaternary Organic Proxy-Based Paleotemperature Records of the Central Sea of Okhotsk. Paleoceanography and Paleoclimatology, 33(7), 732-744. https://doi.org/10.1029/2018PA003388
https://dspace.library.uu.nl/bitstream/handle/1874/376193/lattaud.pdf?sequence=1

De Bar, M. W., Stolwijk, D. J., McManus, J. F., Sinninghe Damsté, J. S., & Schouten, S. (2018). A late Quaternary climate record based on long-chain diol proxies from the Chilean margin. Climate of the Past, 14(11), 1783-1803. https://doi.org/10.5194/cp-14-1783-2018
https://dspace.library.uu.nl/bitstream/handle/1874/376192/de_bar.pdf?sequence=1

Bale, N. J., Villareal, T. A., Hopmans, E. C., Brussaard, C. P. D., Besseling, M., Dorhout, D., Sinninghe Damsté, J. S., & Schouten, S. (2018). C₅ glycolipids of heterocystous cyanobacteria track symbiont abundance in the diatom Hemiaulus hauckii across the tropical North Atlantic. Biogeosciences, 15(4), 1229-1241. https://doi.org/10.5194/bg-15-1229-2018
https://dspace.library.uu.nl/bitstream/handle/1874/375585/c5.pdf?sequence=1

Balzano, S., Lattaud, J., Villanueva, L., Rampen, S. W., Brussaard, C. P. D., Van Bleijswijk, J., Bale, N., Sinninghe Damsté, J. S., & Schouten, S. (2018). A quest for the biological sources of long chain alkyl diols in the western tropical North Atlantic Ocean. Biogeosciences, 15(19), 5951-5968. https://doi.org/10.5194/bg-15-5951-2018
https://dspace.library.uu.nl/bitstream/handle/1874/376191/A_quest.pdf?sequence=1

Timmers, P. H. A., Vavourakis, C. D., Kleerebezem, R., Sinninghe Damsté, J. S., Muyzer, G., Stams, A. J. M., Sorokin, D. Y., & Plugge, C. M. (2018). Metabolism and occurrence of methanogenic and sulfate-reducing syntrophic acetate oxidizing communities in haloalkaline environments. Frontiers in Microbiology, 9(DEC), Article 3039. https://doi.org/10.3389/fmicb.2018.03039
https://dspace.library.uu.nl/bitstream/handle/1874/376190/timmers.pdf?sequence=1

Besseling, M. A., Hopmans, E. C., Christine Boschman, R., Sinninghe Damsté, J. S., & Villanueva, L. (2018). Benthic archaea as potential sources of tetraether membrane lipids in sediments across an oxygen minimum zone. Biogeosciences, 15(13), 4047-4064. https://doi.org/10.5194/bg-15-4047-2018
https://dspace.library.uu.nl/bitstream/handle/1874/376189/Benthic.pdf?sequence=1

Heinzelmann, S. M., Villanueva, L., Lipsewers, Y. A., Sinke-Schoen, D., Sinninghe Damsté, J. S., Schouten, S., & van der Meer, M. T. J. (2018). Assessing the metabolism of sedimentary microbial communities using the hydrogen isotopic composition of fatty acids. Organic Geochemistry, 124, 123-132. https://doi.org/10.1016/j.orggeochem.2018.07.011
https://dspace.library.uu.nl/bitstream/handle/1874/388259/heinzelmann.pdf?sequence=1

Schreuder, L. T., Stuut, J. B. W., Korte, L. F., Sinninghe Damsté, J. S., & Schouten, S. (2018). Aeolian transport and deposition of plant wax n-alkanes across the tropical North Atlantic Ocean. Organic Geochemistry, 115, 113-123. https://doi.org/10.1016/j.orggeochem.2017.10.010
https://dspace.library.uu.nl/bitstream/handle/1874/376768/schreuder2.pdf?sequence=1

van Bree, L. G. J., Islam, M. M., Rijpstra, W. I. C., Verschuren, D., van Duin, A. C. T., Sinninghe Damsté, J. S., & de Leeuw, J. W. (2018). Origin, formation and environmental significance of des-A-arborenes in the sediments of an East African crater lake. Organic Geochemistry, 125, 95-108. https://doi.org/10.1016/j.orggeochem.2018.09.001
https://dspace.library.uu.nl/bitstream/handle/1874/371961/Origin.pdf?sequence=1

Lattaud, J., Kirkels, F., Peterse, F., Freymond, C. V., Eglinton, T. I., Hefter, J., Mollenhauer, G., Balzano, S., Villanueva, L., Van Der Meer, M. T. J., Hopmans, E. C., Sinninghe Damsté, J. S., & Schouten, S. (2018). Long-chain diols in rivers: Distribution and potential biological sources. Biogeosciences, 15(13), 4147-4161. https://doi.org/10.5194/bg-15-4147-2018
https://dspace.library.uu.nl/bitstream/handle/1874/366644/bg_15_4147_2018.pdf?sequence=1

van Bree, L. G. J., Peterse, F., van der Meer, M. T. J., Middelburg, J. J., Negash, A. M. D., De Crop, W., Cocquyt, C., Wieringa, J. J., Verschuren, D., & Sinninghe Damsté, J. S. (2018). Seasonal variability in the abundance and stable carbon-isotopic composition of lipid biomarkers in suspended particulate matter from a stratified equatorial lake (Lake Chala, Kenya/Tanzania): Implications for the sedimentary record. Quaternary Science Reviews, 192, 208-224. https://doi.org/10.1016/j.quascirev.2018.05.023
https://dspace.library.uu.nl/bitstream/handle/1874/365213/1_s2.0_S0277379117308387_main.pdf?sequence=1

Rochman, F. F., Kim, J.-J., Rijpstra, W. I. C., Sinninghe Damsté, J. S., Schumann, P., Verbeke, T. J., & Dunfield, P. F. (2018). Oleiharenicola alkalitolerans gen. nov., sp. nov., a new member of the phylum Verrucomicrobia isolated from an oilsands tailings pond. International Journal of Systematic and Evolutionary Microbiology, 68, 1078-1084. https://doi.org/10.1099/ijsem.0.002624
https://research-portal.uu.nl/ws/files/248231770/1078_ijsem002624.pdf

Belova, S. E., Suzina, N. E., Rijpstra, W. I. C., Sinninghe Damsté, J. S., & Dedysh, S. N. (2018). Edaphobacter lichenicola sp. Nov., a member of the family Acidobacteriaceae from lichen-dominated forested tundra. International Journal of Systematic and Evolutionary Microbiology, 68(4), 1265-1270. https://doi.org/10.1099/ijsem.0.002663
https://research-portal.uu.nl/ws/files/248231714/1265_ijsem002663.pdf

Steinle, L., Knittel, K., Felber, N., Casalino, C., de Lange, G., Tessarolo, C., Stadnitskaia, A., Sinninghe Damsté, J. S., Zopfi, J., Lehmann, M. F., Treude, T., & Niemann, H. (2018). Life on the edge: active microbial communities in the Kryos MgCl₂-brine basin at very low water activity. ISME Journal, 12, 1414-1426. https://doi.org/10.1038/s41396-018-0107-z
https://dspace.library.uu.nl/bitstream/handle/1874/365196/s41396_018_0107_z.pdf?sequence=1

Donders, T., Van Helmond, N. A. G. M., Verreussel, R., Munsterman, D., Veen, J. T., Speijer, R. P., Weijers, J. W. H., Sangiorgi, F., Peterse, F., Reichart, G.-J., Sinninghe Damsté, J. S., Lourens, L., Kuhlmann, G., & Brinkhuis, H. (2018). Land-sea coupling of early Pleistocene glacial cycles in the southern North Sea exhibit dominant Northern Hemisphere forcing. Climate of the Past, 14(3), 397-411. https://doi.org/10.5194/cp-14-397-2018
https://dspace.library.uu.nl/bitstream/handle/1874/363312/donders.pdf?sequence=1

Dearing Crampton-Flood, E. K. L. H., Peterse, F., Munsterman, D. K., & Sinninghe Damste, J. S. (2018). Using tetraether lipids archived in North Sea Basin sediments to extract North Western European Pliocene continental air temperatures. Earth and Planetary Science Letters, 490, 193-205. https://doi.org/10.1016/j.epsl.2018.03.030
https://dspace.library.uu.nl/bitstream/handle/1874/363297/crampton.pdf?sequence=1

2017

Scholarly publications

Sollai, M., Hopmans, E. C., Bale, N. J., Mets, A., Warden, L., Moros, M., & Sinninghe Damsté, J. S. (2017). The Holocene sedimentary record of cyanobacterial glycolipids in the Baltic Sea: an evaluation of their application as tracers of past nitrogen fixation. Biogeosciences, 14(24), 5789–5804. https://doi.org/10.5194/bg-14-5789-2017
https://research-portal.uu.nl/ws/files/227603636/bg-14-5789-2017.pdf

Weiss, G. M., Pfannerstill, E. Y., Schouten, S., Sinninghe Damsté, J. S., & van der Meer, M. T. J. (2017). Effects of alkalinity and salinity at low and high light intensity on hydrogen isotope fractionation of long-chain alkenones produced by Emiliania huxleyi. Biogeosciences, 14(24), 5693–5704. https://doi.org/10.5194/bg-14-5693-2017
https://dspace.library.uu.nl/bitstream/handle/1874/438667/bg-14-5693-2017.pdf?sequence=1

Kandiano, E. S., Van der Meer, M. T. J., Schouten, S., Fahl, K., Sinninghe Damsté, J. S., & Bauch, H. A. (2017). Response of the North Atlantic surface and intermediate ocean structure to climate warming of MIS 11. Scientific Reports, 7, Article 46192. https://doi.org/10.1038/srep46192
https://dspace.library.uu.nl/bitstream/handle/1874/366615/srep46192.pdf?sequence=1

Warden, L., Moros, M., Neumann, T., Shennan, S., Timpson, A., Manning, K. W., Sollai, M., Wacker, L., Perner, K., Häusler, K., Leipe, T., Zillén, L., Kotilainen, A., Jansen, E., Schneider, R., Oeberst, R., Arz, H. W., & Sinninghe Damsté, J. S. (2017). Climate induced human demographic and cultural change in northern Europe during the mid-Holocene. Scientific Reports, 7(1), Article 15251. https://doi.org/10.1038/s41598-017-14353-5
https://dspace.library.uu.nl/bitstream/handle/1874/366614/s41598_017_14353_5.pdf?sequence=1

Kulichevskaya, I. S., Ivanova, A. A., Detkova, E. N., Rijpstra, W. I. C., Sinninghe Damsté, J. S., & Dedysh, S. N. (2017). Tundrisphaera lichenicola gen. nov., sp. nov., a psychrotolerant representative of the family isosphaeraceae from lichendominated tundra soils. International Journal of Systematic and Evolutionary Microbiology, 67(9), 3583-3589. https://doi.org/10.1099/ijsem.0.002172

Lipsewers, Y. A., Vasquez-Cardenas, D., Seitaj, D., Schauer, R., Hidalgo-Martinez, S., Sinninghe Damsté, J. S., Meysman, F. J. R., Villanueva, L., & Boschker, H. T. S. (2017). Impact of Seasonal Hypoxia on Activity and Community Structure of Chemolithoautotrophic Bacteria in a Coastal Sediment. Applied and Environmental Microbiology, 83(10), Article e03517-16. https://doi.org/10.1128/AEM.03517-16
https://dspace.library.uu.nl/bitstream/handle/1874/365519/Hypoxia.pdf?sequence=1

Tierney, J. E., Sinninghe Damsté, J. S., Pancost, R. D., Sluijs, A., & Zachos, J. C. (2017). Eocene temperature gradients. Nature Geoscience, 10(8), 538-539. https://doi.org/10.1038/ngeo2997
https://dspace.library.uu.nl/bitstream/handle/1874/356028/8.pdf?sequence=1

O'Brien, C. L., Robinson, S. A., Pancost, R. D., Sinninghe Damsté, J. S., Schouten, S., Lunt, D. J., Alsenz, H., Bornemann, A., Bottini, C., Brassell, S. C., Farnsworth, A., Forster, A., Huber, B. T., Inglis, G. N., Jenkyns, H. C., Linnert, C., Littler, K., Markwick, P., Mcanena, A., ... Wrobel, N. E. (2017). Cretaceous sea-surface temperature evolution: Constraints from TEX 86 and planktonic foraminiferal oxygen isotopes. Earth-Science Reviews, 172, 224-247. https://doi.org/10.1016/j.earscirev.2017.07.012
https://dspace.library.uu.nl/bitstream/handle/1874/353133/cretacious.pdf?sequence=1

Nierop, K. G. J., Reichart, G.-J., Veld, H., & Sinninghe Damsté, J. S. (2017). The influence of oxygen exposure time on the composition of macromolecular organic matter as revealed by surface sediments on the Murray Ridge (Arabian Sea). Geochimica et Cosmochimica Acta, 206, 40-56. https://doi.org/10.1016/j.gca.2017.02.032
https://dspace.library.uu.nl/bitstream/handle/1874/351357/influence.pdf?sequence=1

Christianen, M. J. A., Middelburg, J. J., Holthuijsen, S. J., Jouta, J., Compton, T. J., van der Heide, T., Piersma, T., Sinninghe Damsté, J. S., van der Veer, H. W., Schouten, S., & Olff, H. (2017). Benthic primary producers are key to sustain the Wadden Sea food web: stable carbon isotope analysis at landscape scale. Ecology, 98(6), 1498-1512. https://doi.org/10.1002/ecy.1837
https://dspace.library.uu.nl/bitstream/handle/1874/352458/Benthic.pdf?sequence=1

Le Guitton, M., Soetaert, K., Sinninghe Damsté, J. S., & Middelburg, J. J. (2017). A seasonal study of particulate organic matter composition and quality along an offshore transect in the Southern North Sea. Estuarine, Coastal and Shelf Science, 188, 1-11. https://doi.org/10.1016/j.ecss.2017.02.002
https://dspace.library.uu.nl/bitstream/handle/1874/347782/seasonal.pdf?sequence=1

Kulichevskaya, I. S., Ivanova, A. A., Baulina, O. I., Rijpstra, W. I. C., Sinninghe Damsté, J. S., & Dedysh, S. N. (2017). Fimbriiglobus ruber gen. nov., sp. nov., a Gemmata-like planctomycete from Sphagnum peat bog and the proposal of Gemmataceae fam. nov. International Journal of Systematic and Evolutionary Microbiology, 67(2), 218-224. https://doi.org/10.1099/ijsem.0.001598

Kim, J.-J., Marjerrison, C. E., Cornish Shartau, S. L., Brady, A. L., Sharp, C. E., Rijpstra, W. I. C., Sinninghe Damsté, J. S., Schumann, P., Grasby, S. E., & Dunfield, P. F. (2017). Actinocrinis puniceicyclus gen. nov., sp. nov., a novel actinobacterium isolated from an acidic spring. International Journal of Systematic and Evolutionary Microbiology, 67(3), 602-609. https://doi.org/10.1099/ijsem.0.001667

Loomis, S. E., Russell, J. M., Verschuren, D., Morrill, C., De Cort, G., Sinninghe Damsté, J. S., Olago, D., Eggermont, H., Street-Perrott, F. A., & Kelly, M. A. (2017). The tropical lapse rate steepened during the Last Glacial Maximum. Science advances, 3(1), 1-7. https://doi.org/10.1126/sciadv.1600815
https://dspace.library.uu.nl/bitstream/handle/1874/348251/lapse.pdf?sequence=1

Rush, D., & Sinninghe Damsté, J. S. (2017). Lipids as paleomarkers to constrain the marine nitrogen cycle. Environmental Microbiology, 19(6), 2119-2132. https://doi.org/10.1111/1462-2920.13682
https://dspace.library.uu.nl/bitstream/handle/1874/351326/Lipids.pdf?sequence=1

Other output

Dearing Crampton-Flood, E. K. L. H., Peterse, F., Sinninghe Damste, J. S., Munsterman, D. K., & Donders, T. H. (2017). A terrestrial Pliocene-Pleistocene Temperature record from North-Western Europe. Abstract from 5th PAGES Open Sicence Meeting, Zaragoza, Spain.

2016

Scholarly publications

Warden, L. A., Kim, J. H., Zell, C. I., Vis, G. J., de Stigter, H., Bonnin, J., & Sinninghe Damsté, J. S. (2016). Examining the provenance of branched GDGTs in the Tagus River drainage basin and its outflow into the Atlantic Ocean over the Holocene to determine their usefulness for paleoclimate applications. Biogeosciences, 13(20), 5719-5738. https://doi.org/10.5194/bg-13-5719-2016
https://dspace.library.uu.nl/bitstream/handle/1874/347541/Examining.pdf?sequence=1

Warden, L. A., van der Meer, M. T. J., Moros, M., & Sinninghe Damsté, J. S. (2016). Sedimentary alkenone distributions reflect salinity changes in the Baltic Sea over the Holocene. Organic Geochemistry, 102, 30-44. https://doi.org/10.1016/j.orggeochem.2016.09.007
https://dspace.library.uu.nl/bitstream/handle/1874/347540/Sedimentary.pdf?sequence=1

Sobrinho, R. L., Bernardes, M. C., Abril, G., Kim, J. H., Zell, C. I., Mortillaro, J.-M., Meziane, T., Moreira-Turcq, P., & Sinninghe Damsté, J. S. (2016). Spatial and seasonal contrasts of sedimentary organic matter in floodplain lakes of the central Amazon basin. Biogeosciences, 13(2), 467-482. https://doi.org/10.5194/bg-13-467-2016
https://dspace.library.uu.nl/bitstream/handle/1874/347539/seasonal.pdf?sequence=1

Sinninghe Damsté, J. S. (2016). Spatial heterogeneity of sources of branched tetraethers in shelf systems: The geochemistry of tetraethers in the Berau River delta (Kalimantan, Indonesia). Geochmica et Cosmochimica Acta, 186, 13-31. https://doi.org/10.1016/j.gca.2016.04.033
https://dspace.library.uu.nl/bitstream/handle/1874/347537/Spatial.pdf?sequence=1

Salamanca, S., van Soelen, E. E., Teunissen van Manen, M. L., Flantua, S. G. A., Ventura Santos, R., Roddaz, M., Dantas, E. L., van Loon, E., Sinninghe Damsté, J. S., Kim, J. H., & Hoorn, C. (2016). Amazon forest dynamics under changing abiotic conditions in the early Miocene (Colombian Amazonia). Journal of Biogeography, 43(12), 2424-2437. https://doi.org/10.1111/jbi.12769
https://dspace.library.uu.nl/bitstream/handle/1874/347530/Amazon.pdf?sequence=1

Nieto-Moreno, V., Rohrmann, A., van der Meer, M. T. J., Sinninghe Damsté, J. S., Sachse, D., Tofelde, S., Niedermeyer, E. M., Strecker, M. R., & Mulch, A. (2016). Elevation-dependent changes in n-alkane δD and soil GDGTs across the South Central Andes. Earth and Planetary Science Letters, 453, 234-242. https://doi.org/10.1016/j.epsl.2016.07.049
https://dspace.library.uu.nl/bitstream/handle/1874/347529/Elevation_dependent.pdf?sequence=1

Moore, E. K., Hopmans, E. C., Rijpstra, W. I. C., Villanueva, L., & Sinninghe Damsté, J. S. (2016). Elucidation and identification of amino acid containing membrane lipids using liquid chromatography/high‐resolution mass spectrometry. Rapid Communications in Mass Spectrometry, 30(6), 739-750. https://doi.org/10.1002/rcm.7503

Kim, J. H., Villanueva, L., Zell, C. I., & Sinninghe Damsté, J. S. (2016). Biological source and provenance of deep-water derived isoprenoid tetraether lipids along the Portuguese continental margin. Geochmica et Cosmochimica Acta, 172, 177-204. https://doi.org/10.1016/j.gca.2015.09.010
https://dspace.library.uu.nl/bitstream/handle/1874/347528/Biological.pdf?sequence=1

Dessandier, P.-A., Bonnin, J., Kim, J. H., Bichon, S., Deflandre, B., Grémare, A., & Sinninghe Damsté, J. S. (2016). Impact of organic matter source and quality on living benthic foraminiferal distribution on a river-dominated continental margin: A study of the Portuguese margin. Journal of Geophysical Research, 121(6), 1689-1714. https://doi.org/10.1002/2015JG003231

De Jonge, C., Talbot, H. M., Bischoff, J., Stadnitskaia, A. N., Cherkashov, G., & Sinninghe Damsté, J. S. (2016). Bacteriohopanepolyol distribution in Yenisei River and Kara Sea suspended particulate matter and sediments traces terrigenous organic matter input and submerged permafrost. Geochmica et Cosmochimica Acta, 174, 85-101. https://doi.org/10.1016/j.gca.2015.11.008

De Jonge, C., Stadnitskaia, A. N., Cherkashov, G., & Sinninghe Damsté, J. S. (2016). Branched glycerol dialkyl glycerol tetraethers and crenarchaeol record post-glacial sea level rise in the Kara Sea (Arctic Ocean). Organic Geochemistry, 92, 42-54. https://doi.org/10.1016/j.orggeochem.2015.11.009
https://dspace.library.uu.nl/bitstream/handle/1874/347526/Glycerol.pdf?sequence=1

Sciscio, L., Tsikos, H., Roberts, D. L., Scott, L., van Breugel, Y., Sinninghe Damsté, J. S., Schouten, S., & Grocke, D. R. (2016). Miocene climate and vegetation changes in the Cape Peninsula, South Africa: evidence from biogeochemistry and palynology. Palaeogeography, Palaeoclimatology, Palaeoecology, 445, 124-137. https://doi.org/10.1016/j.palaeo.2015.12.014

Hopmans, E. C., Schouten, S., & Sinninghe Damsté, J. S. (2016). The effect of improved chromatography on GDGT based paleoproxies. Organic Geochemistry, 93, 1-6. https://doi.org/10.1016/j.orggeochem.2015.12.006
https://dspace.library.uu.nl/bitstream/handle/1874/347518/improved.pdf?sequence=1

Maat, D. S., Bale, N. J., Hopmans, E. C., Sinninghe Damsté, J. S., Schouten, S., & Brussaard, C. P. D. (2016). Increasing P-stress and viral infection impact lipid remodeling of picophytoplankter Micromonas pusilla. Biogeosciences, 13(5), 1667-1676. https://doi.org/10.5194/bg-13-1667-2016
https://dspace.library.uu.nl/bitstream/handle/1874/347514/Increasing.pdf?sequence=1

Johnson, T. C., Werne, J. P., Brown, E. T., Abbott, A., Berke, M., Steinman, B. A., Halbur, J., Contreras, S., Grosshuesch, S., Deino, C. A., Scholz, C. A., Lyons, R. P., Schouten, S., & Sinninghe Damsté, J. S. (2016). A progressively wetter climate in Southern East Africa over the past 1.3 million years. Nature, 537(7619), 220-224. https://doi.org/10.1038/nature19065
https://dspace.library.uu.nl/bitstream/handle/1874/347508/progressively.pdf?sequence=1

Rodrigo-Gámiz, M., Rampen, S. W., Schouten, S., & Sinninghe Damsté, J. S. (2016). The impact of oxic degradation on long chain alkyl diol distributions in Arabian Sea surface sediments. Organic Geochemistry, 100, 1-9. https://doi.org/10.1016/j.orggeochem.2016.07.003

Heinzelmann, S. M., Bale, N. J., Villanueva, L., Sinke-Schoen, D., Philippart, C. J. M., Sinninghe Damsté, J. S., Schouten, S., & van der Meer, M. T. J. (2016). Seasonal changes in the D/H ratio of fatty acids of pelagic microorganisms in the coastal North Sea. Biogeosciences, 13(19), 5527-5539. https://doi.org/10.5194/bg-13-5527-2016
https://dspace.library.uu.nl/bitstream/handle/1874/347505/Seasonal.pdf?sequence=1

Kandiano, E. S., van der Meer, M. T. J., Bauch, H. A., Helmke, J., Sinninghe Damsté, J. S., & Schouten, S. (2016). A cold and fresh ocean surface in the Nordic Seas during MIS 11: Significance for the future ocean. Geophysical Research Letters, 43(20), 10929-10937. https://doi.org/10.1002/2016GL070294
https://dspace.library.uu.nl/bitstream/handle/1874/347504/cold.pdf?sequence=1

de Bar, M. W., Dorhout, D., Hopmans, E. C., Rampen, S. W., Sinninghe Damsté, J. S., & Schouten, S. (2016). Constraints on the application of long chain diol proxies in the Iberian Atlantic margin. Organic Geochemistry, 101, 184-195. https://doi.org/10.1016/j.orggeochem.2016.09.005
https://dspace.library.uu.nl/bitstream/handle/1874/347078/constraints.pdf?sequence=1

Jung, M.-Y., Kim, J.-G., Sinninghe Damsté, J. S., Rijpstra, W. I. C., Madsen, E. L., Kim, S.-J., Hong, H., Si, O.-J., Kerou, M., Schleper, C., & Rhee, S.-K. (2016). A hydrophobic ammonia-oxidizing archaeon of the Nitrosocosmicus clade isolated from coal tar-contaminated sediment. Environmental Microbiology Reports, 8(6), 983-992. https://doi.org/10.1111/1758-2229.12477
https://dspace.library.uu.nl/bitstream/handle/1874/346257/hydrophobic.pdf?sequence=1

Sorokin, D. Y., Kublanov, I. V., Yakimov, M. M., Rijpstra, W. I. C., & Sinninghe Damsté, J. S. (2016). Halanaeroarchaeum sulfurireducens gen. nov., sp. nov., the first obligately anaerobic sulfur-respiring haloarchaeon, isolated from a hypersaline lake. International Journal of Systematic and Evolutionary Microbiology, 66(6), 2377-2381. https://doi.org/10.1099/ijsem.0.001041

Oshkin, I. Y., Belova, S. E., Danilova, O. V., Miroshnikov, K. K., Rijpstra, W. I. C., Sinninghe Damsté, J. S., Liesack, W., & Dedysh, S. N. (2016). Methylovulum psychrotolerans sp. nov., a coldadapted methanotroph from low-temperature terrestrial environments, and emended description of the genus Methylovulum. International Journal of Systematic and Evolutionary Microbiology, 66(6), 2417-2423. https://doi.org/10.1099/ijsem.0.001046

Kim, J.-G., Park, S.-J., Sinninghe Damsté, J. S., Schouten, S., Rijpstra, W. I. C., Jung, M.-Y., Kim, S.-J., Gwak, J.-H., Hong, H., Si, O.-J., Lee, S., Madsen, E. L., & Rhee, S.-K. (2016). Hydrogen peroxide detoxification is a key mechanism for growth of ammonia-oxidizing archaea. Proceedings of the National Academy of Sciences of the United States of America, 113(28), 7888-7893. https://doi.org/10.1073/pnas.1605501113
https://dspace.library.uu.nl/bitstream/handle/1874/346256/Hydrogen.pdf?sequence=1

Sorokin, D. Y., Rakitin, A. L., Gumerov, V. M., Beletsky, A. V., Sinninghe Damsté, J. S., Mardanov, A. V., & Ravin, N. V. (2016). Phenotypic and genomic properties of Chitinispirillum alkaliphilum gen. nov., sp. nov., a haloalkaliphilic anaerobic chitinolytic bacterium representing a novel class in the phylum fibrobacteres. Frontiers in Microbiology, 7, Article 407. https://doi.org/10.3389/fmicb.2016.00407
https://dspace.library.uu.nl/bitstream/handle/1874/346255/Phenotypic.pdf?sequence=1

Lipsewers, Y. A., Hopmans, E. C., Meysman, F. J. R., Sinninghe Damsté, J. S., & Villanueva, L. (2016). Abundance and diversity of denitrifying and anammox bacteria in seasonally hypoxic and sulfidic sediments of the saline lake Grevelingen. Frontiers in Microbiology, 7(OCT), 1-15. Article 1661. https://doi.org/10.3389/fmicb.2016.01661
https://dspace.library.uu.nl/bitstream/handle/1874/346254/9.pdf?sequence=1

Vellekoop, J., Esmeray-Senlet, S., Miller, K. G., Browning, J. V., Sluijs, A., van de Schootbrugge, B., Sinninghe Damsté, J. S., & Brinkhuis, H. (2016). Evidence for Cretaceous-Paleogene boundary bolide "impact winter" conditions from New Jersey, USA. Geology, 44(8), 619-622. https://doi.org/10.1130/G37961.1
https://dspace.library.uu.nl/bitstream/handle/1874/343214/Evidence.pdf?sequence=1

van Soelen, E. E., Ohkouchi, N., Suga, H., Sinninghe Damsté, J. S., & Reichart, G.-J. (2016). A late Holocene molecular hydrogen isotope record of the East Asian Summer Monsoon in Southwest Japan. Quaternary Research, 86(3), 287-294. https://doi.org/10.1016/j.yqres.2016.07.005

van Bree, L. G. J., Rijpstra, W. I. C., Al-Dhabi, N. A., Verschuren, D., Sinninghe Damste, J. S., & de Leeuw, J. W. (2016). Des-A-lupane in an East African lake sedimentary record as a new proxy for the stable carbon isotopic composition of C₃ plants. Organic Geochemistry, 101, 132-139. https://doi.org/10.1016/j.orggeochem.2016.09.003
https://dspace.library.uu.nl/bitstream/handle/1874/341520/Des_A_lupane_in_an_East_African_lake_sedimentary_record_as_a_new_proxy.pdf?sequence=1

Buckles, L. K., Verschuren, D., Weijers, J. W. H., Cocquyt, C., Blaauw, M., & Sinninghe Damsté, J. S. (2016). Interannual and (multi-)decadal variability in the sedimentary BIT index of Lake Challa, East Africa, over the past 2200 years: Assessment of the precipitation proxy. Climate of the Past, 12(5), 1243-1262. https://doi.org/10.5194/cp-12-1243-2016

Bale, N. J., Hopmans, E. C., Schoon, P. L., de Kluijver, A., Downing, J. A., Middelburg, J. J., Sinninghe Damsté, J. S., & Schouten, S. (2016). Impact of trophic state on the distribution of intact polar lipids in surface waters of lakes. Limnology and Oceanography, 61(3), 1065-1077. https://doi.org/10.1002/lno.10274
https://dspace.library.uu.nl/bitstream/handle/1874/334345/lno10274.pdf?sequence=1

Mao, J., Nierop, K. G. J., Rietkerk, M., Sinninghe Damsté, J. S., & Dekker, S. C. (2016). The influence of vegetation on soil water repellency-markers and soil hydrophobicity. Science of the Total Environment, 566–567, 608-620. https://doi.org/10.1016/j.scitotenv.2016.05.077
https://dspace.library.uu.nl/bitstream/handle/1874/334072/hydrophobicity.pdf?sequence=1

Svensson, E., Schouten, S., Hopmans, E. C., Middelburg, J. J., & Sinninghe Damste, J. (2016). Factors controlling the stable nitrogen isotopic composition (δ¹⁵N) of lipids in marine animals. PLoS One, 11(1), Article e0146321. https://doi.org/10.1371/journal.pone.0146321
https://dspace.library.uu.nl/bitstream/handle/1874/326570/Lipids.pdf?sequence=1

Other output

Dearing Crampton-Flood, E. K. L. H., Peterse, F., Munsterman, D. K., & Sinninghe Damste, J. S. (2016). A terrestrial Pliocene-Pleistocene temperature record from North-Western Europe. Geophysical Research Abstracts, 18, Article EGU2016-7408. http://meetingorganizer.copernicus.org/EGU2016/EGU2016-7408.pdf

van Bree, L., Peterse, F., De Crop, W., Verschuren, D., & Sinninghe Damste, J. S. (2016). Seasonal dynamics of brGDGT production in Lake Challa. Poster session presented at Organic Geochemistry Gordon Research Seminar, Holderness, Netherlands.

van Bree, L. G. J., Rijpstra, W. I. C., Peterse, F., Verschuren, D., Sinninghe Damste, J. S., & de Leeuw, J. W. (2016). Exploring new ways of using sedimentary des-A-triterpenoids for paleoenvironmental reconstructions. Poster session presented at NESSC day 2016, Veldhoven, Netherlands.

2015

Scholarly publications

Kulichevskaya, I. S., Ivanova, A. A., Suzina, N. E., Rijpstra, W. I. C., Sinninghe Damsté, J. S., & Dedysh, S. N. (2015). Paludisphaera borealis gen. nov., sp. nov., a hydrolytic planctomycete from northern wetlands, and the proposal of Isosphaeraceae fam. nov. International Journal of Systematic and Evolutionary Microbiology, 66, 837-844. https://doi.org/10.1099/ijsem.0.000799

Sollai, M., Hopmans, E. C., Schouten, S., Keil, R. G., & Sinninghe Damste, J. S. (2015). Intact polar lipids of Thaumarchaeota and anammox bacteria as indicators of N cycling in the eastern tropical North Pacific oxygen-deficient zone. Biogeosciences, 12(15), 4725-4737. https://doi.org/10.5194/bg-12-4725-2015
https://dspace.library.uu.nl/bitstream/handle/1874/325949/Thaumarchaeota.pdf?sequence=1

Heinzelmann, S. M., Villanueva, L., Sinke-Schoen, D., Sinninghe Damste, J. S., Schouten, S., & Van der Meer, M. T. J. (2015). Impact of metabolism and growth phase on the hydrogen isotopic composition of microbial fatty acids. Frontiers in Microbiology, 6(MAY), Article 408. https://doi.org/10.3389/fmicb.2015.00408
https://dspace.library.uu.nl/bitstream/handle/1874/325948/impact.pdf?sequence=1

Heinzelmann, S. M., Chivall, D., M'Boule, D., Sinke-Schoen, D., Villanueva, L., Sinninghe Damste, J. S., Schouten, S., & Van der Meer, M. T. J. (2015). Comparison of the effect of salinity on the D/H ratio of fatty acids of heterotrophic and photoautotrophic microorganisms. FEMS Microbiology Letters, 362(10), Article fnv065. https://doi.org/10.1093/femsle/fnv065
https://dspace.library.uu.nl/bitstream/handle/1874/339374/comparison.pdf?sequence=1

Sorokin, D. Y., Abbas, B., Merkel, A. Y., Rijpstra, W. I. C., Sinninghe Damste, J. S., Sukhacheva, M. V., & van Loosdrecht, M. C. M. (2015). Methanosalsum natronophilum sp. nov., and Methanocalculus alkaliphilus sp. nov., haloalkaliphilic methanogens from hypersaline soda lakes. International journal of systemic and evolutionary microbiology, 65(10), 3739-3745. https://doi.org/10.1099/ijsem.0.000488

Weber, Y., De Jonge, C., Rijpstra, W. I. C., Hopmans, E. C., Stadnitskaia, A. N., Schubert, C. J., Lehmann, M. F., Sinninghe Damste, J. S., & Niemann, H. (2015). Identification and carbon isotope composition of a novel branched GDGT isomer in lake sediments: Evidence for lacustrine branched GDGT production. Geochimica et Cosmochimica Acta, 154, 118-129. https://doi.org/10.1016/j.gca.2015.01.032
https://dspace.library.uu.nl/bitstream/handle/1874/395547/Identification_and_carbon_isotope.pdf?sequence=1

Moore, E. K., Villanueva, L., Hopmans, E. C., Rijpstra, W. I. C., Mets, A., Dedysh, S. N., & Sinninghe Damste, J. S. (2015). Abundant Trimenthylornithine Lipids and Specific Gene Sequences Are Indicative of Planctomycete Importance at the Oxic/Anoxic Interface in Sphagnum-Dominated Northern Wetlands. Applied and Environmental Microbiology, 81(18), 6333-6344. https://doi.org/10.1128/AEM.00324-15
https://dspace.library.uu.nl/bitstream/handle/1874/325947/Trimethylornithine.pdf?sequence=1

De Jonge, C., Stadnitskaia, A. N., Fedotov, A., & Sinninghe Damste, J. S. (2015). Impact of riverine suspended particulate matter on the branched glycerol dialkyl glycerol tetraether composition of lakes: The outflow of the Selenga River in Lake Baikal (Russia). Organic Geochemistry, 83-84, 241-252. https://doi.org/10.1016/j.orggeochem.2015.04.004
https://dspace.library.uu.nl/bitstream/handle/1874/329797/riverine.pdf?sequence=1

Moore, E. K., Hopmans, E. C., Rijpstra, W. I. C., Sánchez-Andrea, I., Villanueva, L., Wienk, H., Schoutsen, F., Stams, A. J. M., & Sinninghe Damsté, J. S. (2015). Lysine and novel hydroxylysine lipids in soil bacteria: amino acid membrane lipid response to temperature and pH in Pseudopedobacter saltans. Frontiers in Microbiology, 6, Article 637. https://doi.org/10.3389/fmicb.2015.00637
https://dspace.library.uu.nl/bitstream/handle/1874/325195/fmicb_06_00637.pdf?sequence=1

Vellekoop, J., Smit, J., van de Schootbrugge, B., Weijers, J. W. H., Galeotti, S., Sinninghe Damsté, J. S., & Brinkhuis, H. (2015). Palynological evidence for prolonged cooling along the Tunisian continental shelf following the K-Pg boundary impact. Palaeogeography, Palaeoclimatology, Palaeoecology, 426, 216-228. https://doi.org/10.1016/j.palaeo.2015.03.021
https://dspace.library.uu.nl/bitstream/handle/1874/323099/1522_main.pdf?sequence=1

Svensson, E., Schouten, S., Stam, A., Middelburg, J. J., & Sinninghe Damsté, J. S. (2015). Compound-specific stable isotope analysis of nitrogen-containing intact polar lipids. Rapid Communications in Mass Spectrometry, 29(23), 2263-2271. https://doi.org/10.1002/rcm.7393
https://dspace.library.uu.nl/bitstream/handle/1874/322694/Spectrometry.pdf?sequence=1

van der Meer, M. T. J., Benthien, A., French, K. L., Epping, E., Zondervan, I., Reichart, G. J., Bijma, J., Sinninghe Damsté, J. S., & Schouten, S. (2015). Large effect of irradiance on hydrogen isotope fractionation of alkenones in Emiliania huxleyi. Geochimica et Cosmochimica Acta, 160, 16-24. https://doi.org/10.1016/j.gca.2015.03.024
https://dspace.library.uu.nl/bitstream/handle/1874/321986/huxleyi.pdf?sequence=1

le Guitton, M., Soetaert, K., Sinninghe Damsté, J. S., & Middelburg, J. J. (2015). Biogeochemical consequences of vertical and lateral transport of particulate organic matter in the southern North Sea: A multiproxy approach. Estuarine, Coastal and Shelf Science, 165, 117-127. https://doi.org/10.1016/j.ecss.2015.09.010
https://dspace.library.uu.nl/bitstream/handle/1874/321148/multiproxy.pdf?sequence=1

van Helmond, N. A. G. M., Sluijs, A., Sinninghe Damsté, J. S., Reichart, G.-J., Voigt, S., Erbacher, J., Pross, J., & Brinkhuis, H. (2015). Freshwater discharge controlled deposition of Cenomanian–Turonian black shales on the NW European epicontinental shelf (Wunstorf, northern Germany). Climate of the Past, 11, 495-508. https://doi.org/10.5194/cp-11-495-2015
https://dspace.library.uu.nl/bitstream/handle/1874/310180/van_Helmond_et_al._2015.pdf?sequence=1

Vasiliev, I., Reichart, G.-J., Grothe, A., Sinninghe Damste, J., Krijgsman, W., Sangiorgi, F., Weijers, J., & van Roij, L. (2015). Recurrent phases of drought in the upper Miocene of the Black Sea region. Palaeogeography, Palaeoclimatology, Palaeoecology, 423, 18-31. https://doi.org/10.1016/j.palaeo.2015.01.020
https://dspace.library.uu.nl/bitstream/handle/1874/309278/1_s2.0_S0031018215000383_main.pdf?sequence=1

Kim, J.-H., Schouten, S., Rodrigo-Gámiz, M., Rampen, S., Marino, G., Huguet, C., Helmke, P., Buscail, R., Hopmans, E. C., Pross, J., Sangiorgi, F., Middelburg, J. B. M., & Sinninghe Damsté, J. S. (2015). Influence of deep-water derived isoprenoid tetraether lipids on the TEXH86 paleothermometer in the Mediterranean Sea. Geochimica et Cosmochimica Acta, 150, 125-141. https://doi.org/10.1016/j.gca.2014.11.017
https://dspace.library.uu.nl/bitstream/handle/1874/309842/1_s2.0_S0016703714006875_main_1.pdf?sequence=1

Villanueva, L., Schouten, S., & Sinninghe Damsté, J. S. (2015). Depth-related distribution of a key gene of the tetraether lipid biosynthetic pathway in marine Thaumarchaeota. Environmental Microbiology, 17(10), 3527-3539. https://doi.org/10.1111/1462-2920.12508

Other output

Dearing Crampton-Flood, E. K. L. H., Peterse, F., & Sinninghe Damste, J. S. (2015). Plioprox: reconstructing continental temperatures during the Mid-Pliocene Warm Period using branched glycerol dialkyl glycerol tetraethers. Abstract from International Meeting on Organic Geochemistry (IMOG), Praag, Czech Republic.

van Bree, L. G. J., Rijpstra, W. I. C., Peterse, F., Verschuren, D., Sinninghe Damste, J. S., & de Leeuw, J. (2015). Novel applications of sedimentary des-A-triterpenoid hydrocarbons in lakes for reconstruction of C3/C4-plant vegetation and chemocline stability. Abstract from International Meeting on Organic Geochemistry (IMOG), Praag, Czech Republic.

van Bree, L. G. J., Peterse, F., Sinninghe Damste, J. S., de Leeuw, J. W., Verschuren, D., & Rijpstra, W. I. C. (2015). Novel applications of sedimentary des-A-triterpenoid hydrocarbons in lakes for reconstruction of C3/C4-plant vegetation and chemocline stability.

van Bree, L. G. J., de Leeuw, J. W., Peterse, F., Sinninghe Damste, J. S., Rijpstra, W. I. C., & Verschuren, D. (2015). Novel applications of sedimentary des-A-triterpenoid hydrocarbons in lakes for reconstruction of C3/C4-plant vegetation and chemocline stability.

Dearing Crampton-Flood, E. K. L. H., Peterse, F., Sinninghe Damste, J. S., & Munsterman, D. (2015). Plioprox: reconstructing continental temperatures during the Mid-Pliocene Warm Period using branched glycerol dialkyl glycerol tetraethers. Poster session presented at International Meeting of Organic Geochemistry, Prague, Czech Republic.

Dearing Crampton-Flood, E. K. L. H., Peterse, F., & Sinninghe Damste, J. S. (2015). Plioprox: reconstructing continental temperatures during the Mid-Pliocene Warm Period using branched glycerol dialkyl glycerol tetraethers. Abstract from International Meeting of Organic Geochemistry, Prague, Czech Republic. http://imog2015.guarant.eu/imog-2015-book-of-abstracts.pdf

van Bree, L. G. J., Rijpstra, W. I. C., Peterse, F., Verschuren, D., Sinninghe Damste, J. S., & de Leeuw, J. W. (2015). Novel paleoproxy for C3-plant stable carbon-isotopic composition. Abstract from Plant Wax Conference, Ascona, Switzerland.

2014

Scholarly publications

Schouten, S., Villanueva, L., Hopmans, E. C., Van der Meer, M. T. J., & Sinninghe Damsté, J. S. (2014). Are Marine Group II Euryarchaeota significant contributors to tetraether lipids in the ocean? Proceedings of the National Academy of Sciences of the United States of America, 111(41), Article E4285. https://doi.org/10.1073/pnas.1416176111

Kulichevskaya, I. S., Suzina, N. E., Rijpstra, W. I. C., Sinninghe Damsté, J. S., & Dedysh, S. N. (2014). Paludibaculum fermentans gen. nov., sp. nov., a facultative anaerobe capable of dissimilatory iron reduction from subdivision 3 of the Acidobacteria. International Journal of Systematic and Evolutionary Microbiology, 64(PART 8), 2857-2864. https://doi.org/10.1099/ijs.0.066175-0

Mao, J., Nierop, K., Sinninghe Damsté, J. S., & Dekker, S. C. (2014). Roots induce stronger soil water repellency than leaf waxes. Geoderma, 232, 328-340. https://doi.org/10.1016/j.geoderma.2014.05.024

López-Rodríquez, C., Stadnitskaia, A., de Lange, G. J., Martínez-Ruíz, F., Comas, M., & Sinninghe Damsté, J. S. (2014). Origin of lipid biomarkers in mud volcanoes from the Alboran Sea, western Mediterranean. Biogeosciences, 11(12), 3187-3204. https://doi.org/10.5194/bg-11-3187-2014
https://dspace.library.uu.nl/bitstream/handle/1874/307483/2014.pdf?sequence=1

Rampen, S. W., Datema, M., Rodrigo-Gámiz, M., Schouten, S., Reichart, G.-J., & Sinninghe Damste, J. S. (2014). Sources and proxy potential of long chain alkyl diols in lacustrine environments. Geochimica et Cosmochimica Acta, 144, 59-71. https://doi.org/10.1016/j.gca.2014.08.033

Rampen, S. W., Willmott, V., Kim, J. H., Rodrigo-Gámiz, M., Uliana, E., Mollenhauer, G., Schefuß, E., Sinninghe Damsté, J. S., & Schouten, S. (2014). Evaluation of long chain 1,14-alkyl diols in marine sediments as indicators for upwelling and temperature. Organic Geochemistry, 76, 39-47. https://doi.org/10.1016/j.orggeochem.2014.07.012

Van Soelen, E. E., Lammers, J. M., Eglinton, T. I., Sinninghe Damsté, J. S., & Reichart, G. J. (2014). Unusual C₃₅ to C₃₈ alkenones in mid-Holocene sediments from a restricted estuary (Charlotte Harbor, Florida). Organic Geochemistry, 70, 20-28. https://doi.org/10.1016/j.orggeochem.2014.01.021

Rush, D., Jaeschke, A., Geenevasen, J. A. J., Tegelaar, E., Pureveen, J., Lewan, M. D., Schouten, S., & Sinninghe Damsté, J. S. (2014). Generation of unusual branched long chain alkanes from hydrous pyrolysis of anammox bacterial biomass. Organic Geochemistry, 76, 136-145. https://doi.org/10.1016/j.orggeochem.2014.08.002

Sinninghe Damsté, J. S., Rijpstra, W. I. C., Hopmans, E. C., Foesel, B. U., Wüst, P. K., Overmann, J., Tank, M., Bryant, D. A., Dunfield, P. F., Houghton, K., & Stott, M. B. (2014). Ether- and ester-bound iso-diabolic acid and other lipids in members of Acidobacteria subdivision 4. Applied and Environmental Microbiology, 80(17), 5207-5218. https://doi.org/10.1128/AEM.01066-14
https://dspace.library.uu.nl/bitstream/handle/1874/303473/5207.full.pdf?sequence=1

Kim, J.-H., Buscail, R., Fanget, A.-S., Eyrolle-Boyer, F., Bassetti, M.-A., Dorhout, D., Baas, M., Berné, S., & Sinninghe Damsté, J. S. (2014). Impact of river channel shifts on tetraether lipids in the RhÔne prodelta (NW Mediterranean): Implication for the BIT index as an indicator of palaeoflood events. Organic Geochemistry, 75, 99-108. https://doi.org/10.1016/j.orggeochem.2014.06.011

De Jonge, C., Stadnitskaia, A., Hopmans, E. C., Cherkashov, G., Fedotov, A., & Sinninghe Damsté, J. S. (2014). In situ produced branched glycerol dialkyl glycerol tetraethers in suspended particulate matter from the Yenisei River, Eastern Siberia. Geochimica et Cosmochimica Acta, 125, 476-491. https://doi.org/10.1016/j.gca.2013.10.031

Lengger, S. K., Lipsewers, Y. A., De Haas, H., Sinninghe Damsté, J. S., & Schouten, S. (2014). Lack of ¹³C-label incorporation suggests low turnover rates of thaumarchaeal intact polar tetraether lipids in sediments from the Iceland shelf. Biogeosciences, 11(2), 201-216. https://doi.org/10.5194/bg-11-201-2014
https://dspace.library.uu.nl/bitstream/handle/1874/303470/bg_11_201_2014.pdf?sequence=1

Kasper, S., Van Der Meer, M. T. J., Mets, A., Zahn, R., Sinninghe Damsté, J. S., & Schouten, S. (2014). Salinity changes in the Agulhas leakage area recorded by stable hydrogen isotopes of C₃₇ alkenones during Termination i and II. Climate of the Past, 10(1), 251-260. https://doi.org/10.5194/cp-10-251-2014
https://dspace.library.uu.nl/bitstream/handle/1874/303469/cp_10_251_2014.pdf?sequence=1

Weijers, J. W. H., Schefuß, E., Kim, J. H., Sinninghe Damsté, J. S., & Schouten, S. (2014). Constraints on the sources of branched tetraether membrane lipids in distal marine sediments. Organic Geochemistry, 72, 14-22. https://doi.org/10.1016/j.orggeochem.2014.04.011

Villanueva, L., Besseling, M., Rodrigo-Gámiz, M., Rampen, S. W., Verschuren, D., & Sinninghe Damsté, J. S. (2014). Potential biological sources of long chain alkyl diols in a lacustrine system. Organic Geochemistry, 68, 27-30. https://doi.org/10.1016/j.orggeochem.2014.01.001

Vellekoop, J., Sluijs, A., Smit, J., Schouten, S., Weijers, J. W. H., Sinninghe Damsté, J. S., & Brinkhuis, H. (2014). Rapid short-term cooling following the Chicxulub impact at the Cretaceous-Paleogene boundary. Proceedings of the National Academy of Sciences of the United States of America, 111(21), 7537-7541. https://doi.org/10.1073/pnas.1319253111
https://dspace.library.uu.nl/bitstream/handle/1874/303466/7537.full.pdf?sequence=1

Kool, D. M., Talbot, H. M., Rush, D., Ettwig, K., & Sinninghe Damsté, J. S. (2014). Rare bacteriohopanepolyols as markers for an autotrophic, intra-aerobic methanotroph. Geochimica et Cosmochimica Acta, 136, 114-125. https://doi.org/10.1016/j.gca.2014.04.002

Zell, C., Kim, J.-H., Hollander, D., Lorenzoni, L., Baker, P., Silva, C. G., Nittrouer, C., & Sinninghe Damsté, J. S. (2014). Sources and distributions of branched and isoprenoid tetraether lipids on the Amazon shelf and fan: Implications for the use of GDGT-based proxies in marine sediments. Geochimica et Cosmochimica Acta, 139, 293-312. https://doi.org/10.1016/j.gca.2014.04.038

Chivall, D., M'Boule, D., Sinke-Schoen, D., Sinninghe Damsté, J. S., Schouten, S., & Van der Meer, M. T. J. (2014). The effects of growth phase and salinity on the hydrogen isotopic composition of alkenones produced by coastal haptophyte algae. Geochimica et Cosmochimica Acta, 140, 381-390. https://doi.org/10.1016/j.gca.2014.05.043

Rush, D., Sinninghe Damsté, J. S., Poulton, S. W., Thamdrup, B., Garside, A. L., Acuña González, J., Schouten, S., Jetten, M. S. M., & Talbot, H. M. (2014). Anaerobic ammonium-oxidising bacteria: A biological source of the bacteriohopanetetrol stereoisomer in marine sediments. Geochimica et Cosmochimica Acta, 140, 50-64. https://doi.org/10.1016/j.gca.2014.05.014

Buckles, L. K., Weijers, J. W. H., Verschuren, D., & Sinninghe Damsté, J. S. (2014). Sources of core and intact branched tetraether membrane lipids in the lacustrine environment: Anatomy of Lake Challa and its catchment, equatorial East Africa. Geochimica et Cosmochimica Acta, 140, 106-126. https://doi.org/10.1016/j.gca.2014.04.042

De Jonge, C., Hopmans, E. C., Zell, C. I., Kim, J. H., Schouten, S., & Sinninghe Damsté, J. S. (2014). Occurrence and abundance of 6-methyl branched glycerol dialkyl glycerol tetraethers in soils: Implications for palaeoclimate reconstruction. Geochimica et Cosmochimica Acta, 141, 97-112. https://doi.org/10.1016/j.gca.2014.06.013

Lengger, S. K., Hopmans, E. C., Sinninghe Damsté, J. S., & Schouten, S. (2014). Impact of sedimentary degradation and deep water column production on GDGT abundance and distribution in surface sediments in the Arabian Sea: Implications for the TEX₈₆ paleothermometer. Geochimica et Cosmochimica Acta, 142, 386-399. https://doi.org/10.1016/j.gca.2014.07.013

Buckles, L. K., Weijers, J. W. H., Tran, X.-M., Waldron, S., & Sinninghe Damsté, J. S. (2014). Provenance of tetraether membrane lipids in a large temperate lake (Loch Lomond, UK): Implications for glycerol dialkyl glycerol tetraether (GDGT)-based palaeothermometry. Biogeosciences, 11(19), 5539-5563. https://doi.org/10.5194/bg-11-5539-2014
https://dspace.library.uu.nl/bitstream/handle/1874/303458/bg_11_5539_2014.pdf?sequence=1

Zell, C., Kim, J. H., Balsinha, M., Dorhout, D., Fernandes, C., Baas, M., & Sinninghe Damsté, J. S. (2014). Transport of branched tetraether lipids from the Tagus River basin to the coastal ocean of the Portuguese margin: Consequences for the interpretation of the MBT'/CBT paleothermometer. Biogeosciences, 11(19), 5637-5655. https://doi.org/10.5194/bg-11-5637-2014
https://dspace.library.uu.nl/bitstream/handle/1874/303457/bg_11_5637_2014.pdf?sequence=1

Louterbach, M., Roddaz, M., Bailleul, J., Antoine, P. O., Adnet, S., Kim, J. H., van Soelen, E., Parra, F., Gérard, J., Calderon, Y., Gagnaison, C., Sinninghe Damsté, J. S., & Baby, P. (2014). Evidences for a Paleocene marine incursion in southern Amazonia (Madre de Dios Sub-Andean Zone, Peru). Palaeogeography, Palaeoclimatology, Palaeoecology, 414, 451-471. https://doi.org/10.1016/j.palaeo.2014.09.027

van Bree, L. G. J., Rijpstra, W. I. C., Cocquyt, C., Al-Dhabi, N. A., Verschuren, D., Sinninghe Damste, J. S., & de Leeuw, J. W. (2014). Origin and palaeoenvironmental significance of C₂₅ and C₂₇n-alk-1-enes in a 25,000-year lake-sedimentary record from equatorial East Africa. Geochimica et Cosmochimica Acta, 145, 89-102. https://doi.org/10.1016/j.gca.2014.08.035

van Helmond, N. A. G. M., Ruvalcaba Baroni, I., Sluijs, A., Sinninghe Damste, J. S., & Slomp, C. P. (2014). Spatial extent and degree of oxygen depletion in the deep proto-North Atlantic basin during Oceanic Anoxic Event 2. Geochemistry, Geophysics, Geosystems, 15(11), 4254-4266. https://doi.org/10.1002/2014GC005528
https://dspace.library.uu.nl/bitstream/handle/1874/302873/99.pdf?sequence=1

Sorokin, D. Y., Gumerov, V. M., Rakitin, A. L., Beletsky, A. V., Sinninghe Damsté, J. S., Muyzer, G., Mardanov, A. V., & Ravin, N. V. (2014). Genome analysis of Chitinivibrio alkaliphilus gen. nov., sp. nov., a novel extremely haloalkaliphilic anaerobic chitinolytic bacterium from the candidate phylum Termite Group 3. Environmental Microbiology, 16(6), 1549-1565. https://doi.org/10.1111/1462-2920.12284

Sinninghe Damsté, J. S., Schouten, S., & Volkman, J. K. (2014). C27-C30 neohop-13(18)-enes and their saturated and aromatic derivatives in sediments: Indicators for diagenesis and water column stratification. Geochimica et Cosmochimica Acta, 133, 402-421. https://doi.org/10.1016/j.gca.2014.03.008

Svensson, E., Freitas, V., Schouten, S., Middelburg, J. J., van der Veer, H. W., & Sinninghe Damsté, J. S. (2014). Comparison of the stable carbon and nitrogen isotopic values of gill and white muscle tissue of fish. Journal of Experimental Marine Biology and Ecology, 457, 173-179. https://doi.org/10.1016/j.jembe.2014.04.014

van Helmond, N. A. G. M., Sluijs, A., Reichart, G.-J., Sinninghe Damsté, J. S., Slomp, C. P., & Brinkhuis, H. (2014). A perturbed hydrological cycle during Oceanic Anoxic Event 2. Geology, 42(2), 123-126. https://doi.org/10.1130/G34929.1
https://dspace.library.uu.nl/bitstream/handle/1874/313931/van_Helmond_et_al._2014_Geology.docx?sequence=1

Other output

Vellekoop, J., Smit, J., Esmeray, S., Miller, K. G., Browning, J. V., van de Schootbrugge, B., Sinninghe Damsté, J. S., & Brinkhuis, H. (2014). Unravelling volcanism and impact related environmental change in the latest Maastrichtian and early Danian. Rendiconti Online della Società Geologica Italiana, 31, 219-220. https://doi.org/10.3301/ROL.2014.130

van Helmond, N. A. G. M., Sluijs, A., Reichart, G. J., Sinninghe Damste, J. S., Slomp, C. P., & Brinkhuis, H. (2014). Employment of GDGTs in extreme climate event studies: the case of Oceanic Anoxic Event 2. Poster session presented at GDGT Workshop 2014, Texel, Netherlands.

van Helmond, N. A. G. M., Sluijs, A., Reichart, G. J., Sinninghe Damste, J. S., Slomp, C. P., & Brinkhuis, H. (2014). Employment of GDGTs in extreme climate event studies: the case of Oceanic Anoxic Event 2. Abstract from GDGT Workshop 2014, Texel, Netherlands.

Mao, J., Dekker, S., Nierop, K., Rietkerk, M., & Sinninghe Damste, J. (2014). A sequential extraction and hydrolysis approach to understand the chemical nature of soil water repellency. Abstract from 12th Nederlands Aardwetenschappelijk Congres, Utrecht.

2013

Scholarly publications

Schoon, P. L., de Kluijver, A., Middelburg, J. J., Downing, J. A., Sinninghe Damsté, J. S., & Schouten, S. (2013). Influence of lake water pH and alkalinity on the distribution of core and intact polar branched glycerol dialkyl glycerol tetraethers (GDGTs) in lakes. Organic Geochemistry, 60, 72-82. https://doi.org/10.1016/j.orggeochem.2013.04.015

Moore, E. K., Hopmans, E. C., Rijpstra, W. I. C., Villanueva, L., Dedysh, S. N., Kulichevskaya, I. S., Wienk, H. L. J., Schoutsen, F., & Sinninghe Damsté, J. S. (2013). Novel Mono-, Di-, and Trimethylornithine Membrane Lipids in Northern Wetland Planctomycetes. Applied and Environmental Microbiology, 79(22), 6874-6884. https://doi.org/10.1128/AEM.02169-13
https://dspace.library.uu.nl/bitstream/handle/1874/290413/6874.full.pdf?sequence=1

Schouten, S., Hopmans, E. C., Rosell-Melé, A., Pearson, A., Adam, P., Bauersachs, T., Bard, E., Bernasconi, S. M., Bianchi, T. S., Brocks, J. J., Carlson, L. T., Castañeda, I. S., Derenne, S., Selver, A. D., Dutta, K., Eglinton, T., Fosse, C., Galy, V., Grice, K., ... Sinninghe Damsté, J. S. (2013). An interlaboratory study of TEX86 and BIT analysis of sediments, extracts, and standard mixtures. Geochemistry, Geophysics, Geosystems, 14(12), 5263-5285. https://doi.org/10.1002/2013GC004904

Veuger, B., Pitcher, A., Schouten, S., Sinninghe Damsté, J. S., & Middelburg, J. J. (2013). Nitrification and growth of autotrophic nitrifying bacteria and Thaumarchaeota in the coastal North Sea. Biogeosciences, 10(3), 1775-1785. https://doi.org/10.5194/bg-10-1775-2013

van Soelen, E. E., Wagner-Cremer, F., Sinninghe Damsté, J. S., & Reichart, G.-J. (2013). Reconstructing tropical cyclone frequency using hydrogen isotope ratios of sedimentary n-alkanes in northern Queensland, Australia. Palaeogeography, Palaeoclimatology, Palaeoecology, 376, 66-72. https://doi.org/10.1016/j.palaeo.2013.02.019

Blaga, C. I., Reichart, G.-J., Lotter, A. F., Anselmetti, F. S., & Sinninghe Damsté, J. S. (2013). A TEX86 lake record suggests simultaneous shifts in temperature in Central Europe and Greenland during the last deglaciation. Geophysical Research Letters, 40(5), 948-953. https://doi.org/10.1002/grl.50181

Lammers, J. M., van Soelen, E. E., Donders, T. H., Wagner-Cremer, F., Sinninghe Damsté, J. S., & Reichart, G.-J. (2013). Natural Environmental Changes versus Human Impact in a Florida Estuary (Rookery Bay, USA). Estuaries and Coasts, 36(1), 149-157. https://doi.org/10.1007/s12237-012-9552-5

Schoon, P. L., Heilmann-Clausen, C., Pagh Schultz, B., Sluijs, A., Sinninghe Damsté, J. S., & Schouten, S. (2013). Recognition of Early Eocene global carbon isotope excursions using lipids of marine Thaumarchaeota. Earth and Planetary Science Letters, 373, 160-168. https://doi.org/10.1016/j.epsl.2013.04.037
https://dspace.library.uu.nl/bitstream/handle/1874/385691/Recognition.pdf?sequence=1

Vissers, E. W., Blaga, C. I., Bodelier, P. L. E., Muyzer, G., Schleper, C., Sinninghe Damsté, J. S., Tourna, M., & Laanbroek, H. J. (2013). Seasonal and vertical distribution of putative ammonia-oxidizing thaumarchaeotal communities in an oligotrophic lake. FEMS Microbiology Ecology, 83(2), 515-526. https://doi.org/10.1111/1574-6941.12013

Buckles, L. K., Villanueva, L., Weijers, J. W. H., Verschuren, D., & Sinninghe Damsté, J. S. (2013). Linking isoprenoidal GDGT membrane lipid distributions with gene abundances of ammonia-oxidizing Thaumarchaeota and uncultured crenarchaeotal groups in the water column of a tropical lake (Lake Challa, East Africa). Environmental Microbiology, 15(9), 2445-2462. https://doi.org/10.1111/1462-2920.12118

Other output

Donders, T. H., Verreussel, R., van Helmond, N. A. G. M., Weijers, J. W. H., Munsterman, D., Reichart, G.-J., Speijer, R., Sinninghe Damsté, J. S., & ten Veen, J. (2013). Land-sea correlation of the Pliocene-Pleistocene transition and early glacial - interglacial cycles in the southern North Sea. Abstract from 2nd workshop on Pliocene climate, Bristol, UK.

2012

Scholarly publications

Schouten, S., Pitcher, A., Hopmans, E. C., Villaneuva, L., van Bleijswijk, J., & Sinninghe Damsté, J. S. (2012). Intact polar and core glycerol dibiphytanyl glycerol tetraether lipids in the Arabian Sea oxygen minimum zone: I. Selective preservation and degradation in the water column and its consequences for the TEX86. Geochimica et Cosmochimica Acta, 98, 228-243. https://doi.org/10.1016/j.gca.2012.05.002

Lengger, S. K., Hopmans, E. C., Reichart, G.-J., Nierop, K. G. J., Sinninghe Damsté, J. S., & Schouten, S. (2012). Intact polar and core glycerol dibiphytanyl glycerol tetraether lipids in the Arabian Sea oxygen minimum zone. Part II: Selective preservation and degradation in sediments and consequences for the TEX 86. Geochimica et Cosmochimica Acta, 98, 244-258. https://doi.org/10.1016/j.gca.2012.05.003

Peterse, F., Schouten, S., van der Meer, J., van der Meer, M. T. J., & Sinninghe Damsté, J. S. (2012). Corrigendum to "Distribution of branched tetraether lipids in geothermally heated soils: Implications for the MBT/CBT temperature proxy" [Organic Geochem. 40, 201-205 (2009)]. Organic Geochemistry, 51, 11-12. https://doi.org/10.1016/j.orggeochem.2012.07.004

van Winden, J. F., Talbot, H. M., Kip, N., Reichart, G.-J., Pol, A., McNamara, N. P., Jetten, M. S. M., Op den Camp, H. J. M., & Sinninghe Damsté, J. S. (2012). Bacteriohopanepolyol signatures as markers for methanotrophic bacteria in peat moss. Geochimica et Cosmochimica Acta, 77, 52-61. https://doi.org/10.1016/j.gca.2011.10.026

Kim, J.-H., Zell, C., Moreira-Turcq, P., Pérez, M. A. P., Abril, G., Mortillaro, J.-M., Weijers, J. W. H., Meziane, T., & Sinninghe Damsté, J. S. (2012). Tracing soil organic carbon in the lower Amazon River and its tributaries using GDGT distributions and bulk organic matter properties. Geochimica et Cosmochimica Acta, 90, 163-180. https://doi.org/10.1016/j.gca.2012.05.014

van Winden, J. F., Talbot, H. M., de Vleeschouwer, F., Reichart, G.-J., & Sinninghe Damsté, J. S. (2012). Variation in methanotroph-related proxies in peat deposits from Misten Bog, Hautes-Fagnes, Belgium. Organic Geochemistry, 53, 73-79. https://doi.org/10.1016/j.orggeochem.2012.07.001

Sinninghe Damsté, J. S. (2012). Erratum to J.S. Sinninghe Damsté, J. Ossebaar, B. Abbas, S. Schouten, and D. Verschuren (2009) " Fluxes and distribution of tetraether lipids in an equatorial African lake: Constraints on the application of the TEX 86 palaeothermometer and BIT index in lacustrine settings" , Geochimica et Cosmochimica Acta 73, 4232-4249. Geochimica et Cosmochimica Acta, 77, 600-602. https://doi.org/10.1016/j.gca.2011.11.005

Peterse, F., van der Meer, J., Schouten, S., Weijers, J. W. H., Fierer, N., Jackson, R. B., Kim, J.-H., & Sinninghe Damsté, J. S. (2012). Revised calibration of the MBT-CBT paleotemperature proxy based on branched tetraether mebrane lipids in surface soils. Geochimica et Cosmochimica Acta, 96, 215-229. https://doi.org/10.1016/j.gca.2012.08.011

Tierney, J. E., Schouten, S., Pitcher, A., Hopmans, E. C., & Sinninghe Damsté, J. S. (2012). Core and intact polar glycerol dialkyl glycerol tetraethers (GDGTs) in Sand Pond, Warwick, Rhode Island (USA): Insights into the origin of lacustrine GDGTs. Geochimica et Cosmochimica Acta, 77, 561-581. https://doi.org/10.1016/j.gca.2011.10.018

Schouten, S., Rijpstra, W. I. C., Durisch-Kaiser, E., Schubert, C. J., & Sinninghe Damste, J. S. (2012). Distribution of glycerol dialkyl glycerol tetraether lipids in the water column of Lake Tanganyika. Organic Geochemistry, 53, 34-37. https://doi.org/10.1016/j.orggeochem.2012.01.009

van Winden, J. F., Reichart, G.-J., Niall, P., McNamara, A. B., & Sinninghe Damsté, J. S. (2012). Temperature-induced increase in methane release from peat bogs: A mesocosm experiment. PLoS One, 7(6), Article e39614. https://doi.org/10.1371/journal.pone.0039614

van Soelen, E. E., Brooks, G. R., Larson, R. A., Sinninghe Damsté, J. S., & Reichart, G.-J. (2012). Mid- to late-Holocene coastal environmental changes in southwest Florida, USA. The Holocene, 22(8), 929-938. https://doi.org/10.1177/0959683611434226

Sinninghe Damsté, J. S., Ossebaar, J., Schouten, S., & Verschuren, D. (2012). Distribution of tetraether lipids in the 25-ka sedimentary record of Lake Challa: extracting reliable TEX86 and MBT/CBT paleotemperatures from an equatorial African lake. Quaternary Science Reviews, 50, 43-54. https://doi.org/10.1016/j.quascirev.2012.07.001

van Bentum, E. C., Reichart, G.-J., Forster, A., & Sinninghe Damsté, J. S. (2012). Latitudinal differences in the amplitude of the OAE-2 carbon isotopic excursion: PCO2 and paleoproductivity. Biogeosciences, 9(2), 717-731. https://doi.org/10.5194/bg-9-717-2012

Woltering, M., Werne, J. P., Kish, J. L., Hicks, R., Sinninghe Damsté, J. S., & Schouten, S. (2012). Vertical and temporal variability in concentration and distribution of thaumarchaeotal tetraether lipids in Lake Superior and the implications for the application of the TEX86 temperature proxy. Geochimica et Cosmochimica Acta, 87, 136-153. https://doi.org/10.1016/j.gca.2012.03.024

Niemann, H., Stadnitskaia, A., Wirth, S. B., Gilli, A., Anselmetti, F. S., Sinninghe Damsté, J. S., Schouten, S., Hopmans, E. C., & Lehmann, M. F. (2012). Bacterial GDGTs in Holocene sediments and catchment soils of a high Alpine lake: application of the MBT/CBT-paleothermometer. Climate of the Past, 8, 889-906. https://doi.org/10.5194/cp-8-889-2012

van Bentum, E. C., Reichart, G.-J., & Sinninghe Damsté, J. S. (2012). Organic matter provenance, palaeoproductivity and bottom water anoxia during the Cenomanian/Turonian oceanic anoxic event in the Newfoundland Basin (northern proto North Atlantic Ocean). Organic Geochemistry, 50, 11-18. https://doi.org/10.1016/j.orggeochem.2012.05.013

Loomis, S. E., Russell, J. M., Ladd, B., Street-Perrott, F. A., & Sinninghe Damsté, J. S. (2012). Calibration and application of the branched GDGT proxy on East African lake sediments. Earth and Planetary Science Letters, 357-358, 277-288. https://doi.org/10.1016/j.epsl.2012.09.031

Other output

van Helmond, N. A. G. M., Sluijs, A., Reichart, G. J., Sinninghe Damste, J. S., Slomp, C. P., & Brinkhuis, H. (2012). Intensified hydrologic cycle and increased marine productivity during Oceanic Anoxic Event 2. Abstract from AGU Fall Meeting 2012, San Francisco, California, United States.

van Helmond, N. A. G. M., Sluijs, A., Reichart, G. J., Sinninghe Damste, J. S., Slomp, C. P., & Brinkhuis, H. (2012). The Cenomanian-Turonian Boundary Event (CTBE) of the New Jersey coastal plain: New insights from palynology and geochemistry.

de Jong, L. M., Nierop, K. G. J., Jilbert, T., Reichart, G.-J., Sinninghe Damsté, J. S., & Slomp, C. P. (2012). Changes in bottom water redox and productivity in the Bothnian Sea and Baltic Proper over the Holocene. Poster session presented at Poster.

2011

Scholarly publications

Peterse, F., Hopmans, E. C., Schouten, S., Mets, A., Rijpstra, W. I. C., & Sinninghe Damsté, J. S. (2011). Identification and distribution of intact polar branched tetraether lipids in peat and soil. Organic Geochemistry, 42(9), 1007-1015. https://doi.org/10.1016/j.orggeochem.2011.07.006

Loomis, S. E., Russell, J. M., & Sinninghe Damsté, J. S. (2011). Distributions of branched GDGTs in soils and lake sediments from western Uganda: Implications for a lacustrine paleothermometer. Organic Geochemistry, 42(7), 739-751. https://doi.org/10.1016/j.orggeochem.2011.06.004

Woltering, M., Johnson, T. C., Werne, J. P., Schouten, S., & Sinninghe Damsté, J. S. (2011). Late Pleistocene temperature history of Southeast Africa: A TEX(86) temperature record from Lake Malawi. Palaeogeography, Palaeoclimatology, Palaeoecology, 303(1-4), 93-102. https://doi.org/10.1016/j.palaeo.2010.02.013

Boere, A. C., Rijpstra, W. I. C., de Lange, G. J., Malinverno, E., Sinninghe Damsté, J. S., & Coolen, M. J. L. (2011). Exploring preserved fossil dinoflagellate and haptophyte DNA signatures to infer ecological and environmental changes during deposition of sapropel S1 in the eastern Mediterranean. Paleoceanography, 26, art. PA2204. Article PA2204. https://doi.org/10.1029/2010PA001948

Weijers, J. W. H., Bernhardt, B., Peterse, F., Werne, J. P., Dungait, J. A. J., Schouten, S., & Sinninghe Damsté, J. S. (2011). Absence of seasonal patterns in MBT-CBT indices in mid-latitude soils. Geochimica et Cosmochimica Acta, 75(11), 3179-3190. https://doi.org/10.1016/j.gca.2011.03.015

Schoon, P. L., Sluijs, A., Sinninghe Damsté, J. S., & Schouten, S. (2011). Stable carbon isotope patterns of marine biomarker lipids in the Arctic Ocean during Eocene Thermal Maximum 2. Paleoceanography, 26, PA3215. https://doi.org/10.1029/2010PA002028
https://dspace.library.uu.nl/bitstream/handle/1874/385793/Schoon_et_al_2011_Paleoceanography.pdf?sequence=1

Rampen, S. W., Schouten, S., & Sinninghe Damsté, J. S. (2011). Occurrence of long chain 1,14-diols in Apedinella radians. Organic Geochemistry, 42(5), 572-574. https://doi.org/10.1016/j.orggeochem.2011.03.009

Pitcher, A., Villanueva, L., Hopmans, E. C., Schouten, S., Reichart, G.-J., & Sinninghe Damsté, J. S. (2011). Niche segregation of ammonia-oxidizing archaea and anammox bacteria in the Arabian Sea oxygen minimum zone. The ISME Journal, 62(3), 655-668. https://doi.org/10.1038/ismej.2011.60

Peterse, F., Prins, M. A., Beets, C. J., Troelstra, S. R., Zheng, H., Gu, Z., Schouten, S., & Sinninghe Damsté, J. S. (2011). Decoupled warming and monsoon precipitation in East Asia over the last deglaciation. Earth and Planetary Science Letters, 301(1-2), 256-264. https://doi.org/10.1016/j.epsl.2010.11.010

Kim, J.-H., Peterse, F., Willmott, V., Klitgaard Kristensen, D., Baas, M., Schouten, S., & Sinninghe Damsté, J. S. (2011). Large ancient organic matter contributions to Arctic marine sediments (Svalbard). Limnology and Oceanography, 56(4), 1463-1474. https://doi.org/10.4319/lo.2011.56.4.1463

Kip, N., Ouyang, W. J., van Winden, J. F., Raghoebarsing, A., van Niftrik, L., Pol, A., Pan, Y., Bodrossy, L., van Donselaar, E. G., Reichart, G.-J., Jetten, M. S. M., Sinninghe Damsté, J. S., & Op den Camp, H. J. M. (2011). Detection, isolation, and characterization of acidophilic methanotrophs from Sphagnum mosses. Applied and Environmental Microbiology, 77(16), 5643-5654. https://doi.org/10.1128/AEM.05017-11

Tierney, J. E., Russell, J. M., Sinninghe Damsté, J. S., Huang, Y. S., & Verschuren, D. (2011). Late Quaternary behavior of the East African monsoon and the importance of the Congo Air Boundary. Quaternary Science Reviews, 30(7-8), 798-807. https://doi.org/10.1016/j.quascirev.2011.01.017

Ruhl, M., Bonis, N. R., Reichart, G.-J., Sinninghe Damsté, J. S., & Kürschner, W. M. (2011). Atmospheric carbon injection linked to end-Triassic mass extinction. Science, 333(6041), 430-434. https://doi.org/10.1126/science.1204255

Sinninghe Damsté, J. S., Verschuren, D., Ossebaar, J., Blokker, J., van Houten, R., van der Meer, M. T. J., Plessen, B., & Schouten, S. (2011). A 25,000-year record of climate-induced changes in lowland vegetation of eastern equatorial Africa revealed by the stable carbon-isotopic composition of fossil plant leaf waxes. Earth and Planetary Science Letters, 302(1-2), 236-246. https://doi.org/10.1016/j.epsl.2010.12.025

Sinninghe Damsté, J. S., Rijpstra, W. I. C., Hopmans, E. C., Weijers, J. W. H., Foesel, B. U., Overmann, J., & Dedysh, S. N. (2011). 13,16-Dimethyl octacosanedioic acid (iso-diabolic acid), a common membrane-spanning lipid of Acidobacteria subdivisions 1 and 3. Applied and Environmental Microbiology, 77(12), 4147-4154. https://doi.org/10.1128/AEM.00466-1

Weijers, J. W. H., Lim, K. L. H., Aquilina, A., Sinninghe Damsté, J. S., & Pancost, R. D. (2011). Biogeochemical controls on glycerol dialkyl glycerol tetraether lipid distributions in sediments characterized by diffusive methane flux. Geochemistry, Geophysics, Geosystems, 12, art. Q10010. Article Q10010. https://doi.org/10.1029/2011GC003724

Blaga, C. I., Reichart, G.-J., Vissers, E. W., Lotter, A. F., Anselmetti, F. S., & Sinninghe Damsté, J. S. (2011). Seasonal changes in glycerol dialkyl glycerol tetraether concentrations and fluxes in a perialpine lake: Implications for the use of the TEX86 and BIT proxies. Geochimica et Cosmochimica Acta, 75(21), 6416-6428. https://doi.org/10.1016/j.gca.2011.08.016

Wolff, C., Haug, G. H., Timmermann, A., Sinninghe Damsté, J. S., Brauer, A., Sigman, D. M., Cane, M. A., & Verschuren, D. (2011). Reduced interannual rainfall variability in east Africa during the last ice age. Science, 333(6043), 743-747. https://doi.org/10.1126/science.1203724

Weijers, J. W. H., Steinmann, P., Hopmans, E. C., Schouten, S., & Sinninghe Damsté, J. S. (2011). Bacterial tetraether membrane lipids in peat and coal: Testing the MBT-CBT temperature proxy for climate reconstruction. Organic Geochemistry, 42(5), 477-486. https://doi.org/10.1016/j.orggeochem.2011.03.013

Powers, L. A., Johnson, T. C., Werne, J. P., Castaneda, I. S., Hopmans, E. C., Sinninghe Damsté, J. S., & Schouten, S. (2011). Organic geochemical records of environmental variability in Lake Malawi during the last 700 years, Part I: The TEX(86) temperature record. Palaeogeography, Palaeoclimatology, Palaeoecology, 303(1-4), 133-139. https://doi.org/10.1016/j.palaeo.2010.09.006

van Geel, B., Gelorini, V., Lyaruu, A., Aptroot, A., Rucina, S., Marchant, R., Sinninghe Damsté, J. S., & Verschuren, D. (2011). Diversity and ecology of tropical African fungal spores from a 25,000-year palaeoenvironmental record in southeastern Kenya. Review of Palaeobotany and Palynology, 164(3-4), 174-190. https://doi.org/10.1016/j.revpalbo.2011.01.002

Boere, A. C., Rijpstra, W. I. C., de Lange, G. J., Sinninghe Damsté, J. S., & Coolen, M. J. L. (2011). Preservation potential of ancient plankton DNA in Pleistocene marine sediments. Geobiology, 9(5), 377-393. https://doi.org/10.1111/j.1472-4669.2011.00290.x

2010

Scholarly publications

Castaneda, I. S., Schefuss, E., Paetzold, J., Damste, J. S. S., Weldeab, S., & Schouten, S. (2010). Millennial-scale sea surface temperature changes in the eastern Mediterranean (Nile River Delta region) over the last 27,000 years. Paleoceanography, 25, Article PA1208. https://doi.org/10.1029/2009PA001740

Pitcher, A., Rychlik, N., Hopmans, E. C., Spieck, E., Rijpstra, W. I. C., Ossebaar, J., Schouten, S., Wagner, M., & Damste, J. S. S. (2010). Crenarchaeol dominates the membrane lipids of Candidatus Nitrososphaera gargensis, a thermophilic Group I. 1b Archaeon. ISME Journal, 4(4), 542-552. https://doi.org/10.1038/ismej.2009.138

van der Meer, M. T. J., Klatt, C. G., Wood, J., Bryant, D. A., Bateson, M. M., Lammerts, L., Schouten, S., Damste, J. S. S., Madigan, M. T., & Ward, D. M. (2010). Cultivation and Genomic, Nutritional, and Lipid Biomarker Characterization of Roseiflexus Strains Closely Related to Predominantly In Situ Populations Inhabiting Yellowstone Hot Spring Microbial Mats. Journal of Bacteriology, 192(12), 3033-3042. https://doi.org/10.1128/JB.01610-09

Bijl, P. K., Houben, A. J. P., Schouten, S., Bohaty, S. M., Sluijs, A., Reichart, G.-J., Damste, J. S. S., & Brinkhuis, H. (2010). Parallel trends in Middle Eocene temperatures and atmospheric carbon dioxide concentration? Geochimica et Cosmochimica Acta, 74(12), A90-A90.

Ballantyne, A. P., Greenwood, D. R., Damste, J. S. S., Csank, A. Z., Eberle, J. J., & Rybczynski, N. (2010). Significantly warmer Arctic surface temperatures during the Pliocene indicated by multiple independent proxies. Geology, 38(7), 603-606. https://doi.org/10.1130/G30815.1

Luecker, S., Wagner, M., Maixner, F., Pelletier, E., Koch, H., Vacherie, B., Rattei, T., Damste, J. S. S., Spieck, E., Le Paslier, D., & Daims, H. (2010). A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria. Proceedings of the National Academy of Sciences of the United States of America, 107(30), 13479-13484. https://doi.org/10.1073/pnas.1003860107

Balk, M., Mehboob, F., van Gelder, A. H., Rijpstra, W. I. C., Damste, J. S. S., & Stams, A. J. M. (2010). (Per)chlorate reduction by an acetogenic bacterium, Sporomusa sp., isolated from an underground gas storage. Applied Microbiology and Biotechnology, 88(2), 595-603. https://doi.org/10.1007/s00253-010-2788-8

Bauersachs, T., Schouten, S., Compaore, J., Stal, L. J., & Damste, J. S. S. (2010). Occurrence of C35-C45 polyprenols in filamentous and unicellular cyanobacteria. Organic Geochemistry, 41(9), 867-870. https://doi.org/10.1016/j.orggeochem.2010.04.018

Chevalier, N., Bouloubassi, I., Stadnitskaia, A., Taphanel, M.-H., Lorre, A., Sinninghe Damsté, J., & Pierre, C. (2010). Distributions and carbon isotopic compositions of lipid biomarkers in authigenic carbonate crusts from the Nordic margin (Norwegian Sea). Organic Geochemistry, 41(9), 885-890. https://doi.org/10.1016/j.orggeochem.2010.03.012

Mutterlose, J., Malkoc, M., Schouten, S., Damste, J. S. S., & Forster, A. (2010). TEX86 and stable δ18O paleothermometry of early Cretaceous sediments: Implications for belemnite ecology and paleotemperature proxy application. Earth and Planetary Science Letters, 298(3-4), 286-298. https://doi.org/10.1016/j.epsl.2010.07.043

Park, B.-J., Park, S.-J., Yoon, D.-N., Schouten, S., Damste, J. S. S., & Rhee, S.-K. (2010). Cultivation of Autotrophic Ammonia-Oxidizing Archaea from Marine Sediments in Coculture with Sulfur-Oxidizing Bacteria. Applied and Environmental Microbiology, 76(22), 7575-7587. https://doi.org/10.1128/AEM.01478-10

dos Santos, R. A. L., Prange, M., Castaneda, I. S., Schefuss, E., Mulitza, S., Schulz, M., Niedermeyer, E. M., Damste, J. S. S., & Schouten, S. (2010). Glacial-interglacial variability in Atlantic meridional overturning circulation and thermocline adjustments in the tropical North Atlantic. Earth and Planetary Science Letters, 300(3-4), 407-414. https://doi.org/10.1016/j.epsl.2010.10.030

Tierney, J. E., Russell, J. M., Eggermont, H., Hopmans, E. C., Verschuren, D., & Sinninghe Damsté, J. S. (2010). Environmental controls on branched tetraether lipid distributions in tropical East African lake sediments. Geochimica et Cosmochimica Acta, 74(17), 4902-4918.

Bendle, J. A., Weijers, J. W. H., Maslin, M. A., Sinninghe Damsté, J. S., Schouten, S., Hopmans, E. C., Boot, C. S., & Pancrost, R. D. (2010). Major changes in glacial and Holocene terrestrial temperatures and sources of organic carbon recorded in the Amazon fan by tetraether lipids. Geochemistry, Geophysics, Geosystems, 11(12), Q12007-doi:10.1029/2010GC003308. https://doi.org/10.1029/2010GC003308

Damste, J. S. S., van Bentum, E. C., Reichart, G.-J., Pross, J., & Schouten, S. (2010). A CO2 decrease-driven cooling and increased latitudinal temperature gradient during the mid-Cretaceous Oceanic Anoxic Event 2. Earth and Planetary Science Letters, 293(1-2), 97-103. https://doi.org/10.1016/j.epsl.2010.02.027

Bauersachs, T., Speelman, E. N., Hopmans, E. C., Reichart, G.-J., Schouten, S., & Sinninghe Damsté, J. S. (2010). Fossilized glycolipids reveal past oceanic N2 fixation by heterocystous cyanobacteria. Proceedings of the National Academy of Sciences of the United States of America, 107(45), 19190-19194. https://doi.org/10.1073/pnas.1007526107
https://dspace.library.uu.nl/bitstream/handle/1874/433960/bauersachs-et-al-2010-fossilized-glycolipids-reveal-past-oceanic-n2-fixation-by-heterocystous-cyanobacteria.pdf?sequence=1

Bijl, P. K., Houben, A. J. P., Schouten, S., Bohaty, S. M., Sluijs, A., Reichart, G.-J., Damste, J. S. S., & Brinkhuis, H. (2010). Transient Middle Eocene atmospheric CO2 and temperature variations. Science, 330(6005), 819-821. https://doi.org/10.1126/science.1193654
https://dspace.library.uu.nl/bitstream/handle/1874/385803/Transient_Middle_Eocene.pdf?sequence=1

Jaeschke, A., Abbas, B., Zabel, M., Hopmans, E. C., Schouten, S., & Sinninghe Damsté, J. S. (2010). Molecular evidence for anaerobic ammonium-oxidizing (anammox) bacteria in continental shelf and slope sediments off northwest Africa. Limnology and Oceanography, 55(1), 365-376.

Rattray, J. E., van de Vossenberg, J., Jaeschke, A., Hopmans, E. C., Wakeham, S. G., Lavik, G., Kuypers, M. M. M., Strous, M., Jetten, M. S. M., Schouten, S., & Sinninghe Damsté, J. S. (2010). Impact of temperature on ladderane lipid distribution in anammox bacteria. Applied and Environmental Microbiology, 76(5), 1596-1603. https://doi.org/10.1128/AEM.01796-09

Kim, J.-H., Zarzycka, B., Buscail, R., Peterse, F., Bonnin, J., Ludwig, W., Schouten, S., & Sinninghe Damsté, J. S. (2010). Contribution of river-borne soil organic carbon to the Gulf of Lions (NW Mediterranean). Limnology and Oceanography, 55(2), 507-518. https://doi.org/10.4319/lo.2009.55.2.0507

Powers, L., Werne, J. P., Vanderwoude, A. J., Sinninghe Damsté, J. S., Hopmans, E. C., & Schouten, S. (2010). Applicability and calibration of the TEX86 paleothermometer in lakes. Organic Geochemistry, 41(4), 404-413. https://doi.org/10.1016/j.orggeochem.2009.11.009

van Winden, J. F., Kip, N., Reichart, G.-J., Jetten, M. S. M., op den Camp, H. J. M., & Sinninghe Damsté, J. S. (2010). Lipids of symbiotic methane-oxidizing bacteria in peat moss studied using stable carbon isotopic-labelling. Organic Geochemistry, 41, 1040-1044.

Blaga, C. I., Reichart, G.-J., Schouten, S., Lotter, A. F., Werne, J. P., Kosten, S., Mazzeo, N., Lacerot, G., & Sinninghe Damste, J. S. (2010). Branched glycerol dialkyl glycerol tetraethers in lake sediments: Can they be used as temperature and pH proxies? Organic Geochemistry, 41(11), 1225-1234.

Rampen, S. W., Abbas, B. A., Schouten, S., & Sinninghe Damsté, J. S. (2010). A comprehensive study of sterols in marine diatoms (Bacillariophyta): Implications for their use as tracers for diatom productivity. Limnology and Oceanography, 55(1), 91-105,.

Willmott, V., Rampen, S. W., Domack, E., Canals, M., Sinninghe Damsté, J. S., & Schouten, S. (2010). Holocene changes in Proboscia diatom productivity in shelf waters of the north-western Antarctic Peninsula. Antarctic Science, 22(1), 3-10. https://doi.org/10.1017/S095410200999037X

Schouten, S., Middelburg, J. J., Hopmans, E. C., & Sinninghe Damsté, J. S. (2010). Fossilization and degradation of intact polar lipids in deep subsurface sediments: A theoretical approach. Geochimica et Cosmochimica Acta, 74, 3806-3814.

Kim, J.-H., van der Meer, J., Schouten, S., Helmke, P., Willmott, V., Sangiorgi, F., Koç, N., Hopmans, E. C., & Sinninghe Damsté, J. S. (2010). New indices and calibrations derived from the distribution of crenarchaeal isoprenoid tetraether lipids: Implications for past sea surface temperature reconstructions. Geochimica et Cosmochimica Acta, 74(16), 4639-4654.

Speelman, E. N., Sewall, J. O., Noone, D., Huber, M., von der Heydt, A. S., Sinninghe Damsté, J. S., & Reichart, G.-J. (2010). Modeling the influence of a reduced equator-to-pole sea surface temperature gradient on the distribution of water isotopes in the Early/Middle Eocene. Earth and Planetary Science Letters, 298(1-2), 57-65.

van Soelen, E. E., Lammertsma, E. I., Cremer, H., Donders, T. H., Sangiorgi, F., Brooks, G. R., Larson, R. A., Sinninghe Damsté, J. S., Wagner-Cremer, F., & Reichart, G.-J. (2010). Late Holocene sea-level rise in Tampa Bay: Integrated reconstruction using biomarkers, pollen, organic-walled dinoflagellate cysts, and diatoms. Estuarine, Coastal and Shelf Science, 86(2), 216-224.

Peterse, F., Nicol, G. W., Schouten, S., & Sinninghe Damsté, J. S. (2010). Influence of soil pH on the abundance and distribution of core and intact polar lipid-derived branched GDGTs in soil. Organic Geochemistry, 41(10), 1171-1175. https://doi.org/10.1016/j.orggeochem.2010.07.004

Kip, N., van Winden, J. F., Pan, Y., Bodrossy, L., Reichart, G.-J., Smolders, A. J. P., Jetten, M. S. M., Sinninghe Damsté, J. S., & op den Camp, H. J. M. (2010). Global prevalence of methane oxidation by symbiotic bacteria in peat-moss ecosystems. Nature Geoscience, 3, 617-621, doi:10.1038/ngeo939.

Popularising publications

Reichart, G.-J., & Sinninghe Damsté, J. S. (2010). Extreme Global Warming In The Ancient Past. Space Daily.

Reichart, G.-J., & Sinninghe Damsté, J. S. (2010). Earth witnessed extreme global warming around 40 million years ago. Hindustan Times.

Reichart, G.-J., & Sinninghe Damsté, J. S. (2010). Nieuw onderzoek: warmer met meer CO2. Reformatorisch Dagblad.

Other output

van Helmond, N. A. G. M., Weijers, J. W. H., Verreussel, R. H. C. M., Donders, T. H., Munsterman, D. K., Bunnik, F. P. M., Reichart, G. J., & Sinninghe Damsté, J. S. (2010). Combined palynological and organic geochemical reconstruction of marine and terrestrial climate of the Early Pleistocene in northwest Europe. Poster session presented at Poster at NAC10: the 10th Netherlands Earth Sciences Conference.

Blaga, C. I., Reichart, G.-J., Lotter, A. F., Anselmetti, F., & Sinninghe Damsté, J. S. (2010). Late Glacial to Holocene abrupt temperature changes recorded by Crenarchaeota in Lake Lucerne (Vierwaldstättersee, Switzerland).. EGU2010-6531. Abstract from EGU 2010, Vienna.

Sangiorgi, F., Willmott, V., Kim, J.-H., Schouten, S., Brinkhuis, H., & Sinninghe Damsté, J. S. (2010). Neogene sea surface temperature reconstructions from the Southern McMurdo Sound and the McMurdo Ice-Shelf (ANDRILL Program, Antarctica).. Paper presented at IPY Oslo Science Conference, Oslo, Norway.

van Helmond, N. A. G. M., Weijers, J. W. H., Verreussel, R. H. C. M., Munsterman, D. K., Bunnik, F. P. M., Reichart, G.-J., & Sinninghe Damsté, J. S. (2010). Combined palynological and organic geochemical reconstruction of marine and terrestrial climate for the Early Pleistocene in northwest Europe.. Poster session presented at 17th NSG Annual Symposium, Utrecht.

Vellekoop, J., Brinkhuis, H., Sinninghe Damsté, J. S., Sluijs, A., Weijers, J. W. H., & Schouten, S. (2010). New insights in climatic and biotic effects of the bolide impact at the Cretaceous/Tertiary boundary.. Poster session presented at 17th NSG Annual Symposium, Utrecht.

Ruhl, M., Bonis, N. R., Reichart, G.-J., Sinninghe Damsté, J. S., & Kurschner, W. M. (2010). Atmospheric methane injection caused end-Triassic mass extinction.. EGU2010-7212. Abstract from EGU 2010, Vienna.

Sangiorgi, F., Willmott, V., Kim, J.-H., Schouten, S., Brinkhuis, H., Sinninghe Damsté, J. S., Florindo, F., Harwood, D., Naish, T., & Powell, R. (2010). Neogene sea surface temperature reconstructions from the Southern McMurdo Sound and the McMurdo Ice Shelf (ANDRILL Program, Antarctica).. Abstract from EGU 2010, Vienna.

Dekker, R., Speelman, E. N., Barke, J., Konijnendijk, T. Y. M., Sinninghe Damsté, J. S., & Reichart, G.-J. (2010). Climatic conditions governing extensive Azolla bloom during the Middle Eocene.. EGU2010-13389. Abstract from EGU 2010, Vienna.

Sluijs, A., Bijl, P. K., van Roij, L., Röhl, U., Sessa, J., Harrington, G., Reichart, G.-J., Lourens, L. J., Sinninghe Damsté, J. S., Anderson, L., Zachos, J. C., Brinkhuis, H., & Schouten, S. (2010). Temperature and salinity evolution of marginal marine surface waters during early Paleogene hyperthermals: new PETM sections and intercomparison of temperature proxies.. EGU2010-10272. Abstract from EGU General Assembly 2010, Wenen.

Bijl, P. K., Houben, A. J. P., Schouten, S., Sluijs, A., Reichart, G.-J., Zachos, J. C., Bohaty, S. M., Sinninghe Damsté, J. S., & Brinkhuis, H. (2010). Paleogene Temperature Evolution of the Southwest Pacific Ocean: Warming and Cooling the Greenhouse.. EGU2010-375. Abstract from EGU 2010, Vienna.

2009

Scholarly publications

Schouten, S., Klimiuk, A. M., van der Meer, M. T. J., & Sinninghe Damsté, J. S. (2009). Occurrence and Carbon Metabolism of Green Nonsulfur-like Bacteria in Californian and Nevada Hot Spring Microbial mats as Revealed by Wax Ester Lipid Analysis. Geomicrobiology Journal, 26(3), 179-188. Article PII 909233389. https://doi.org/10.1080/01490450902727884

Herfort, L., Kim, J.-H., Coolen, M. J. L., Abbas, B., Schouten, S., Herndl, G. J., & Damste, J. S. S. (2009). Diversity of Archaea and detection of crenarchaeotal amoA genes in the rivers Rhine and Tet. Aquatic Microbial Ecology, 55(2), 189-201. https://doi.org/10.3354/ame01294

Weijers, J. W. H., Schouten, S., Schefuss, E., Schneider, R. R., & Sinninghe Damsté, J. S. (2009). Disentangling marine, soil and plant organic carbon contributions to continental margin sediments: A multi-proxy approach in a 20,000 year sediment record from the Congo deep-sea fan. Geochimica et Cosmochimica Acta, 73(1), 119-132. https://doi.org/10.1016/j.gca.2008.10.016

Rampen, S. W., Volkman, J. K., Hur, S. B., Abbas, B. A., Schouten, S., Jameson, I. D., Holdsworth, D. G., Bae, J. H., & Sinninghe Damsté, J. S. (2009). Occurrence of gorgosterol in diatoms of the genus Delphineis. Organic Geochemistry, 40(1), 144-147. https://doi.org/10.1016/j.orggeochem.2008.09.002

Pitcher, A., Hopmans, E. C., Schouten, S., & Damste, J. S. S. (2009). Separation of core and intact polar archaeal tetraether lipids using silica columns: Insights into living and fossil biomass contributions. Organic Geochemistry, 40(1), 12-19. https://doi.org/10.1016/j.orggeochem.2008.09.008

Rampen, S. W., Schouten, S., Hopmans, E. C., Abbas, B., Noordeloos, A. A. M., van Bleijswijk, J. D. L., Geenevasen, J. A. J., & Damste, J. S. S. (2009). Diatoms as a source for 4-desmethyl-23,24-dimethyl steroids in sediments and petroleum. Geochimica et Cosmochimica Acta, 73(2), 377-387. https://doi.org/10.1016/j.gca.2008.10.024

Kulichevskaya, I. S., Baulina, O. I., Bodelier, P. L. E., Rijpstra, W. I. C., Sinninghe Damsté, J. S., & Dedysh, S. N. (2009). Zavarzinella formosa gen. nov., sp. nov., a novel stalked, Gemmata-like planctomycete from a Siberian peat bog. International Journal of Systematic and Evolutionary Microbiology, 59, 357-364. https://doi.org/10.1099/ijs.0.002378-0

Rampen, S. W., Schouten, S., Hopmans, E. C., Abbas, B., Noordeloos, A. A. M., Geenevasen, J. A. J., Moldowan, J. M., Denisevich, P., & Damste, J. S. S. (2009). Occurrence and biomarker potential of 23-methyl steroids in diatoms and sediments. Organic Geochemistry, 40(2), 219-228. https://doi.org/10.1016/j.orggeochem.2008.10.006

Bauersachs, T., Kremer, B., Schouten, S., & Damste, J. S. S. (2009). A biomarker and δ15N study of thermally altered Silurian cyanobacterial mats. Organic Geochemistry, 40(2), 149-157. https://doi.org/10.1016/j.orggeochem.2008.11.008

Rampen, S. W., Schouten, S., Panoto, F. E., Brink, M., Andersen, R. A., Muyzer, G., Abbas, B., & Sinninghe Damsté, J. S. (2009). Phylogenetic position of Attheya longicornis and Attheya septentrionalis (Bacillariophyta). Journal of Phycology, 45(2), 444-453. https://doi.org/10.1111/j.1529-8817.2009.00657.x

Rattray, J. E., Strous, M., den Camp, H. J. M. O., Schouten, S., Jetten, M. S. M., & Damste, J. S. S. (2009). A comparative genomics study of genetic products potentially encoding ladderane lipid biosynthesis. Biology Direct, 4, Article 8. https://doi.org/10.1186/1745-6150-4-8

Rattray, J. E., Geenevasen, J. A. J., van Niftrik, L., Rijpstra, W. I. C., Hopmans, E. C., Strous, M., Schouten, S., Jetten, M. S. M., & Sinninghe Damste, J. S. (2009). Carbon isotope-labelling experiments indicate that ladderane lipids of anammox bacteria are synthesized by a previously undescribed, novel pathway. FEMS Microbiology Letters, 292(1), 115-122. https://doi.org/10.1111/j.1574-6968.2008.01483.x

Kim, J.-H., Crosta, X., Michel, E., Schouten, S., Duprat, J., & Damste, J. S. S. (2009). Impact of lateral transport on organic proxies in the Southern Ocean. Quaternary Research, 71(2), 246-250. https://doi.org/10.1016/j.yqres.2008.10.005

Speelman, E. N., van Kempen, M. M. L., Barke, J., Brinkhuis, H., Reichart, G. J., Smolders, A. J. P., Roelofs, J. G. M., Sangiorgi, F., de Leeuw, J. W., Lotter, A. F., & Damste, J. S. S. (2009). The Eocene Arctic Azolla bloom: environmental conditions, productivity and carbon drawdown. Geobiology, 7(2), 155-170. https://doi.org/10.1111/j.1472-4669.2009.00195.x

Jaeschke, A., den Camp, H. J. M. O., Harhangi, H., Klimiuk, A., Hopmans, E. C., Jetten, M. S. M., Schouten, S., & Damste, J. S. S. (2009). 16S rRNA gene and lipid biomarker evidence for anaerobic ammonium-oxidizing bacteria (anammox) in California and Nevada hot springs. FEMS Microbiology Ecology, 67(3), 343-350. https://doi.org/10.1111/j.1574-6941.2008.00640.x

Kim, J. H., Buscail, R., Bourrin, F., Palanques, A., Sinninghe Damsté, J. S., Bonnin, J., & Schouten, S. (2009). Transport and depositional process of soil organic matter during wet and dry storms on the Tet inner shelf (NW Mediterranean). Palaeogeography, Palaeoclimatology, Palaeoecology, 273(3-4), 228-238. https://doi.org/10.1016/j.palaeo.2008.04.019

Schouten, S., Hopmans, E. C., van der Meer, J., Mets, A., Bard, E., Bianchi, T. S., Diefendorf, A., Escala, M., Freeman, K. H., Furukawa, Y., Huguet, C., Ingalls, A., Menot-Combes, G., Nederbragt, A. J., Oba, M., Pearson, A., Pearson, E. J., Rosell-Mele, A., Schaeffer, P., ... Damste, J. S. S. (2009). An interlaboratory study of TEX86 and BIT analysis using high-performance liquid chromatography-mass spectrometry. Geochemistry,Geophysics, Geosystems, 10, Article Q03012. https://doi.org/10.1029/2008GC002221

Blaga, C. I., Reichart, G.-J., Heiri, O., & Damste, J. S. S. (2009). Tetraether membrane lipid distributions in water-column particulate matter and sediments: a study of 47 European lakes along a north-south transect. Journal of Paleolimnology, 41(3), 523-540. https://doi.org/10.1007/s10933-008-9242-2

Jaeschke, A., Rooks, C., Trimmer, M., Nicholls, J. C., Hopmans, E. C., Schouten, S., & Damste, J. S. S. (2009). Comparison of ladderane phospholipid and core lipids as indicators for anaerobic ammonium oxidation (anammox) in marine sediments. Geochimica et Cosmochimica Acta, 73(7), 2077-2088. https://doi.org/10.1016/j.gca.2009.01.013

Bauersachs, T., Hopmans, E. C., Compaore, J., Stal, L. J., Schouten, S., & Sinninghe Damsté, J. S. (2009). Rapid analysis of long-chain glycolipids in heterocystous cyanobacteria using high-performance liquid chromatography coupled to electrospray ionization tandem mass spectrometry. Rapid Communications in Mass Spectrometry, 23(9), 1387-1394. https://doi.org/10.1002/rcm.4009

Bodelier, P. L. E., Gillisen, M.-J. B., Hordijk, K., Damste, J. S. S., Rijpstra, W. I. C., Geenevasen, J. A. J., & Dunfield, P. F. (2009). A reanalysis of phospholipid fatty acids as ecological biomarkers for methanotrophic bacteria. ISME Journal, 3(5), 606-617. https://doi.org/10.1038/ismej.2009.6

Kim, J.-H., Huguet, C., Zonneveld, K. A. F., Versteegh, G. J. M., Roeder, W., Damste, J. S. S., & Schouten, S. (2009). An experimental field study to test the stability of lipids used for the TEX86 and UK′37 palaeothermometers. Geochimica et Cosmochimica Acta, 73(10), 2888-2898. https://doi.org/10.1016/j.gca.2009.02.030

Trommer, G., Siccha, M., van der Meer, M. T. J., Schouten, S., Sinninghe Damsté, J. S., Schulz, H., Hemleben, C., & Kucera, M. (2009). Distribution of Crenarchaeota tetraether membrane lipids in surface sediments from the Red Sea. Organic Geochemistry, 40(6), 724-731. https://doi.org/10.1016/j.orggeochem.2009.03.001

Verschuren, D., Sinninghe Damsté, J. S., Moernaut, J., Kristen, I., Blaauw, M., Fagot, M., Haug, G. H., & CHALLACEA Project Members (2009). Half-precessional dynamics of monsoon rainfall near the East African equator: Implications for Indian Ocean ITCZ migration over the past 25,000 years. Geochimica et Cosmochimica Acta, 73(13), A1380-A1380. https://goldschmidtabstracts.info/abstracts/abstractView?id=2009002516

Weijers, J. W. H., Schouten, S., Schefuss, E., Schneider, R. R., & Sinninghe Damsté, J. S. (2009). Estimating soil organic carbon input to marine sediments. Geochimica et Cosmochimica Acta, 73(13), A1425-A1425. https://goldschmidtabstracts.info/abstracts/abstractView?id=2009000637

Gontharet, S., Stadnitskaia, A., Bouloubassi, I., Pierre, C., & Sinninghe Damsté, J. S. (2009). Palaeo methane-seepage history traced by biomarker patterns in a carbonate crust, Nile deep-sea fan (Eastern Mediterranean Sea). Marine Geology, 261(1-4), 105-113. https://doi.org/10.1016/j.margeo.2008.11.006

Bauersachs, T., Schouten, S., Compaore, J., Wollenzien, U., Stal, L. J., & Damste, J. S. S. (2009). Nitrogen isotopic fractionation associated with growth on dinitrogen gas and nitrate by cyanobacteria. Limnology and Oceanography, 54(4), 1403-1411. https://doi.org/10.4319/lo.2009.54.4.1403

Boumann, H. A., Longo, M. L., Stroeve, P., Poolman, B., Hopmans, E. C., Stuart, M. C. A., Damste, J. S. S., & Schouten, S. (2009). Biophysical properties of membrane lipids of anammox bacteria I. Ladderane phospholipids form highly organized fluid membranes. Biochimica et Biophysica Acta-Biomembranes, 1788(7), 1444-1451. https://doi.org/10.1016/j.bbamem.2009.04.008

Boumann, H. A., Stroeve, P., Longo, M. L., Poolman, B., Kuiper, J. M., Hopmans, E. C., Jetten, M. S. M., Damste, J. S. S., & Schouten, S. (2009). Biophysical properties of membrane lipids of anammox bacteria II. Impact of temperature and bacteriohopanoids. Biochimica et Biophysica Acta-Biomembranes, 1788(7), 1452-1457. https://doi.org/10.1016/j.bbamem.2009.04.005

Pitcher, A., Schouten, S., & Damste, J. S. S. (2009). In Situ Production of Crenarchaeol in Two California Hot Springs. Applied and Environmental Microbiology, 75(13), 4443-4451. https://doi.org/10.1128/AEM.02591-08

Seki, O., Sakamoto, T., Sakai, S., Schouten, S., Hopmans, E. C., Damste, J. S. S., & Pancost, R. D. (2009). Large changes in seasonal sea ice distribution and productivity in the Sea of Okhotsk during the deglaciations. https://doi.org/10.1029/2009GC002613

Balk, M., Heilig, H. G. H. J., van Eekert, M. H. A., Stams, A. J. M., Rijpstra, I. C., Sinninghe Damste, J. S., de Vos, W. M., & Kengen, S. W. M. (2009). Isolation and characterization of a new CO-utilizing strain, Thermoanaerobacter thermohydrosulfuricus subsp carboxydovorans, isolated from a geothermal spring in Turkey. Extremophiles, 13(6), 885-894. https://doi.org/10.1007/s00792-009-0276-9

Castaneda, I. S., Mulitza, S., Schefuss, E., dos Santos, R. A. L., Damste, J. S. S., & Schouten, S. (2009). Wet phases in the Sahara/Sahel region and human migration patterns in North Africa. Proceedings of the National Academy of Sciences of the United States of America, 106(48), 20159-20163. https://doi.org/10.1073/pnas.0905771106

Bauersachs, T., Compaore, J., Hopmans, E. C., Stal, L. J., Schouten, S., & Damste, J. S. S. (2009). Distribution of heterocyst glycolipids in cyanobacteria. Phytochemistry, 70(17-18), 2034-2039. https://doi.org/10.1016/j.phytochem.2009.08.014

Jagersma, G. C., Meulepas, R. J. W., Heikamp-de Jong, I., Gieteling, J., Klimiuk, A., Schouten, S., Damste, J. S. S., Lens, P. N. L., & Stams, A. J. M. (2009). Microbial diversity and community structure of a highly active anaerobic methane-oxidizing sulfate-reducing enrichment. Environmental Microbiology, 11(12), 3223-3232. https://doi.org/10.1111/j.1462-2920.2009.02036.x

Boere, A. C., Abbas, B., Rijpstra, W. I. C., Versteegh, G. J. M., Volkman, J. K., Sinninghe Damsté, J. S., & Coolen, M. J. L. (2009). Late-Holocene succession of dinoflagellates in an Antarctic fjord using a multi-proxy approach: Paleoenvironmental genomics, lipid biomarkers and palynomorphs. Geobiology, 7(3), 265-281. https://doi.org/10.1111/j.1472-4669.2009.00202.x

Peterse, F., Kim, J.-H., Schouten, S., Kristensen, D. K., Koç, N., & Sinninghe Damsté, J. S. (2009). Constraints on the application of the MBT/CBT palaeothermometer at high latitude environments (Svalbard, Norway). Organic Geochemistry, 40(6), 692-699. https://doi.org/10.1016/j.orggeochem.2009.03.004

Blaga, C. I., Reichart, G.-J., Heiri, O., & Sinninghe Damste, J. S. (2009). Tetraether membrane lipid distribution in water-column particulate matter and sediments: a study of 47 European lakes along a north-south transect. Journal of Paleolimnology, 41(3), 523-540. http://www.springerlink.com/content/d87w50417lu6t06p/

Jaeschke, A., Ziegler, M., Hopmans, E. C., Reichart, G.-J., Lourens, L. J., Schouten, S., & Sinninghe Damste, J. S. (2009). Molecular fossil evidence for anaerobic ammonium oxidation in the Arabian Sea over the last glacial cycle. Paleoceanography, 24, PA2202-doi: 10.1029/2008PA001712. http://www.agu.org/pubs/crossref/2009/2008PA001712.shtml

Verschuren, D., Sinninghe Damsté, J. S., Moernaut, J., Kristen, I., Blaauw, M., Fagot, M., & Haug, G. H. (2009). Half-precessional dynamics of monsoon rainfall near the East African Equator. Nature, 462(7273), 637-641. https://doi.org/10.1038/nature08520

Weijers, J. W. H., Panoto, E., van Bleijswijk, J., Schouten, S., Rijpstra, W. I. C., Balk, M., Stams, A. J. M., & Sinninghe Damsté, J. S. (2009). Constraints on the biological source(s) of the Orphan Branched Tetraether Membrane Lipids. Geomicrobiology Journal, 26(6), 402-414. https://doi.org/10.1080/01490450902937293

Huguet, C., Kim, J.-H., de lange, G. J., Damste, J. S. S., & Schouten, S. (2009). Effects of long term oxic degradation on the U37K′, TEX86 and BIT organic proxies. Organic Geochemistry, 40(12), 1188-1194. https://doi.org/10.1016/j.orggeochem.2009.09.003

Donders, T. H., Weijers, J. W. H., Munsterman, D. K., Kloosterboer-van Hoeve, M. L., Buckles, L. K., Pancrost, R. D., Schouten, S., Sinninghe Damsté, J. S., & Brinkhuis, H. (2009). Strong climate coupling of terrestrial and marine environments in the Miocene of northwest Europe. Earth and Planetary Science Letters, 281(3-4), 215-225.

Speelman, E. N., van Kempen, M. M. L., Barke, J., Brinkhuis, H., Reichart, G.-J., Smolders, A. J. P., Roelofs, J. G. M., Sangiorgi, F., de Leeuw, J. W., Lotter, A. F., & Sinninghe Damste, J. S. (2009). The Eocene Arctic Azolla bloom: environmental conditions, productivity and carbon drawdown. Geobiology, 7(2), 155-170, doi: 10.1111/j.1472-4669.2009.00195.x. http://www.ingentaconnect.com/content/bsc/gbi/2009/00000007/00000002/art00005

Rampen, S. W., Schouten, S., Panoto, F. E., Brink, M., Andersen, R. A., Muyzer, G., Abbas, B., & Sinninghe Damsté, J. S. (2009). Phylogenetic position of Attheya longicornis and Attheya septentrionalis. Journal of Phycology, 45(2), 444-453.

Peterse, F., van der Meer, M. T. J., Schouten, S., Jia, G., Ossebaar, J., Blokker, J., & Sinninghe Damsté, J. S. (2009). Assessment of soil n-alkane δD and branched tetraether membrane lipid distributions as tools for paleoelevation reconstruction. Biogeosciences, 6(12), 2799-2807. https://doi.org/10.5194/bg-6-2799-2009

Damste, J. S. S., Ossebaar, J., Abbas, B., Schouten, S., & Verschuren, D. (2009). Fluxes and distribution of tetraether lipids in an equatorial African lake: Constraints on the application of the TEX86 palaeothermometer and BIT index in lacustrine settings. Geochimica et Cosmochimica Acta, 73(14), 4232-4249. https://doi.org/10.1016/j.gca.2009.04.022

Sluijs, A., Schouten, S., Donders, T. H., Schoon, P. L., Röhl, U., Reichart, G.-J., Sangiorgi, F., Kim, J.-H., Sinninghe Damste, J. S., & Brinkhuis, H. (2009). Warm and wet conditions in the Arctic region during Eocene Thermal Maximum 2. Nature Geoscience, 2, 777-780, doi:10.1038/ngeo668. https://doi.org/10.1038/ngeo668
https://dspace.library.uu.nl/bitstream/handle/1874/39397/ngeo668.pdf?sequence=2

Speelman, E. N., Reichart, G.-J., de Leeuw, J. W., Rijpstra, W. I. C., & Damste, J. S. S. (2009). Biomarker lipids of the freshwater fern Azolla and its fossil counterpart from the Eocene Arctic Ocean. Organic Geochemistry, 40(5), 628-637. https://doi.org/10.1016/j.orggeochem.2009.02.001

van Bentum, E. C., Hetzel, A., Brumsack, H.-J., Forster, A., Reichart, G.-J., & Sinninghe Damsté, J. S. (2009). Reconstruction of water column anoxia in the equatorial Atlantic during the Cenomanian-Turonian oceanic anoxic event using biomarker and trace metal proxies. Palaeogeography, Palaeoclimatology, Palaeoecology, 280(3-4), 489-498. https://doi.org/10.1016/j.palaeo.2009.07.003

Rampen, S. W., Schouten, S., Schefuss, E., & Damste, J. S. S. (2009). Impact of temperature on long chain diol and mid-chain hydroxy methyl alkanoate composition in Proboscia diatoms: Results from culture and field studies. Organic Geochemistry, 40(11), 1124-1131. https://doi.org/10.1016/j.orggeochem.2009.08.005

Peterse, F., Schouten, S., van der Meer, J., van der Meer, M. T. J., & Sinninghe Damsté, J. S. (2009). Distribution of branched tetraether lipids in geothermally heated soils: Implications for the MBT/CBT temperature proxy. Organic Geochemistry, 40(2), 201-205. https://doi.org/10.1016/j.orggeochem.2008.10.010

Other output

van Soelen, E. E., Brooks, G., Lammertsma, E., Donders, T., Wagner-Cremer, F., Sangiorgi, F., Cremer, H., Sinninghe Damsté, J. S., & Reichart, G. J. (2009). Evaluation of organic geochemical and micropaleontological proxies for Holocene paleoclimate reconstructions in Tampa Bay, Florida. Geophysical Research Abstracts, 11, Article EGU2009-2718. http://adsabs.harvard.edu/abs/2009EGUGA..11.2718V
https://dspace.library.uu.nl/bitstream/handle/1874/308536/18.pdf?sequence=1

Marino, G., Rohling, E. J., Sangiorgi, F., Sinninghe Damsté, J. S., & Brinkhuis, H. (2009). The eastern Mediterranean response to climate forcing: comparison between the two most recent interglacial maxima.. EGU2009-8511. Abstract from EGU General Assembly 2009, Vienna, Austria.

Blaga, C. I., Reichart, G.-J., Schouten, S., Lotter, A. F., & Sinninghe Damsté, J. S. (2009). Methylation and cyclisation of branched glycerol dialkyl glycerol tetraethers as temperature and pH proxies.. EGU2009-6284. Abstract from EGU General Assembly 2009, Vienna, Austria.

van Soelen, E. E., Brooks, G., Lammertsma, E. I., Donders, T. H., Wagner-Cremer, F., Sangiorgi, F., Cremer, H., Sinninghe Damsté, J. S., & Reichart, G.-J. (2009). Evaluation of organic geochemical and micropaleontological proxies for Holocene paleoclimate reconstructions in Tampa Bay, Florida.. EGU2009-2718. Abstract from EGU General Assembly 2009, Vienna, Austria.

2008

Scholarly publications

Kartal, B., van Niftrik, L., Rattray, J., de Vossenberg, J. L. C. M. V., Schmid, M. C., Damste, J. S. S., Jetten, M. S. M., & Strous, M. (2008). Candidatus 'Brocadia fulgida': an autofluorescent anaerobic ammonium oxidizing bacterium. FEMS Microbiology Ecology, 63(1), 46-55. https://doi.org/10.1111/j.1574-6941.2007.00408.x

Schouten, S., Baas, M., Hopmans, E. C., Reysenbach, A.-L., & Damste, J. S. S. (2008). Tetraether membrane lipids of Candidatus "Aciduliprofundum boonei", a cultivated obligate thermoacidophilic euryarchaeote from deep-sea hydrothermal vents. Extremophiles, 12(1), 119-124. https://doi.org/10.1007/s00792-007-0111-0

Balk, M., Altinbas, M., Rijpstra, W. I. C., Sinninghe Damsté, J. S., & Stams, A. J. M. (2008). Desulfatirhabdium butyrativorans gen. nov., sp nov., a butyrate-oxidizing, sulfate-reducing bacterium isolated from an anaerobic bioreactor. International Journal of Systematic and Evolutionary Microbiology, 58, 110-115. https://doi.org/10.1099/ijs.0.65396-0

Schouten, S., Ozdirekcan, S., van der Meer, M. T. J., Blokker, P., Baas, M., Hayes, J. M., & Sinninghe Damsté, J. S. (2008). Evidence for substantial intramolecular heterogeneity in the stable carbon isotopic composition of phytol in photoautotrophic organisms. Organic Geochemistry, 39(1), 135-146. https://doi.org/10.1016/j.orggeochem.2007.09.002

Schouten, S., Eldrett, J., Greenwood, D. R., Harding, I., Baas, M., & Damste, J. S. S. (2008). Onset of long-term cooling of Greenland near the Eocene-Oligocene boundary as revealed by branched tetraether lipids. Geology, 36(2), 147-150. https://doi.org/10.1130/G24332A.1

Bornemann, A., Norris, R. D., Friedrich, O., Beckmann, B., Schouten, S., Damste, J. S. S., Vogel, J., Hofmann, P., & Wagner, T. (2008). Isotopic evidence for glaciation during the Cretaceous supergreenhouse. Science, 319(5860), 189-192. https://doi.org/10.1126/science.1148777

Kim, J.-H., Schouten, S., Hopmans, E. C., Donner, B., & Sinninghe Damsté, J. S. (2008). Global sediment core-top calibration of the TEX86 paleothermometer in the ocean. Geochimica et Cosmochimica Acta, 72(4), 1154-1173. https://doi.org/10.1016/j.gca.2007.12.010

Wagner, T., Herrle, J. O., Damste, J. S. S., Schouten, S., Stuesser, I., & Hofmann, P. (2008). Rapid warming and salinity changes of Cretaceous surface waters in the subtropical North Atlantic. Geology, 36(3), 203-206. https://doi.org/10.1130/G24523A.1

Schouten, S., Hopmans, E. C., Baas, M., Boumann, H., Standfest, S., Koenneke, M., Stahl, D. A., & Damste, J. S. S. (2008). Intact membrane lipids of "Candidatus Nitrosopumilus maritimus," a cultivated representative of the cosmopolitan mesophilic group I crenarchaeota. Applied and Environmental Microbiology, 74(8), 2433-2440. https://doi.org/10.1128/AEM.01709-07

Stadnitskaia, A., Nadezhkin, D., Abbas, B., Blinova, V., Ivanov, M. K., & Damste, J. S. S. (2008). Carbonate formation by anaerobic oxidation of methane: Evidence from lipid biomarker and fossil 16S rDNA. Geochimica et Cosmochimica Acta, 72(7), 1824-1836. https://doi.org/10.1016/j.gca.2008.01.020

Kulichevskaya, I. S., Ivanova, A. O., Baulina, O. I., Bodelier, P. L. E., Sinninghe Damsté, J. S., & Dedysh, S. N. (2008). Singulisphaera acidiphila gen. nov., sp nov., a non-filamentous, Isosphaera-like planctomycete from acidic northern wetlands. International Journal of Systematic and Evolutionary Microbiology, 58, 1186-1193. https://doi.org/10.1099/ijs.0.65593-0

Sinninghe Damsté, J. S., & Hopmans, E. C. (2008). Does fossil pigment and DNA data from Mediterranean sediments invalidate the use of green sulfur bacterial pigments and their diagenetic derivatives as proxies for the assessment of past photic zone euxinia? Environmental Microbiology, 10(6), 1392-1399. https://doi.org/10.1111/j.1462-2920.2008.01609.x

Hofmann, P., Stuesser, I., Wagner, T., Schouten, S., & Damste, J. S. S. (2008). Climate-ocean coupling off North-West Africa during the Lower Albian: The Oceanic Anoxic Event 1b. Palaeogeography, Palaeoclimatology, Palaeoecology, 262(3-4), 157-165. https://doi.org/10.1016/j.palaeo.2008.02.014

Handley, L., Hollis, C., Crouch, E., Schouten, S., Huber, M., Morgans, H., Pearson, P., Sinninghe Damsté, J. S., Burgess, C., & Pancost, R. D. (2008). Integrated biomarker records reveal complex and dramatic changes in high latitude climate during the Paleogene. Geochimica et Cosmochimica Acta, 72(12), A349-A349.

Kim, J.-H., Buscail, R., Bzarzycka, B., Kerherve, P., Peterse, F., Schouten, S., Ludwig, W., & Damste, J. S. S. (2008). Tracking soil organic matter export across the continent-ocean interface: A case study of the NW Mediterranean using the BIT index. Geochimica et Cosmochimica Acta, 72(12), A472-A472.

Coolen, M. J. L., Talbot, H. M., Abbas, B. A., Ward, C., Schouten, S., Volkman, J. K., & Sinninghe Damsté, J. S. (2008). Sources for sedimentary bacteriohopanepolyols as revealed by 16S rDNA stratigraphy. Environmental Microbiology, 10(7), 1783-1803. https://doi.org/10.1111/j.1462-2920.2008.01601.x

Rattray, J. E., van de Vossenberg, J., Hopmans, E. C., Kartal, B., van Niftrik, L., Rijpstra, W. I. C., Strous, M., Jetten, M. S. M., Schouten, S., & Damste, J. S. S. (2008). Ladderane lipid distribution in four genera of anammox bacteria. Archives of Microbiology, 190(1), 51-66. https://doi.org/10.1007/s00203-008-0364-8

Werne, J. P., Lyons, T. W., Hollander, D. J., Schouten, S., Hopmans, E. C., & Damste, J. S. S. (2008). Investigating pathways of diagenetic organic matter sulfurization using compound-specific sulfur isotope analysis. Geochimica et Cosmochimica Acta, 72(14), 3489-3502. https://doi.org/10.1016/j.gca.2008.04.033

van der Meer, M. T. J., Lammerts, L., Skirnisdottir, S., Sinninghe Damsté, J. S., & Schouten, S. (2008). Distribution and isotopic composition of bacterial lipid biomarkers in microbial mats from a sulfidic Icelandic hot spring. Organic Geochemistry, 39(8), 1015-1019. https://doi.org/10.1016/j.orggeochem.2008.04.002

Talbot, H. M., Coolen, M. J. L., & Sinninghe Damsté, J. S. (2008). An unusual 17α,21β(H)-bacteriohopanetetrol in Holocene sediments from Ace Lake (Antarctica). Organic Geochemistry, 39(8), 1029-1032. https://doi.org/10.1016/j.orggeochem.2008.01.008

Mollenhauer, G., Eglinton, T. I., Hopmans, E. C., & Sinninghe Damsté, J. S. (2008). A radiocarbon-based assessment of the preservation characteristics of crenarchaeol and alkenones from continental margin sediments. Organic Geochemistry, 39(8), 1039-1045. https://doi.org/10.1016/j.orggeochem.2008.02.006

Schouten, S., Baas, M., Hopinans, E. C., & Damste, J. S. S. (2008). An unusual isoprenoid tetraether lipid in marine and lacustrine sediments. Organic Geochemistry, 39(8), 1033-1038. https://doi.org/10.1016/j.orggeochem.2008.01.019

Stadnitskaia, A., Bouloubassi, I., Elvert, M., Hinrichs, K.-U., & Sinninghe Damsté, J. S. (2008). Extended hydroxyarchaeol, a novel lipid biomarker for anaerobic methanotrophy in cold seepage habitats. Organic Geochemistry, 39(8), 1007-1014. https://doi.org/10.1016/j.orggeochem.2008.04.019

Beckmann, B., Hofmann, P., Maerz, C., Schouten, S., Sinninghe Damsté, J. S., & Wagner, T. (2008). Coniacian-Santonian deep ocean anoxia/euxinia inferred from molecular and inorganic markers: Results from the Demerara Rise (ODP Leg 207). Organic Geochemistry, 39(8), 1092-1096. https://doi.org/10.1016/j.orggeochem.2008.03.019

Stadnitskaia, A., Ivanov, M. K., & Sinninghe Damsté, J. S. (2008). Application of lipid biomarkers to detect sources of organic matter in mud volcano deposits and post-eruptional methanotrophic processes in the Gulf of Cadiz, NE Atlantic. Marine Geology, 255(1-2), 1-14. https://doi.org/10.1016/j.margeo.2007.11.006

Forster, A., Kuypers, M. M. M., Turgeon, S. C., Brumsack, H.-J., Petrizzo, M. R., & Damste, J. S. S. (2008). The Cenomanian/Turonian oceanic anoxic event in the South Atlantic: New insights from a geochemical study of DSDP Site 530A. Palaeogeography, Palaeoclimatology, Palaeoecology, 267(3-4), 256-283. https://doi.org/10.1016/j.palaeo.2008.07.006

Tierney, J. E., Russell, J. M., Huang, Y., Damste, J. S. S., Hopmans, E. C., & Cohen, A. S. (2008). Northern hemisphere controls on tropical southeast African climate during the past 60,000 years. Science, 322(5899), 252-255. https://doi.org/10.1126/science.1160485

Schouten, S., van der Meer, M. T. J., Hopmans, E. C., & Damste, J. S. S. (2008). Comment on "Lipids of marine Archaea: Patterns and provenance in the water column and sediments" by Turich et al. (2007). Geochimica et Cosmochimica Acta, 72(21), 5342-5346. https://doi.org/10.1016/j.gca.2008.03.028

Rampen, S. W., Schouten, S., Koning, E., Brummer, G.-J. A., & Sinninghe Damsté, J. S. (2008). A 90 kyr upwelling record from the northwestern Indian Ocean using a novel long-chain diol index. Earth and Planetary Science Letters, 276(1-2), 207-213. https://doi.org/10.1016/j.epsl.2008.09.022

Jaeschke, A., Lewan, M. D., Hopmans, E. C., Schouten, S., & Sinninghe Damsté, J. S. (2008). Thermal stability of ladderane lipids as determined by hydrous pyrolysis. Organic Geochemistry, 39(12), 1735-1741. https://doi.org/10.1016/j.orggeochem.2008.08.006

Sinninghe Damsté, J. S., Ossebaar, J., Schouten, S., & Verschuren, D. (2008). Altitudinal shifts in the branched tetraether lipid distribution in soil from Mt. Kilimanjaro (Tanzania): Implications for the MBT/CBT continental palaeothermometer. Organic Geochemistry, 39, 1072-1076.

van der Meer, M. T. J., Sangiorgi, F., Baas, M., Brinkhuis, H., Sinninghe Damsté, J. S., & Schouten, S. (2008). Molecular isotopic and dinoflagellate evidence for Late Holocene freshening of the Black Sea. Earth and Planetary Science Letters, 267, 426-434.

Sluijs, A., Röhl, U., Schouten, S., Brumsack, H.-J., Sangiorgi, F., Sinninghe Damsté, J. S., & Brinkhuis, H. (2008). Arctic late Paleocene-early Eocene paleoenvironments with special emphasis on the Paleocene-Eocene thermal maximum (Lomonosov Ridge, Integrated Ocean Drilling Program Expedition 302). Paleoceanography, 23(1), Article PA1S11. https://doi.org/10.1029/2007PA001495
https://dspace.library.uu.nl/bitstream/handle/1874/385789/Arctic_late_Paleocene.pdf?sequence=1

Sangiorgi, F., Brumsack, H.-J., Willard, D. A., Schouten, S., Stickley, C. E., O'Regan, M., Reichart, G.-J., Sinninghe Damsté, J. S., & Brinkhuis, H. (2008). A 26 million year gap in the central Arctic record at the greenhouse-icehouse transition: Looking for clues. Paleoceanography, 23, PA1S04, doi:10.1029/2007PA001477.

Damste, J. S. S., Kuypers, M. M. M., Pancost, R. D., & Schouten, S. (2008). The carbon isotopic response of algae, (cyano)bacteria, archaea and higher plants to the late Cenomanian perturbation of the global carbon cycle: Insights from biomarkers in black shales from the Cape Verde Basin (DSDP Site 367). Organic Geochemistry, 39(12), 1703-1718. https://doi.org/10.1016/j.orggeochem.2008.01.012

Sangiorgi, F., van Soelen, E. E., Spofforth, D. J. A., Pälike, H., Stickley, C. E., St. John, K., Koc, N., Schouten, S., Sinninghe Damsté, J. S., & Brinkhuis, H. (2008). Cyclicity in the middle Eocene central Arctic Ocean sediment record: orbital forcing and environmental response. Paleoceanography, 23, PA1S08, doi:10.1029/2007PA001487.

Sluijs, A., Brinkhuis, H., Crouch, E. M., John, C. M., Handley, L., Munsterman, D., Bohaty, S. M., Zachos, J. C., Reichart, G.-J., Schouten, S., Pancost, R. D., Damste, J. S. S., Welters, N. L. D., Lotter, A. F., & Dickens, G. R. (2008). Eustatic variations during the Paleocene-Eocene greenhouse world. Paleoceanography, 23(4), Article PA4216. https://doi.org/10.1029/2008PA001615, https://doi.org/10.1029/2008PA001615
https://dspace.library.uu.nl/bitstream/handle/1874/385782/Sluijs_et_al_2008_Paleoceanography.pdf?sequence=1

Weijers, J. W. H., Schouten, S., Sluijs, A., Brinkhuis, H., & Sinninghe Damsté, J. S. (2008). Erratum to "Warm arctic continents during the Palaeocene-Eocene thermal maximum" [Earth Planet. Sci. Lett. 261 (2007) 230-238] (DOI:10.1016/j.epsl.2007.06.033). Earth and Planetary Science Letters, 268(1-2), 243. https://doi.org/10.1016/j.epsl.2008.01.013
https://dspace.library.uu.nl/bitstream/handle/1874/385774/Erratum_to.pdf?sequence=1

Huguet, C., de Lange, G. J., Gustafsson, O., Middelburg, J. J., Sinninghe Damsté, J. S., & Schouten, S. (2008). Selective preservation of soil organic matter in oxidized marine sediments (Madeira Abyssal Plain). Geochimica et Cosmochimica Acta, 72, 6061-6068.

van de Vossenberg, J., Rattray, J. E., Geerts, W. J. C., Kartal, B., van Niftrik, L., van Donselaar, E. G., Sinninghe Damste, J. S., Strous, M., & Jetten, M. S. M. (2008). Enrichment and characterization of marine anammox bacteria associated with global nitrogen gas production. Environmental Microbiology, 10(9), 3120-3129.

Other output

Speelman, E. N., Reichart, G.-J., de Leeuw, J. W., Noone, D., Sinninghe Damsté, J. S., Brinkhuis, H., & Kempen, M. (2008). Reconstructing Eocene Arctic surface water conditions using proxy and model data.. Paper presented at 9th Nederlands Aardwetenschappelijk Congres (NAC 9), Veldhoven.

Sluijs, A., Schouten, S., Röhl, U., Reichart, G.-J., Sinninghe Damsté, J. S., Sangiorgi, F., Krishnan, S., Pagani, M., & Brinkhuis, H. (2008). Fresh and warm Arctic Ocean Surface Waters during Eocene Thermal Maximum 2.. Abstract from EGU 2008, Vienna, Austria.

Bauersachs, T., Compaore, J., Stal, L., Schouten, S., Speelman, E. N., Hopmans, E. C., de Leeuw, J. W., & Sinninghe Damsté, J. S. (2008). Lipids and stable nitrogen isotopes as tools to trace for the presence of dinitrogen-fixing cyanobacteria in recent and ancient environments.. Poster session presented at 12th International Symposium on Microbial Ecology – ISME-12 Microbial Diversity – Sustaining the Blue Planet, Cairns, Australia.

Barke, J., Brinkhuis, H., Sangiorgi, F., van der Burgh, J., van Konijnenburg-van Cittert, J. H. A., Collinson, M. E., Speelman, E. N., Reichart, G.-J., Kempen, M., Roelofs, J., Sinninghe Damsté, J. S., & Lotter, A. F. (2008). Extensive Azolla bloom in the Eocene Arctic Ocean: Indications for major episodes of fresh surface waters and possible consequences for global biogeochemical cycling.. Abstract from EGU 2008, Vienna, Austria.

Blaga, C. I., Reichart, G.-J., Heiri, O., & Sinninghe Damsté, J. S. (2008). Tetraether membrane lipid distributions in lake particulate matter and sediments: A study of 47 European lakes along a North-South transect.. Abstract from EGU 2008, Vienna, Austria.

Blaga, C. I., Reichart, G.-J., Heiri, O., & Sinninghe Damsté, J. S. (2008). Tetraether membrane lipid distributions in lake particulate matter and sediments.. Paper presented at 9th Nederlands Aardwetenschappelijk Congres, Veldhoven.

Jaeschke, A., Ziegler, M., Reichart, G.-J., Hopmans, E. C., Schouten, S., & Sinninghe Damsté, J. S. (2008). Application of ladderane lipids as a proxy for past anammox activity. A420-A420. Abstract from 18th Annual Goldschmidt Conference.

Zachos, J. C., McCarren, H., Bohaty, S. M., John, C. M., Sluijs, A., Brinkhuis, H., Sloan, L. C., Sinninghe Damsté, J. S., & Schouten, S. (2008). The magnitude of ocean warming during the PETM: Implications for forcing and climate sensitivity. Geochimica et Cosmochimica Acta, 71(15), A1150-A1150 Suppl. S.

Weijers, J. W. H., Donders, T. H., Munsterman, D. K., Kloosterboer-van Hoeve, M. L., Buckles, L. K., Pancost, R. D., Schouten, S., Sinninghe Damsté, J. S., & Brinkhuis, H. (2008). Coupled land-sea Miocene climate changes from the Southern North Sea Basin, NW Europe; a palynological and organic geochemical approach.. Abstract from EGU 2008, Vienna, Austria.

2007

Scholarly publications

Kulichevskaya, I. S., Ivanova, A. O., Belova, S. E., Baulina, O. I., Bodelier, P. L. E., Rijpstra, W. I. C., Sinninghe Damsté, J. S., Zavarzin, G. A., & Dedysh, S. N. (2007). Schlesneria paludicola gen. nov., sp nov., the first acidophilic member of the order Planctomycetales, from Sphagnum-dominated boreal wetlands. International Journal of Systematic and Evolutionary Microbiology, 57, 2680-2687. https://doi.org/10.1099/ijs.0.65157-0

Herfort, L., Schouten, S., Abbas, B., Veldhuis, M. J. W., Coolen, M. J. L., Wuchter, C., Boon, J. P., Herndl, G. J., & Damste, J. S. S. (2007). Variations in spatial and temporal distribution of Archaea in the North Sea in relation to environmental variables. FEMS Microbiology Ecology, 62(3), 242-257. https://doi.org/10.1111/j.1574-6941.2007.00397.x

Damste, J. S. S., Rijpstra, W. I. C., Hopmans, E. C., Schouten, S., Balk, M., & Stams, A. J. M. (2007). Structural characterization of diabolic acid-based tetraester, tetraether and mixed ether/ester, membrane-spanning lipids of bacteria from the order Thermotogales. Archives of Microbiology, 188(6), 629-641. https://doi.org/10.1007/s00203-007-0284-z

Schouten, S., Huguet, C., Hopmans, E. C., Kienhuis, M. V. M., & Sinninghe Damsté, J. S. (2007). Analytical methodology for TEX86 paleothermometry by high-performance liquid chromatography/atmospheric pressure chemical ionization-mass spectrometry. Analytical Chemistry, 79(7), 2940-2944. https://doi.org/10.1021/ac062339v

Weijers, J. W. H., Schouten, S., Sluijs, A., Brinkhuis, H., & Sinninghe Damsté, J. S. (2007). Warm Arctic continents during the Palaeocene - Eocene thermal maximum. Earth and Planetary Science Letters, 261(1-2), 230-238. https://doi.org/10.1016/j.epsl.2007.06.033
https://dspace.library.uu.nl/bitstream/handle/1874/385802/Warm_arctic_continents.pdf?sequence=1

Huguet, C., Schimmelmann, A., Thunell, R., Lourens, L. J., Sinninghe Damsté, J. S., & Schouten, S. (2007). A study of the TEX86 paleothermometer in the water column and sediments of the Santa Barbara Basin, California. Paleoceanography, 22(3), PA3203-doi:10.1029/2006PA001310.

van der Meer, M. T. J., Baas, M., Rijpstra, W. I. C., Marino, G., Rohling, E. J., Sinninghe Damsté, J. S., & Schouten, S. (2007). Hydrogen isotopic compositions of long-chain alkenones record freshwater flooding of the Eastern Mediterranean at the onset of sapropel deposition. Earth and Planetary Science Letters, 262(3-4), 594-600.

Dupré, S., Woodside, J., Foucher, J.-P., de Lange, G. J., Mascle, J., Boetius, A., Mastalerz, V., Stadnitskaia, A. N., Ondreas, H., Huguen, C., Harmégnies, F., Gontharet, S., Loncke, L., Deville, E., Niemann, H., Omoregie, E., Roy, K. O. L., Fiala-Médioni, A., Dählmann, A., ... Party, N. S. (2007). Seafloor geological studies above active gas chimneys off Egypt (Central Nile Deep Sea Fan). Deep-Sea Research. Part I: oceanographic research papers, 54(7), 1146-1172.

Marino, G., Rohling, E. J., Rijpstra, W. I. C., Sangiorgi, F., Schouten, S., & Sinninghe Damsté, J. S. (2007). Aegean Sea as driver of hydrographic and ecological changes in the eastern Mediterranean. Geology, 35(8), 675-678.

Schouten, S., Woltering, M., Rijpstra, W. I. C., Sluijs, A., Brinkhuis, H., & Sinninghe Damsté, J. S. (2007). The Paleocene-Eocene carbon isotope excursion in higher plant organic matter: Differential fractionation of angiosperms and conifers in the Arctic. Earth and Planetary Science Letters, 258, 581-592. https://doi.org/10.1016/j.epsl.2007.04.024
https://dspace.library.uu.nl/bitstream/handle/1874/385783/Paleocene_Eocene_carbon_isotope_excursion.pdf?sequence=1

Sluijs, A., Brinkhuis, H., Schouten, S., Bohaty, S. M., John, C. M., Zachos, J. C., Reichart, G.-J., Sinninghe Damsté, J. S., Crouch, E. M., & Dickens, G. R. (2007). Environmental precursors to rapid light carbon injection at the Palaeocene/Eocene boundary. Nature, 450, 1218-1221.
https://dspace.library.uu.nl/bitstream/handle/1874/31621/Nature%2520450%2520%282007%29%25207173.pdf?sequence=1

Weijers, J. W. H., Schefuß, E., Schouten, S., & Sinninghe Damsté, J. S. (2007). Coupled thermal and hydrological evolution of tropical Africa over the last deglaciation. Science, 315(5819), 1701-1704. https://doi.org/10.1126/science.1138131

Professional publications

Sangiorgi, F., Brumsack, H.-J., Willard, D. A., Schouten, S., Stickley, C. E., O'Regan, M., Reichart, G.-J., Sinninghe Damsté, J. S., & Brinkhuis, H. (2007). A 26 million year gap in the central Arctic Ocean Cenozoic record: why and how? In Annual report 2006 Netherlands Research School of Sedimentary Geology (NSG) (pp. 41-46). Netherlands Research School of Sedimentary Geology (NSG). http://www.falw.vu/~nsg/
https://dspace.library.uu.nl/bitstream/handle/1874/321572/6.pdf?sequence=1

Sinninghe Damsté, J. S. (2007). Acceptance of the 2005 Alfred E. Treibs Award. Geochimica et Cosmochimica Acta, 71(15 Supplement 1), S12-S13.

Other output

Sangiorgi, F., Brumsack, H.-J., Schouten, S., Brinkhuis, H., Willard, D. A., Reichart, G.-J., Stickley, C. E., Kaminski, M. A., & Sinninghe Damsté, J. S. (2007). A 25 Ma gap in the central Arctic Cenezoic record; Why and how?. Abstract from EGU 2007.

Marino, G., Rohling, E. J., Rijpstra, W. I. C., Sangiorgi, F., Brinkhuis, H., Schouten, S., & Sinninghe Damsté, J. S. (2007). Major ecological changes in the eastern Mediterranean during the last interglacial sapropel S5.. Abstract from EGU 2007.

Zachos, J. C., McCarren, H., Bohaty, S., John, C., Sluijs, A., Brinkhuis, H., Sloan, L. C., Sinninghe Damsté, J. S., & Schouten, S. (2007). The magnitude of ocean warming during the PETM: Implications for forcing and climate sensitivity.. A1150-A1150. Abstract from 17th Annual V. M. Goldschmidt Conference, Cologne, Germany.

2006

Scholarly publications

Hopmans, E. C., Kienhuis, M. V. M., Rattray, J. E., Jaeschke, A., Schouten, S., & Sinninghe Damstté, J. S. (2006). Improved analysis of ladderane lipids in biomass and sediments using high-performance liquid chromatography/atmospheric pressure chemical ionization tandem mass spectrometry. Rapid Communications in Mass Spectrometry, 20(14), 2099-2103. https://doi.org/10.1002/rcm.2572

Brinkhuis, H., Schouten, S., Collinson, M. E., Sluijs, A., Sinninghe Damsté, J. S., Dickens, G. R., Huber, M., Cronin, T. M., Onodera, J., Takahashi, K., Bujak, J. P., Stein, R., van der Burgh, J., Eldrett, J. S., Harding, I. C., Lotter, A. F., Sangiorgi, F., van Konijnenburg-van Cittert, J. H. A., de Leeuw, J. W., ... Moran, K. (2006). Episodic fresh surface waters in the Eocene Arctic Ocean. Nature, 441(7093), 606-609. http://www.nature.com/nature/journal/v441/n7093/abs/nature04692.html
https://dspace.library.uu.nl/bitstream/handle/1874/22387/sinninghe_06_episodic_fresh.pdf?sequence=2

Rohling, E. J., Hopmans, E. C., & Sinninghe Damste, J. S. (2006). Water column dynamics during the last interglacial anoxic event in the Mediterranean (sapropel S5). Paleoceanography, 21(2), PA2018-doi: 10.1029/2005PA001237.

Menzel, D., Hopmans, E. C., & Sinninghe Damsté, J. S. (2006). Membrane tetraether lipids of planktonic Crenarchaeota in Pliocene sapropels of the eastern Mediterranean Sea. Palaeogeography, Palaeoclimatology, Palaeoecology, 239, 1-15.

Pagani, M., Pedentchouk, N., Huber, M., Sluijs, A., Schouten, S., Brinkhuis, H., Sinninghe Damsté, J. S., Reichart, G.-J., & Dickens, G. R. (2006). Arctic hydrology during global warming at the Palaeocene/Eocene thermal maximum (vol 442, pg 671, 2006). Nature, 443, 598-598. https://doi.org/10.1038/nature05043
https://dspace.library.uu.nl/bitstream/handle/1874/385780/Arctic_hydrology.pdf?sequence=1

Sluijs, A., Schouten, S., Pagani, M., Woltering, M., Brinkhuis, H., Sinninghe Damsté, J. S., Dickens, G. R., Huber, M., Reichart, G.-J., Stein, R., Matthiessen, J., Lourens, L. J., Pedentchouk, N., Backman, J., & Moran, K. (2006). Subtropical Arctic Ocean temperatures during the Palaeocene/Eocene thermal maximum. Nature, 441(7093), 610-613.
https://dspace.library.uu.nl/bitstream/handle/1874/22389/sinninghe_06_subtropical_arctic.pdf?sequence=2

Blokker, P., van den Ende, H., de Leeuw, J. W., Versteegh, G. J. M., & Sinninghe Damsté, J. S. (2006). Chemical fingerprinting of algaenans using RuO4 degradation. Organic Geochemistry, 37, 871-881.

Pagani, M., Pedentchouk, N., Huber, M., Sluijs, A., Schouten, S., Brinkhuis, H., Sinninghe Damsté, J. S., Reichart, G.-J., & Dickens, G. R. (2006). Arctic hydrology during global warming at the Palaeocene/Eocene thermal maximum. Nature, 442, 671-675.
https://dspace.library.uu.nl/bitstream/handle/1874/22388/sinninghe_06_arctic_hydrology.pdf?sequence=2

Professional publications

Pagani, M., Pedentchouk, N., Huber, M., Sluijs, A., Schouten, S., Brinkhuis, H., Damsté, J. S. S., Dickens, G. R., Backman, J., Clemens, S., Cronin, T., Eynaud, F., Gattacceca, J., Jakobsson, M., Jordan, R., Kaminski, M., King, J., Koc, N., Martinez, N. C., ... Yamamoto, M. (2006). Erratum: Arctic hydrology during global warming at the Palaeocene/Eocene thermal maximum (Nature (2006) 442 (671-675)). Nature, 443(7111), 598. https://doi.org/10.1038/nature05211

Other output

Sinninghe Damsté, J. S. (2006). Moleculen uit een ver verleden. Faculteit Geowetenschappen - Universiteit Utrecht.

Marino, G., Rohling, E. J., Rijpstra, W. I. C., Sangiorgi, F., Brinkhuis, H., Schouten, S., & Sinninghe Damsté, J. S. (2006). The role of ceased deep water ventilation in massive organic carbon sedimentation.. Abstract from AGU Fall Meeting 2006, San Francisco, USA, California, United States.

Lotter, A. F., Verbruggen, F., Blaga, C. I., Visschers, L. W., Heiri, O., Reichart, G.-J., Muyzer, G., Laanbroek, H. J., & Sinninghe Damsté, J. S. (2006). Validation of palaeotemperature proxies in European lakes.. Poster session presented at 10th International Paleolimnology Symposium, Duluth, Minnesota, USA.

Sluijs, A., Brinkhuis, H., Schouten, S., Zachos, J. C., Bohaty, S. M., John, C. M., Deltrap, R., Reichart, G.-J., Sinninghe Damsté, J. S., & Crouch, E. M. (2006). Global warming leads the carbon isotope excursion at the Paleocene-Eocene thermal maximum.. Abstract from AGU Fall Meeting 2006, San Francisco, USA, California, United States.

Blaga, C. I., Verbruggen, F., Vissers, E., Lotter, A. F., Heiri, O., Reichart, G.-J., Muyzer, G., Laansbroek, H. J., & Sinninghe Damsté, J. S. (2006). Validation of palaeotemperature proxies in European lakes.. Poster session presented at 13th Annual NSG Symposium, Utrecht.

Pagani, M., Pedentchouck, N., Huber, M., Sluijs, A., Schouten, S., Brinkhuis, H., Sinninghe Damsté, J. S., & Dickens, G. R. (2006). The nature of the negative carbon isotope excursion during the PETM: a View from the Arctic.. 96. Abstract from Climate and Biota of the Early Paleogene 2006, Bilbao, Spain.

Sluijs, A., Schouten, S., Brinkhuis, H., Sinninghe Damsté, J. S., Dickens, G. R., Huber, M., Reichart, G.-J., Pagani, M., & Lourens, L. J. (2006). A subtropical North Pole during the late Paleocene - early Eocene. Abstract from 3rd EGU General Assembly.

Sangiorgi, F., Brumsack, H.-J., Schouten, S., Brinkhuis, H., Kaminski, M. A., Reichart, G.-J., Stickley, C. E., Willard, D. A., & Sinninghe Damsté, J. S. (2006). The gap in the Arctic Cenozoic record: Expect the unexpected.. Abstract from AGU Fall Meeting 2006, San Francisco, USA, California, United States.

2005

Scholarly publications

Menzel, D., van Bergen, P. F., Veld, H., & Sinninghe Damsté, J. S. (2005). The molecular composition of kerogen in Pliocene Meditererranean sapropels and associated homogeneous, calcareous ooze. Organic Geochemistry, 36, 1037-1053.

Kolonic, S., Wagner, T., Forster, A., Sinninghe Damsté, J. S., Walsworth-Bell, B., Erba, E., Turgeon, S., Chellai, E. H., Brumsack, H.-J., Tsikos, H., Kuhnt, W., & Kuypers, M. M. M. (2005). Black shale deposition on the northwest African Shelf during the Cenomanian/Turonian oceanic anoxic event: Climate coupling and global organic carbon burial. Paleoceanography, 20, PA1006. https://doi.org/10.1029/2003PA000950

van der Meer, M. T. J., Schouten, S., Bateson, M. M., Nübel, U., Wieland, A., Kühl, M., de Leeuw, J. W., Sinninghe Damsté, J. S., & Ward, D. M. (2005). Diel variations in carbon metabolism by green nonsulfur-like bacteria in alkaline siliceous hot spring microbial mats from Yellowstone National Park. Applied and Environmental Microbiology, 71(7), 3978-3986.

Powers, L. A., Johnson, T. C., Werne, J. P., Castañeda, I. S., Hopmans, E., Sinninghe Damsté, J. S., & Schouten, S. (2005). Large temperature variability in the southern African tropics since the Last Glacial Maximum. Geophysical Research Letters, 32, L08706.

Other output

Sluijs, A., Schouten, S., Pagani, M., Brinkhuis, H., Sinninghe Damsté, J. S., Dickens, G. R., Huber, M., Reichart, G.-J., Stein, R., & Lourens, L. J. (2005). Ultra-high late Paleocene - early Eocene sea surface temperatures on the North Pole.. Paper presented at AGU Meeting, San Francisco, USA.

2004

Scholarly publications

Versteegh, G. J. M., Blokker, P., Wood, G. D., Collinson, M. E., Sinninghe Damsté, J. S., & de Leeuw, J. W. (2004). An example of oxidative polymerization of unsaturated fatty acids as a preservation pathway for dinoflagellate organic matter. Organic Geochemistry, 35(10), 1129-1139.

Werne, J., Haese, R. R., Zitter, T., Aloisi, G., Bouloubassi, I., Heijs, S., Fiala-Medioni, A., Pancost, R. D., Sinninghe Damsté, J. S., de Lange, G. J., Forney, L. J., Gottschal, J. C., Foucher, J.-P., Mascle, J., & Woodside, J. (2004). Life in cold seeps: A synthesis of ecological and biogeochemical data from Kazan mud volcano, eastern Mediterranean Sea. Chemical Geology, 205, 367-390.

Kuypers, M. M. M., Lourens, L. J., Rijpstra, W. I. C., Pancost, R. D., Nijenhuis, I. A., & Sinninghe Damsté, J. S. (2004). Orbital forcing of organic carbon burial in the proto-North Atlantic during Oceanic Anoxic Event 2. Earth and Planetary Science Letters, 228, 465-482.

Powers, L. A., Werne, J. P., Johnson, T. C., Hopmans, E. C., Sinninghe Damsté, J. S., & Schouten, S. (2004). Crenarchaeotal membrane lipids in lake sediments: A new paleotemperature proxy for continental paleoclimate reconstruction? Geology, 32(7), 613-616.

Wagner, T., Sinninghe Damsté, J. S., Hofmann, P., & Beckmann, B. (2004). Euxinia and primary production in Late Cretaceous eastern equatorial Atlantic surface waters fostered orbitally driven formation of marine black shales. Paleoceanography, 19(3), PA3009.

van Bergen, P. F., Blokker, P., Collinson, M. E., Sinninghe Damsté, J. S., & de Leeuw, J. W. (2004). Structural biomacromolecules in plants: What can be learnt from the fossil record? In A. R. Hemsley, & I. Poole (Eds.), The Evolution of Plant Physiology (pp. 133-154). (Linnaen Society Symposium Series; No. 21). Elsevier.

Menzel, D., Schouten, S., van Bergen, P. F., & Sinninghe Damsté, J. S. (2004). Higher plant vegetation changes during Pliocene sapropel formation. Organic Geochemistry, 35(11-12), 1343-1353.

2003

Scholarly publications

Sinninghe Damsté, J. S., Kuypers, M. M. M., Schouten, S., Schulte, S., & Rullkötter, J. (2003). The lycopane/C31 n-alkane ratio as a proxy to assess palaeoxicity during sediment deposition. Earth and Planetary Science Letters, 209, 215-226.

Menzel, D., van Bergen, P. F., Schouten, S., & Sinninghe Damsté, J. S. (2003). Reconstruction of changes in export productivity during Pliocene sapropel deposition: A biomarker approach. Palaeogeography, Palaeoclimatology, Palaeoecology, 190, 273-287.

Schefuß, E., Ratmeyer, V., Stuut, J.-BW., Jansen, J. H. F., & Sinninghe Damsté, J. S. (2003). Compound-specific carbon isotope analysis of n-alkanes in dust from the lower atmosphere over the eastern Atlantic. Geochimica et Cosmochimica Acta, 67, 1757-1767.

2002

Scholarly publications

Sinninghe Damsté, J. S., Rijpstra, W. I. C., & Reichart, G.-J. (2002). The influence of oxic degradation on the sedimentary biomarker record II. Evidence from Arabian Sea sediments. Geochimica et Cosmochimica Acta, 66(15), 2737-2754.

Kuypers, M. M. M., Pancost, R. D., Nijenhuis, I. A., & Sinninghe Damsté, J. S. (2002). Enhanced productivity led to increased organic carbon burial in the euxinic North Atlantic basin during the late Cenomanian oceanic anoxic event. Paleoceanography, 17(4), 1-13.

Hoefs, M. J. L., Rijpstra, W. I. C., de Leeuw, J. W., & Sinninghe Damsté, J. S. (2002). The influence of oxic degradation on the sedimentary biomarker record I: Evidence from Madeira Abyssal Plain turbidites. Geochimica et Cosmochimica Acta, 66(15), 2719-2735.

Menzel, D., Hopmans, E. C., van Bergen, P. F., de Leeuw, J. W., & Sinninghe Damsté, J. S. (2002). Development of photic zone euxinia in te eastern Mediterranean Basin during deposition of Pliocene sapropels. Marine Geology, 189(3-4), 215-226.

2001

Scholarly publications

Ferreira, A. M., Caetano, M., Baas, M., Vale, C., & Sinninghe Damsté, J. S. (2001). Formation of mid-chain alkane keto-ols by post-depositional oxidation of mid-chain diols in Mediterranean sapropels. Organic Geochemistry, 32, 271-276.

Schefuß, E., Versteegh, G. J. M., Jamsen, J. H. F., & Sinninghe Damsté, J. S. (2001). Marine and terrigenous lipids in Southeast Atlantic sediments as palaeoenvironmental indicators: Initial results. Proceedings of the Ocean Drilling Program. Scientific results, 175, 1-34.

Blokker, P., van Bergen, P. F., Pancost, R., Collinson, M. E., de Leeuw, J. W., & Sinninghe Damsté, J. S. (2001). The chemical structure of Gloeocasomorpha prisca microfossils: Implications for their origin. Geochimica et Cosmochimica Acta, 65, 885-900.

Popularising publications

Sinninghe Damsté, J. S. (2001). Chemische fossielen als klimaatverklikkers. Natuur & techniek, 69, 56-61.

2000

Scholarly publications

Baas, M., Pancost, R., van Geel, B., & Sinninghe Damsté, J. S. (2000). A comparative study of lipids in Sphagnum species. Organic Geochemistry, 31, 535-539.

Pancost, R. D., van Geel, B., Baas, M., & Sinninghe Damsté, J. S. (2000). d13C values and radiocarbon dates of microbial biomarkers as tracers for carbon recycling in peat deposits. Geology, 28, 663-666.

Schouten, S., Hoefs, M. J. L., & Sinninghe Damsté, J. S. (2000). A molecular and stable carbon isotopic study of lipids in Late Quaternary sediments from the Arabian Sea. Organic Geochemistry, 31, 509-521.

Professional publications

Sinninghe Damsté, J. S. (2000). Chemie in dienst van geologie. Chemisch2Weekblad, 15, 16-17.

1999

Scholarly publications

Passier, H. F., Bosch, H.-J., Nijenhuis, I. A., Lourens, L. J., Böttcher, M. E., Leenders, A., Sinninghe Damste, J., De Lange, G. J., & de Leeuw, J. W. (1999). Sulphidic mediterranean surface waters during Pliocene sapropel formation. Nature, 397(6715), 146-149. https://doi.org/10.1038/16441

See publications on the UU Research Portal

Dr. ir. Jaap Sinninghe Damste

Dr. ir. Jaap Sinninghe Damste

Publications

2024

Scholarly publications

2023

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2022

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2021

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2020

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2019

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Professional publications

2018

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2017

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2016

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2015

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2014

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2013

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2012

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2011

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2010

Scholarly publications

Popularising publications

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2009

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Other output

2008

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2007

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Professional publications

Other output

2006

Scholarly publications

Professional publications

Other output

2005

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Other output

2004

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2003

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2002

Scholarly publications

2001

Scholarly publications

Popularising publications

2000

Scholarly publications

Professional publications

1999

Scholarly publications

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