Publications
2023
Scholarly publications
IJsseldijk, L. L., Begeman, L., Duim, B., Gröne, A., Kik, M. J. L., Klijnstra, M. D., Lakemeyer, J., Leopold, M. F., Munnink, B. B. O., Ten Doeschate, M., van Schalkwijk, L., Zomer, A., der Graaf-van Bloois, L. V., & Broens, E. M. (2023). Harbor Porpoise Deaths Associated with Erysipelothrix rhusiopathiae, the Netherlands, 2021. Emerging Infectious Diseases, 29(4), 835-838. https://doi.org/10.3201/eid2904.221698
van der Graaf-van Bloois, L., Duim, B., Looft, T., Veldman, K. T., Zomer, A. L., & Wagenaar, J. A. (2023). Antimicrobial resistance in Campylobacter fetus: emergence and genomic evolution. Microbial genomics, 9(3). https://doi.org/10.1099/mgen.0.000934
Naing, S. Y., Duim, B., Broens, E. M., Schweitzer, V., Zomer, A., van der Graaf-van Bloois, L., van der Meer, C., Stellingwerff, L., Fluit, A. C., & Wagenaar, J. A. (2023). Molecular Characterization and Clinical Relevance of Taxonomic Reassignment of Staphylococcus schleiferi Subspecies into Two Separate Species, Staphylococcus schleiferi and Staphylococcus coagulans. Microbiology spectrum, [e0467022]. https://doi.org/10.1128/spectrum.04670-22
Sips, G. J., van Dijk, M. A. M., van Westreenen, M., van der Graaf-van Bloois, L., Duim, B., & Broens, E. M. (2023). Evidence of cat-to-human transmission of Staphylococcus felis. Journal of Medical Microbiology, 72(2), [001661]. https://doi.org/10.1099/jmm.0.001661
Exel, C. E., Gerritsen, K., Spaninks, M., Duim, B., Koop, G., & Benedictus, L. (2023). Association of Staphylococcus aureus genotypes with milk or colonization of extramammary sites in Dutch dairy cattle indicates strain variation in reservoirs for intramammary infections. Research in Veterinary Science, 154, 138-144. https://doi.org/10.1016/j.rvsc.2022.12.010
2022
Scholarly publications
Kannekens-Jager, M. M., de Rooij, M. M. T., de Groot, Y., Biesbroeck, E., de Jong, M. K., Pijnacker, T., Smit, L. A. M., Schuurman, N., Broekhuizen-Stins, M. J., Zhao, S., Duim, B., Langelaar, M. F. M., Stegeman, A., Kooistra, H. S., Radstake, C., Egberink, H. F., Wagenaar, J. A., & Broens, E. M. (2022). SARS-CoV-2 infection in dogs and cats is associated with contact to COVID-19 positive household members. Transboundary and emerging diseases, [tbed14713]. https://doi.org/10.1111/tbed.14713
Wegener, A., Duim, B., van der Graaf-van Bloois, L., Zomer, A. L., Visser, C. E., Spaninks, M., Timmerman, A. J., Wagenaar, J. A., & Broens, E. M. (2022). Within-Household Transmission and Bacterial Diversity of Staphylococcus pseudintermedius. Pathogens, 11(8), 1-6. [850]. https://doi.org/10.3390/pathogens11080850
Meijer, E. FJ., Renssen, A. V., Maat, I., Bloois, L. V. D. G., Duim, B., & Broens, E. (2022). Canine Staphylococcus argenteus: Case Report from The Netherlands. pathogens, 11(2), 1-7. [153]. https://doi.org/10.3390/pathogens11020153
Naing, S. Y., Hordijk, J., Duim, B., Broens, E., van der Graaf - van Bloois, L., Rossen, J. W. A., Robben, J., Leendertse, M., Wagenaar, J., & Zomer, A. (2022). Genomic Investigation of Two Acinetobacter baumannii Outbreaks in a Veterinary Intensive Care Unit in The Netherlands. Pathogens, 11(2), 1-14. [123]. https://doi.org/10.3390/pathogens11020123
Professional publications
van Dijk, M., Broens, E., Duim, B., Kannekens - Jager, M., Nijsse, R., & Wagenaar, J. (2022). Project Monitoring Zoönosen en Antimicrobiële Resistentie bij Gezelschapsdieren: Jaarrapportage 2021. Utrecht University.
2021
Scholarly publications
Schürch, A. C., Mughini Gras, L., Duim, B., & Willems, R. J. L. (2021). Het microbioom in de zoönotische transmissie van antibioticumresistentie. Nederlands Tijdschrift voor Medische Microbiologie, 29(3), 112-117.
Wegener, A., Broens, E. M., van der Graaf-van Bloois, L., Zomer, A. L., Visser, C. E., van Zeijl, J., van der Meer, C., Kusters, J. G., Friedrich, A. W., Kampinga, G. A., Sips, G. J., Smeets, L., van Kerckhoven, M. E. J., Timmerman, A. J., Wagenaar, J. A., & Duim, B. (2021). Absence of Host-Specific Genes in Canine and Human Staphylococcus pseudintermedius as Inferred from Comparative Genomics. Antibiotics, 10(7), 1-10. [854]. https://doi.org/10.3390/antibiotics10070854
Patel, S., Vlasblom, A. A., Verstappen, K. M., Zomer, A. L., Fluit, A. C., Rogers, M. R. C., Wagenaar, J. A., Claesson, M. J., & Duim, B. (2021). Differential Analysis of Longitudinal Methicillin-Resistant Staphylococcus aureus Colonization in Relation to Microbial Shifts in the Nasal Microbiome of Neonatal Piglets. mSystems, 6(4), 1-15. [e00152-21]. https://doi.org/10.1128/mSystems.00152-21
Duim, B., van der Graaf-van Bloois, L., Timmerman, A., Wagenaar, J. A., Flipse, J., Wallinga, J., Bloembergen, P., Miller, W. G., & Zomer, A. L. (2021). Complete Genome Sequence of a Clinical Campylobacter Isolate Identical to a Novel Campylobacter Species. Microbiology Resource Announcements, 10(7), 1-3. [e00721]. https://doi.org/10.1128/MRA.00721-20
Mughini-Gras, L., Pijnacker, R., Coipan, C., Mulder, A. C., Veludo, A. F., de Rijk, S., van Hoek, A. H. A. M., Buij, R., Muskens, G., Koene, M., Veldman, K., Duim, B., Graaf-van Bloois, L. V. D., van der Weijden, C., Kuiling, S., Verbruggen, A., van der Giessen, J., Opsteegh, M., van der Voort, M., ... Franz, E. (2021). Sources and transmission routes of campylobacteriosis: a combined analysis of genome and exposure data. Journal of Infection, 82(2), 216-226. https://doi.org/10.1016/j.jinf.2020.09.039
2020
Scholarly publications
Dekker, N., Duim, B., Luiten, D., Hinsenveld, N., Luijkx, S., Everts, R., Groenevelt, M., & Dhungyel, O. (2020). Diversity of serogroups of Dichelobacter nodosus in ovine footrot lesions on Dutch sheep farms. 44. Poster session presented at 2nd International Conference of the European College of Veterinary Microbiology (ICECVM).
Flipse, J., Duim, B., Wallinga, J. A., de Wijkerslooth, L. R. H., Graaf-van Bloois, L. V. D., Timmerman, A. J., Zomer, A. L., Veldman, K. T., Wagenaar, J. A., & Bloembergen, P. (2020). A Case of Persistent Diarrhea in a Man with the Molecular Detection of Various Campylobacter species and the First Isolation of candidatus Campylobacter infans. Pathogens, 9(12), [1003]. https://doi.org/10.3390/pathogens9121003
Mulder, A. C., Franz, E., de Rijk, S., Versluis, M. A. J., Coipan, C., Buij, R., Müskens, G., Koene, M., Pijnacker, R., Duim, B., Bloois, L. V. D. G. V., Veldman, K., Wagenaar, J. A., Zomer, A. L., Schets, F. M., Blaak, H., & Mughini-Gras, L. (2020). Tracing the animal sources of surface water contamination with Campylobacter jejuni and Campylobacter coli. Water Research, 187, [116421]. https://doi.org/10.1016/j.watres.2020.116421
Gilbert, M. J., IJsseldijk, L. L., Rubio-García, A., Gröne, A., Duim, B., Rossen, J., Zomer, A. L., & Wagenaar, J. A. (2020). After the bite: bacterial transmission from grey seals ( Halichoerus grypus ) to harbour porpoises ( Phocoena phocoena ). Royal Society Open Science, 7(5), [192079]. https://doi.org/10.1098/rsos.192079
Hordijk, J., Farmakioti, E., Smit, L. A., Duim, B., Graveland, H., Theelen, M. J. P., & Wagenaar, J. A. (2020). Fecal carriage of Extended Spectrum ß-Lactamase (ESBL)/AmpC-producing Escherichia coli in horses. Applied and Environmental Microbiology, 86(8), 1-9. [e02590-19]. https://doi.org/10.1128/AEM.02590-19
Wegener, A., Damborg, P., Guardabassi, L., Moodley, A., Mughini-Gras, L., Duim, B., Wagenaar, J. A., & Broens, E. M. (2020). Specific staphylococcal cassette chromosome mec (SCCmec) types and clonal complexes are associated with low-level amoxicillin/clavulanic acid and cefalotin resistance in methicillin-resistant Staphylococcus pseudintermedius. Journal of Antimicrobial Chemotherapy, 75(3), 508-511. https://doi.org/10.1093/jac/dkz509
2019
Scholarly publications
Kalupahana, R. S., Duim, B., Verstappen, K. M., Gamage, C. D., Dissanayake, N., Ranatunga, L., Graveland, H., & Wagenaar, J. A. (2019). MRSA in pigs and the environment as a risk for employees in pig-dense areas of Sri Lanka. Frontiers in Sustainable Food Systems, 3, [25]. https://doi.org/10.3389/fsufs.2019.00025
Gilbert, M. J., Duim, B., Zomer, A. L., & Wagenaar, J. A. (2019). Living in Cold Blood: Arcobacter, Campylobacter, and Helicobacter in Reptiles. Frontiers in Microbiology, 10, [1086]. https://doi.org/10.3389/fmicb.2019.01086
Sleutjens, J., Meijer, D., Meregalli, P. G., Bakker, L., Wagenaar, J. A., Duim, B., & Zomer, A. (2019). Zoonotic Endocarditis in a Man, the Netherlands. Emerging Infectious Diseases, 25(1), 180-182. https://doi.org/10.3201/eid2501.181029
Wegener, A. C. H., Damborg, P., Duim, B., Guardabassi, L., Wagenaar, J. A., & Broens, E. M. (2019). Low-level β-lactam resistance in Dutch and Danish methicillin-resistant Staphylococcus pseudintermedius is associated with clonal complexes. Poster session presented at ECCMID 2019.
Wegener, A. C. H., Broens, E. M., Zomer, A. L., van Bloois, L., Timmerman, A. J., Wagenaar, J. A., & Duim, B. (2019). Comparison and dynamics of resistance gene content in canine and human Staphylococcus pseudintermedius. Poster session presented at KNVM Spring meeting.
2018
Scholarly publications
Bos, M. E. H., Gilbert, M. J., Duim, B., Urlings, B. A-P., Heres, L., Wagenaar, J. A., & Heederik, D. J. J. (2018). Quantitative exposure to livestock-associated MRSA ST398 of pig slaughterhouse workers. https://doi.org/10.31274/safepork-180809-589
Duim, B., Wegener, A. C. H., Zomer, A. L., Spaninks, M. P., Wagenaar, J. A., & Broens, E. M. (2018). Phenotypic antimicrobial resistances in methicillin-resistant Staphylococcus pseudintermedius detected with whole genome sequencing. Poster session presented at ECCMID 2018.
Wegener, A. C. H., Broens, E. M., Zomer, A. L., Timmerman, A. J., Wagenaar, J. A., & Duim, B. (2018). Genomic comparisons of antimicrobial resistance in canine and human S. pseudintermedius. Poster session presented at Challenges and new concepts in Antibiotics Research conference.
Wegener, A., Broens, E. M., Zomer, A., Spaninks, M., Wagenaar, J. A., & Duim, B. (2018). Comparative genomics of phenotypic antimicrobial resistances in methicillin-resistant Staphylococcus pseudintermedius of canine origin. Veterinary Microbiology, 225, 125-131. https://doi.org/10.1016/j.vetmic.2018.09.013
Hoekstra, J., Rutten, V., Sommeling, L., van Werven, T., Spaninks, M., Duim, B., Benedictus, L., & Koop, G. (2018). High Production of LukMF' in Staphylococcus aureus Field Strains Is Associated with Clinical Bovine Mastitis. Toxins, 10(5), [200]. https://doi.org/10.3390/toxins10050200
Gilbert, M. J., Duim, B., van der Graaf-van Bloois, L., Wagenaar, J. A., & Zomer, A. L. (2018). Homologous Recombination between Genetically Divergent Campylobacter fetus Lineages Supports Host-Associated Speciation. Genome Biology and Evolution, 10(3), 716-722. https://doi.org/10.1093/gbe/evy048
Gilbert, M. J., Zomer, A. L., Timmerman, A. J., Spaninks, M. P., Rubio García, A., Rossen, J. W. A., Duim, B., & Wagenaar, J. A. (2018). Campylobacter blaseri sp. nov., isolated from common seals (Phoca vitulina). International Journal of Systematic and Evolutionary Microbiology, 68, 1787-1794. https://doi.org/10.1099/ijsem.0.002742
Duim, B., Verstappen, K. M. H. W., Kalupahana, R. S., Ranathunga, L., Fluit, A. C., & Wagenaar, J. A. (2018). Methicillin-resistant Staphylococcus pseudintermedius among dogs in the description of novel SCCmec variants. Veterinary Microbiology, 213, 136-141. https://doi.org/10.1016/j.vetmic.2017.11.022
2017
Scholarly publications
Wegener, A. C. H., Broens, E. M., Zomer, A. L., Spaninks, M. P., Wagenaar, J. A., & Duim, B. (2017). Comparative genomics of phenotypic antimicrobial resistances in methicillin-resistant Staphylococcus pseudintermedius. Poster session presented at veterinary science day 2017, Bunnik.
Wegener, A. C. H., Broens, E. M., Zomer, A. L., Spaninks, M. P., Wagenaar, J. A., & Duim, B. (2017). Comparative genomics of phenotypic antimicrobial resistances in methicillin-resistant Staphylococcus pseudintermedius. Poster session presented at KNVM Spring meeting.
Verstappen, K. M., Willems, E., Fluit, A. C., Duim, B., Martens, M., & Wagenaar, J. A. (2017). Staphylococcus aureus Nasal Colonization Differs among Pig Lineages and Is Associated with the Presence of Other Staphylococcal Species. Frontiers in Veterinary Science, 4, [97]. https://doi.org/10.3389/fvets.2017.00097
Verstappen, K. M., Huijbregts, L., Spaninks, M., Wagenaar, J. A., Fluit, A. C., & Duim, B. (2017). Development of a real-time PCR for detection of Staphylococcus pseudintermedius using a novel automated comparison of whole-genome sequences. PLoS One, 12(8), [e0183925]. https://doi.org/10.1371/journal.pone.0183925
Verstappen, K. M., Huijbregts, L., Spaninks, M., Wagenaar, J. A., Fluit, A. C., & Duim, B. (2017). Correction: Development of a real-time PCR for detection of Staphylococcus pseudintermedius using a novel automated comparison of whole-genome sequences. PLoS One, 12(12), [e0189520]. https://doi.org/10.1371/journal.pone.0189520
Baede, V. O., Broens, E. M., Spaninks, M. P., Timmerman, A. J., Graveland, H., Wagenaar, J. A., Duim, B., & Hordijk, J. (2017). Raw pet food as a risk factor for shedding of extended-spectrum beta-lactamase-producing Enterobacteriaceae in household cats. PLoS One, 12(11), [0187239]. https://doi.org/10.1371/journal.pone.0187239
Gilbert, M. J., Duim, B., Timmerman, A. J., Zomer, A. L., & Wagenaar, J. A. (2017). Whole genome-based phylogeny of reptile-associated Helicobacter indicates independent niche adaptation followed by diversification in a poikilothermic host. Scientific Reports, 7, [8387]. https://doi.org/10.1038/s41598-017-09091-7
Koppenaal, H., Groenendijk, F., van den Berge, M., Verkade, E., Verduin, K., Zomer, A. L., Duim, B., Wagenaar, J. A., Tijsma, A. S. L., Spierenburg, M. A. H., & Te Wierik, M. J. M. (2017). Een uitbraak met Campylobacter fetus na het eten van rauwmelkse schapenkaas: Hoe traceer je de bron van een uitbraak? Nederlands Tijdschrift voor Geneeskunde, 161, [D1704].
Gilbert, M. J., Miller, W. G., Leger, J. S., Chapman, M. H., Timmerman, A. J., Duim, B., Foster, G., & Wagenaar, J. A. (2017). Campylobacter pinnipediorum sp. nov., isolated from pinnipeds, comprising Campylobacter pinnipediorum subsp. pinnipediorum subsp. nov. and Campylobacter pinnipediorum subsp. caledonicus subsp. nov. International Journal of Systematic and Evolutionary Microbiology, 67, 1961-1968. https://doi.org/10.1099/ijsem.0.001894
de Graaf, M., Beck, R., Caccio, S. M., Duim, B., Fraaij, P. LA., Le Guyader, F. S., Lecuit, M., Le Pendu, J., de Wit, E., & Schultsz, C. (2017). Sustained fecal-oral human-to-human transmission following a zoonotic event. Current Opinion in Virology, 22, 1-6. https://doi.org/10.1016/j.coviro.2016.11.001
https://dspace.library.uu.nl/bitstream/handle/1874/346032/fecal.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/346032/fecal.pdf?sequence=1
2016
Scholarly publications
Broens, E. M., de Laat, J., Zomer, A. L., Wagenaar, J. A., & Duim, B. (2016). Staphylococcus schleiferi: a single species or two separate subspecies?. Poster session presented at ECCMID.
Duim, B., Zomer, A. L., de Laat, J., Wagenaar, J. A., & Broens, E. M. (2016). Classification of Staphylococcus schleiferi Subspecies Using Whole Genome Comparisons. Poster session presented at ASM-Microbe.
Hordijk, J., Broens, E. M., Scheele, V., Linden van der, J., Wagenaar, J. A., & Duim, B. (2016). Characterization of Multi Resistant Pseudomonas aeruginosa from Clinical Isolates from Animals. Poster session presented at ASM-Microbe.
Duim, B., Verstappen, K. M., Broens, E. M., Laarhoven, L. M., Van Duijkeren, E., Hordijk, J., De Heus, P., Spaninks, M., Timmerman, A. J., & Wagenaar, J. A. (2016). Changes in the population of methicillin-resistant Staphylococcus pseudintermedius and dissemination of antimicrobial-resistant phenotypes in the Netherlands. Journal of Clinical Microbiology, 54(2), 283-288. https://doi.org/10.1128/JCM.01288-15
Gilbert, M. J., Miller, W. G., Yee, E., Kik, M., Zomer, A. L., Wagenaar, J. A., & Duim, B. (2016). Comparative genomics of Campylobacter iguaniorum to unravel genetic regions associated with reptilian hosts. Genome Biology and Evolution, 8(9), 3022-3029. https://doi.org/10.1093/gbe/evw218
van der Graaf-van Bloois, L., Duim, B., Miller, W. G., Forbes, K. J., Wagenaar, J. A., & Zomer, A. (2016). Whole genome sequence analysis indicates recent diversification of mammal-associated Campylobacter fetus and implicates a genetic factor associated with H2S production. BMC Genomics, 17, [713]. https://doi.org/10.1186/s12864-016-3058-7
Verstappen, K. M., Tulinski, P., Duim, B., Fluit, A. C., Carney, J., van Nes, A., & Wagenaar, J. A. (2016). The Effectiveness of Bacteriophages against Methicillin-Resistant Staphylococcus aureus ST398 Nasal Colonization in Pigs. PLoS One, 11(8), [e0160242]. https://doi.org/10.1371/journal.pone.0160242
Dekker, N., Daemen, I., Verstappen, K., de Greeff, A., Smith, H., & Duim, B. (2016). Simultaneous Quantification and Differentiation of Streptococcus suis Serotypes 2 and 9 by Quantitative Real-Time PCR, Evaluated in Tonsillar and Nasal Samples of Pigs: Gelijktijdige kwantificering en differentiatie van Streptococcus suis serotypes 2 en 9 met kwantitatieve Real-Time PCR, onderzocht in tonsil en neus monsters van varkens. Pathogens and Disease, 5(3), [46]. https://doi.org/10.3390/pathogens5030046
Gilbert, M. J., Miller, W. G., Yee, E., Zomer, A. L., van der Graaf-van Bloois, L., Fitzgerald, C., Forbes, K. J., Méric, G., Sheppard, S. K., Wagenaar, J. A., & Duim, B. (2016). Comparative Genomics of Campylobacter fetus from Reptiles and Mammals Reveals Divergent Evolution in Host-Associated Lineages. Genome Biology and Evolution, 8(6), 2006-2019. https://doi.org/10.1093/gbe/evw146
Mughini-Gras, L., Penny, C., Ragimbeau, C., Schets, F. M., Blaak, H., Duim, B., Wagenaar, J. A., de Boer, A., Cauchie, H-M., Mossong, J., & van Pelt, W. (2016). Quantifying potential sources of surface water contamination with Campylobacter jejuni and Campylobacter coli. Water Research, 101, 36-45. https://doi.org/10.1016/j.watres.2016.05.069
Graaf-van Bloois, L. V. D., Miller, W. G., Yee, E., Gorkiewicz, G., Forbes, K. J., Zomer, A. L., Wagenaar, J. A., & Duim, B. (2016). Campylobacter fetus Subspecies Contain Conserved Type IV Secretion Systems on Multiple Genomic Islands and Plasmids. PLoS One, 11(4), [e0152832]. https://doi.org/10.1371/journal.pone.0152832
Bos, M. E. H., Verstappen, K. M., van Cleef, B. A. G. L., Dohmen, W., Dorado-García, A., Graveland, H., Duim, B., Wagenaar, J. A., Kluytmans, J. A. J. W., & Heederik, D. J. J. (2016). Transmission through air as a possible route of exposure for MRSA. Journal of Exposure Science and Environmental Epidemiology, 2016(26), 263–269. https://doi.org/10.1038/jes.2014.85
Professional publications
van Dijk, M. A. M., Broens, E. M., Wagenaar, J. A., Hordijk, J., & Duim, B. (2016). Project Monitoring Zoönosen en Antimicrobiële Resistentie bij Gezelschapsdieren: Jaarrapportage 2015. Utrecht University.
2015
Scholarly publications
Hordijk, J., Baede, V. O., Timmerman, A. J., Spaninks, M. P., Broens, E. M., Duim, B., & Wagenaar, J. A. (2015). Potential attribution of feed to fecal shedding of ESBL/AmpC producing Enterobacteriaceae in healthy cats. Poster session presented at ASM general meeting.
Zomer, A. L., Duim, B., Broens, E. M., Rossen, J. W. A., Leendertse, M., Wagenaar, J. A., & Hordijk, J. (2015). Genomic epidemiology of multiple Acinetobacter baumannii outbreaks in a veterinary intensive care unit. Poster session presented at KNVM Spring meeting.
Hordijk, J., van Heeswijk, B., Broens, E. M., Wagenaar, J. A., & Duim, B. (2015). Potential equine associated Escherichia coli carrying CTX-M-1 on an IncHI1 plasmid. Poster session presented at ICETAR.
Baede, V. O., Wagenaar, J. A., Broens, E. M., Duim, B., Dohmen, W., Nijsse, R., Timmerman, A. J., & Hordijk, J. (2015). Extended-Spectrum Beta-Lactamase and AmpC-producing Enterobacteriaceae in household dogs: a longitudinal study. Antimicrobial Agents and Chemotherapy, 59(6), 3117-3124. https://doi.org/10.1128/AAC.04576-14
Gilbert, M. J., Kik, M., Miller, W. G., Duim, B., & Wagenaar, J. A. (2015). Campylobacter iguaniorum sp. nov., isolated from reptiles. International journal of systemic and evolutionary microbiology, 65(3), 975-982. https://doi.org/10.1099/ijs.0.000048
2014
Scholarly publications
Peters, C., Duim, B., Broens, E. M., Wagenaar, J. A., & Hordijk, J. (2014). Determination of transferability
and molecular characterization of Extended Spectrum ß-Lactamase producing Escherichia coli isolated form horses.
Spaninks, M. P., Verstappen, K. M. H. W., Hordijk, J., Timmerman, A. J., Broens, E. M., Wagenaar, J. A., & Duim, B. (2014). Molecular epidemiology of canine methicillin-resistant Staphylococcus pseudintermedius in the Netherlands.
van Cleef, B. A. G. L., van Benthem, B. H. B., Verkade, E. J. M., van Rijen, M., Kluytmans-van den Bergh, M. F. Q., Schouls, L. M., Duim, B., Wagenaar, J., Graveland, H., Bos, M. E. H., Heederik, D., & Kluytmans, J. A. J. W. (2014). Dynamics of methicillin-resistant Staphylococcus aureus and methicillin-susceptible Staphylococcus aureus carriage in pig farmers: a prospective cohort study. Clinical Microbiology and Infection, 20(10), O764-O771. https://doi.org/10.1111/1469-0691.12582
Fitzgerald, C., Tu, Z. C., Patrick, M., Stiles, T., Lawson, A. J., Santovenia, M., Gilbert, M. J., van Bergen, M., Joyce, K., Pruckler, J., Stroika, S., Duim, B., Miller, W. G., Loparev, V., Sinnige, J. C., Fields, P. I., Tauxe, R. V., Blaser, M. J., & Wagenaar, J. A. (2014). Campylobacter fetus subsp. testudinum subsp. nov., isolated from humans and reptiles. International journal of systemic and evolutionary microbiology, 64(Pt 9), 2944-2948. https://doi.org/10.1099/ijs.0.057778-0
Gilbert, M. J., Kik, M., Timmerman, A. J., Severs, T. T., Kusters, J. G., Duim, B., & Wagenaar, J. A. (2014). Occurrence, diversity, and host association of intestinal Campylobacter, Arcobacter, and Helicobacter in reptiles. PLoS One, 9(7), [e101599]. https://doi.org/10.1371/journal.pone.0101599
Gilbert, M. J., Miller, W. G., Yee, E., Kik, M., Wagenaar, J. A., & Duim, B. (2014). Complete Genome Sequence of Campylobacter iguaniorum Strain 1485ET, Isolated from a Bearded Dragon (Pogona vitticeps). Genome Announcements, 2(4), [ e00844-14]. https://doi.org/10.1128/genomeA.00844-14
van der Graaf-van Bloois, L., Miller, W. G., Yee, E., Bono, J. L., Rijnsburger, M., Campero, C., Wagenaar, J. A., & Duim, B. (2014). First Closed Genome Sequence of Campylobacter fetus subsp. venerealis bv. intermedius. Genome Announcements, 2(1), [ e01246-13]. https://doi.org/10.1128/genomeA.01246-13
van der Graaf-van Bloois, L., Miller, W. G., Yee, E., Rijnsburger, M., Wagenaar, J. A., & Duim, B. (2014). Inconsistency of Phenotypic and Genomic Characteristics of Campylobacter fetus Subspecies Requires Reevaluation of Current Diagnostics. Journal of Clinical Microbiology, 52(12), 4183-4188. https://doi.org/10.1128/JCM.01837-14
Tulinski, P., Duim, B., Wittink, F. R., Jonker, M. J., Breit, T. M., van Putten, J. P., Wagenaar, J. A., & Fluit, A. C. (2014). Staphylococcus aureus ST398 gene expression profiling during ex vivo colonization of porcine nasal epithelium. BMC Genomics, 15(915). https://doi.org/10.1186/1471-2164-15-915
Verstappen, K. M., Duim, B., van Nes, A., Snijders, S., van Wamel, W. J. B., & Wagenaar, J. A. (2014). Experimental nasal colonization of piglets with methicillin-susceptible and methicillin-resistant Staphylococcus aureus. Veterinary Microbiology, 174(3-4), 483-488. https://doi.org/10.1016/j.vetmic.2014.09.019
2013
Scholarly publications
Solyman, S. M., Black, C. C., Duim, B., Perreten, V., van Duijkeren, E., Wagenaar, J. A., Eberlein, L. C., Sadeghi, L. N., Videla, R., Bemis, D. A., & Kania, S. A. (2013). Multilocus Sequence Typing for Characterization of Staphylococcus pseudintermedius. Journal of Clinical Microbiology, 51, 306-310. https://doi.org/10.1128/JCM.02421-12
van der Graaf-van Bloois, L., van Bergen, M. A. P., van der Wal, F. J., de Boer, A. G., Duim, B., Schmidt, T., & Wagenaar, J. A. (2013). Evaluation of molecular assays for identification Campylobacter fetus species and subspecies and development of a C. fetus specific real-time PCR assay. Journal of Microbiological Methods, 95, 93-97. https://doi.org/10.1016/j.mimet.2013.06.005
Pacholewicz, E., Swart, A., Lipman, L. J. A., Wagenaar, J. A., Havelaar, A. H., & Duim, B. (2013). Propidium monoazide does not fully inhibit the detection of dead Campylobacter on broiler chicken carcasses by qPCR. Journal of Microbiological Methods, 95(1), 32-38. https://doi.org/10.1016/j.mimet.2013.06.003
Gilbert, M. J., Miller, W. G., Yee, E., Blaser, M. J., Wagenaar, J. A., & Duim, B. (2013). Complete Genome Sequence of Campylobacter fetus subsp. testudinum Strain 03-427T. Genome, 1(6), e01002-13. https://doi.org/10.1128/genomeA.01002-13.
Tulinski, P., Fluit, A. C., van Putten, J. P. M., de Bruin, A., Glorieux, S., Wagenaar, J. A., & Duim, B. (2013). An Ex Vivo Porcine Nasal Mucosa Explants Model to Study MRSA Colonization. PLoS One, 8(1), e53783. https://doi.org/10.1371/journal.pone.0053783
van Meurs, M. L. J. G. M., Schellekens, J. J. A., de Neeling, A. J., Duim, B., Schneeberger, P. M., & Hermans, M. H. A. (2013). Real-time PCR to distinguish livestock-associated (ST398) from non-livestock-associated (methicillin-resistant) Staphylococcus aureus. Infection, 41, 339-346. https://doi.org/10.1007/s15010-012-0319-5
Hordijk, J., Schoormans, A., Kwakernaak, M., Duim, B., Broens, E., Dierikx, C., Mevius, D., & Wagenaar, J. A. (2013). High prevalence of fecal carriage of extended spectrum β-lactamase/AmpC-producing Enterobacteriaceae in cats and dogs. Frontiers in Microbiology, 4, [242]. https://doi.org/10.3389/fmicb.2013.00242
2012
Scholarly publications
de Heus, P., Laarhoven, L. M., Duim, B., Bos, M. E. H., Broens, E. M., & Wagenaar, J. A. (2012). Methicilline-resistente Staphylococcus pseudintermedius: recente inzichten voor de gezelschapsdierenpraktijk. Tijdschrift voor Diergeneeskunde, 137(3), 178-181.
https://dspace.library.uu.nl/bitstream/handle/1874/396026/dgk_vmdc_ziektekundigeinfo_mrsa1.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/396026/dgk_vmdc_ziektekundigeinfo_mrsa1.pdf?sequence=1
Tulinski, P., Fluit, A. C., Wagenaar, J. A., Mevius, D. J., van de Vijver, L., & Duim, B. (2012). Methicillin-resistant coagulase-negative staphylococci on pig farms as a reservoir of heterogeneous staphylococcal cassette chromosome mec elements. Applied and Environmental Microbiology, 78(2), 299-304. https://doi.org/10.1128/AEM.05594-11
Gilbert, M. J., Bos, M. E. H., Duim, B., Urlings, B. A. P., Heres, L., Wagenaar, J. A., & Heederik, D. J. J. (2012). Livestock-associated MRSA ST398 carriage in pig slaughterhouse workers related to quantitative environmental exposure. Occupational and Environmental Medicine, 69(7), 472-478. https://doi.org/10.1136/oemed-2011-100069
Boyen, F., Verstappen, K. M. H. W., de Bock, M., Duim, B., Weese, J. S., Schwarz, S., Haesebrouck, F., & Wagenaar, J. A. (2012). In vitro antimicrobial activity of miconazole and polymyxin B against canine meticillin-resistant Staphylococcus aureus and meticillin-resistant Staphylococcus pseudintermedius isolates. Veterinary Dermatology, 23, 381-e70. https://doi.org/10.1111/j.1365-3164.2012.01040.x
Schultsz, C., Jansen, E., Keijzers, W., Rothkamp, A., Duim, B., Wagenaar, J. A., & van der Ende, A. (2012). Differences in the Population Structure of Invasive Streptococcus suis Strains Isolated from Pigs and from Humans in the Netherlands. PLoS One, 7, [e33854]. https://doi.org/10.1371/journal.pone.0033854
Tobias, T. J., Bouma, A., Klinkenberg, D., Daemen, A. J. J. M., Stegeman, J. A., Wagenaar, J. A., & Duim, B. (2012). Detection of Actinobacillus pleuropneumoniae in pigs by real-time quantitative PCR for the apxIVA gene. Veterinary Journal, 193, 557-560. https://doi.org/10.1016/j.tvjl.2012.02.004
Professional publications
van Doorn, J., Duim, B., Figge, M., Heck, M., Melles, D., Molenkamp, R., & Schouls, L. (2012). Microbiële typering, een kwestie van onderscheid maken. Nederlands Tijdschrift voor Medische Microbiologie, 20, 16-20.
2011
Scholarly publications
van Duijkeren, E., ten Horn, L., Wagenaar, J. A., de Bruijn, M., Laarhoven, L., Verstappen, K. M. H. W., de Weerd, W., Meessen, N., & Duim, B. (2011). Suspected Horse-to-Human Transmission of MRSA ST398. Emerging Infectious Diseases, 17(6), 1137-1139. https://doi.org/10.3201/eid1706.101330
Graveland, H., Duim, B., van Duijkeren, E., Heederik, D., & Wagenaar, J. A. (2011). Livestock-associated methicillin-resistant Staphylococcus aureus in animals and humans. International Journal of Medical Microbiology, 301(8), 630-634. https://doi.org/10.1016/j.ijmm.2011.09.004
Laarhoven, L. M., de Heus, P., van Luijn, J., Duim, B., Wagenaar, J. A., & van Duijkeren, E. (2011). Longitudinal Study on Methicillin-Resistant Staphylococcus pseudintermedius in Households. PLoS One, 6(11), [e27788]. https://doi.org/10.1371/journal.pone.0027788
van Duijkeren, E., Kamphuis, M., van der Mije, I. C., Laarhoven, L. M., Duim, B., Wagenaar, J. A., & Houwers, D. J. (2011). Transmission of methicillin-resistant Staphylococcus pseudintermedius between infected dogs and cats and contact pets, humans and the environment in households and veterinary clinics. Veterinary Microbiology, 150, 338-343. https://doi.org/10.1016/j.vetmic.2011.02.012
Professional publications
van Duijkeren, E., Verstappen, K. M. H. W., Duim, B., & Wagenaar, J. A. (Accepted/In press). MRSA bij paarden in Nederland: mogelijke tranmissie naar de mens? Infectieziekten-bulletin, 22(8), 288-289.
2010
Scholarly publications
Cohen Stuart, J. W. T., Dierikx, C. M., Al Naiemi, N., Karczmarek, A., van Hoek, A. H. A. M., Vos, P., Fluit, A. C., Scharringa, J., Duim, B., Mevius, D. J., & Leverstein-van Hall, M. A. (2010). Rapid detection of TEM, SHV and CTX-M extended-spectrum beta-lactamases in Enterobacteriaceae using ligation-mediated amplification with microarray analysis. Journal of Antimicrobial Chemotherapy, 65(7), 1377-1381. http://www.ncbi.nlm.nih.gov/pubmed/20462947
Perreten, V., Kadlec, K., Schwarz, S., Grönlund Andersson, U., Finn, M., Greko, C., Moodley, A., Kania, S. A., Frank, L. A., Bemis, D. A., Franco, A., Iurescia, M., Battisti, A., Duim, B., Wagenaar, J. A., van Duijkeren, E., Weese, J. S., Fitzgerald, J. R., Rossano, A., & Guardabassi, L. (2010). Clonal spread of methicillin-resistant Staphylococcus pseudintermedius in Europe and North America: an international multicentre study. Journal of Antimicrobial Chemotherapy, 65, 1145-1154. https://doi.org/10.1093/jac/dkq078
Kadlec, K., Schwarz, S., Perreten, V., Grönlund Andersson, U., Finn, M., Greko, C., Moodley, A., Kania, S. A., Frank, L. A., Bemis, D. A., Franco, A., Iurescia, M., Battisti, A., Duim, B., Wagenaar, J. A., van Duijkeren, E., Weese, J. S., Fitzgerald, J. R., Rossano, A., & Guardabassi, L. (2010). Molecular analysis of methicillinresistant Staphylococcus pseudintermedius of feline origin from different European countries and North America. Journal of Antimicrobial Chemotherapy, 65, 1826-1837. https://doi.org/10.1093/jac/dkq203
2009
Scholarly publications
Koene, M. G. J., Houwers, D. J., Dijkstra, J. R., Duim, B., & Wagenaar, J. A. (2009). Strain variation within Campylobacter species in fecal samples from dogs and cats. Veterinary Microbiology, 133, 199-205. https://doi.org/10.1016/j.vetmic.2008.06.022
Pannekoek, Y., Visser, C., Duim, B., & Heddema, E. R. (2009). Chlamydophila psittaci infections in The Netherlands. Drugs of Today, 45(suppl.B), 151-157.
2008
Scholarly publications
Verminnen, K., Duquenne, B., De Keukeleire, D., Duim, B., Pannekoek, Y., Braeckman, L., & Vanrompay, D. (2008). Evaluation of a Chlamydophila psittaci infection diagnostic platform for zoonotic risk assessment. Journal of Clinical Microbiology, 46(1), 281-5. https://doi.org/10.1128/JCM.01153-07
2007
Scholarly publications
Bovers, M., Diaz, M. R., Hagen, F., Spanjaard, L., Duim, B., Visser, C. E., Hoogveld, H. L., Scharringa, J., Hoepelman, I. M., Fell, J. W., & Boekhout, T. (2007). Identification of genotypically diverse Cryptococcus neoformans and Cryptococcus gattii isolates by Luminex xMAP technology. Journal of Clinical Microbiology, 45(6), 1874-83. https://doi.org/10.1128/JCM.00223-07
2006
Scholarly publications
Al Naiemi, N., Schipper, K., Duim, B., & Bart, A. (2006). Application of minimal sequence quality values prevents misidentification of the blaSHV type in single bacterial isolates carrying different SHV extended-spectrum beta-lactamase genes. Journal of Clinical Microbiology, 44(5), 1896-8. https://doi.org/10.1128/JCM.44.5.1896-1898.2006
al Naiemi, N., Bart, A., de Jong, M. D., Vandenbroucke-Grauls, C. M., Rietra, P. J. G. M., Debets-Ossenkopp, Y. J., Wever, P. C., Spanjaard, L., Bos, A. J., & Duim, B. (2006). Widely distributed and predominant CTX-M extended-spectrum beta-lactamases in Amsterdam, The Netherlands. Journal of Clinical Microbiology, 44(8), 3012-4. https://doi.org/10.1128/JCM.01112-06
van Doorn, H. R., Bruijnesteijn van Coppenraet, E. S., Duim, B., Vandenbroucke-Grauls, C. M. J. E., Weel, J. F., Dankert, J., Kuijper, E. J., & de Jong, M. D. (2006). Silica-guanidinium thiocyanate-based nucleic acid isolation protocol does not improve sensitivity of two commercial tests for detection of Mycobacterium tuberculosis in respiratory samples. European Journal of Clinical Microbiology & Infectious Diseases, 25(10), 673-5. https://doi.org/10.1007/s10096-006-0194-z
al Naiemi, N., Duim, B., & Bart, A. (2006). A CTX-M extended-spectrum beta-lactamase in Pseudomonas aeruginosa and Stenotrophomonas maltophilia. Journal of Medical Microbiology, 55(Pt 11), 1607-8. https://doi.org/10.1099/jmm.0.46704-0
Heddema, E. R., van Hannen, E. J., Duim, B., Vandenbroucke-Grauls, C. M. J. E., & Pannekoek, Y. (2006). Genotyping of Chlamydophila psittaci in human samples. Emerging Infectious Diseases, 12(12), 1989-90. https://doi.org/10.3201/eid1212.051633
Heddema, E. R., Hannen, E. J., Duim, B., de Jongh, B. M., Kaan, J. A., van Kessel, R., Lumeij, J. T., Visser, C. E., & Vandenbroucke-Grauls, C. M. J. E. (2006). An outbreak of psittacosis due to Chlamydophila psittaci genotype A in a veterinary teaching hospital. Journal of Medical Microbiology, 55, 1571-1575.
Duim, B., & Wagenaar, J. A. (2006). Amplified Fragment Lenght Polymorphism (AFLP) analysis and protein profiling for identification Campylobacter lari genogroups. In Diagnostic Bacteriology Protocols (pp. 119-130). (Methods in Molecular Biology; Vol. 345). Humana Press. https://doi.org/10.1385/1-59745-143-6:119
2005
Scholarly publications
Schultz, M. J., Visser, C., & Duim, B. (2005). Quantitative real-time polymerase chain reaction for detection of bacteria: wanted, dead or alive? Critical Care Medicine, 33(11), 2720; author reply 2720-1.
2004
Scholarly publications
Duim, B., Wagenaar, J. A., Dijkstra, J. R., Goris, J., Endtz, H. P., & Vandamme, P. A. R. (2004). Identification of distinct Campylobacter lari genogroups by amplified fragment length polymorphism and protein electrophoretic profiles. Applied and Environmental Microbiology, 70(1), 18-24.
Bruisten, S. M., Noordhoek, G. T., van den Brule, A. J. C., Duim, B., Boel, C. H. E., El-Faouzi, K., du Maine, R., Mulder, S., Luijt, D., & Schirm, J. (2004). Multicenter validation of the cppB gene as a PCR target for detection of Neisseria gonorrhoeae. Journal of Clinical Microbiology, 42(9), 4332-4. https://doi.org/10.1128/JCM.42.9.4332-4334.2004
Koene, M. G. J., Houwers, D. J., Dijkstra, J. R., Duim, B., & Wagenaar, J. A. (2004). Simultaneous presence of multiple Campylobacter species in dogs. Journal of Clinical Microbiology, 42(2), 819-821.
2003
Scholarly publications
Agbo, E. C., Duim, B., Majiwa, P. A. O., Büscher, P., Claassen, E., & te Pas, M. F. W. (2003). Multiplex-endonuclease genotyping approach (MEGA): a tool for the fine-scale detection of unlinked polymorphic DNA markers. Chromosoma, 111(8), 518-24. https://doi.org/10.1007/s00412-002-0228-y
Schouls, L. M., Reulen, S., Duim, B., Wagenaar, J. A., Willems, R. J. L., Dingle, K. E., Colles, F. M., & Van Embden, J. D. A. (2003). Comparative genotyping of Campylobacter jejuni by amplified fragment length polymorphism, multilocus sequence typing, and short repeat sequencing: strain diversity, host range, and recombination. Journal of Clinical Microbiology, 41(1), 15-26.
Duim, B., Godschalk, P. C. R., van den Braak, N., Dingle, K. E., Dijkstra, J. R., Leyde, E., van der Plas, J., Colles, F. M., Endtz, H. P., Wagenaar, J. A., Maiden, M. C. J., & van Belkum, A. (2003). Molecular evidence for dissemination of unique Campylobacter jejuni clones in Curaçao, Netherlands Antilles. Journal of Clinical Microbiology, 41(12), 5593-7.
2002
Scholarly publications
Wassenaar, T. M., Wagenaar, J. A., Rigter, A., Fearnley, C., Newell, D. G., & Duim, B. (2002). Homonucleotide stretches in chromosomal DNA of Campylobacter jejuni display high frequency polymorphism as detected by direct PCR analysis. FEMS Microbiology Letters, 212(1), 77-85.
Dingle, K. E., Colles, F. M., Ure, R., Wagenaar, J. A., Duim, B., Bolton, F. J., Fox, A. J., Wareing, D. R. A., & Maiden, M. C. J. (2002). Molecular characterization of Campylobacter jejuni clones: a basis for epidemiologic investigation. Emerging Infectious Diseases, 8(9), 949-55. https://doi.org/10.3201/eid0809.020122
de Boer, P., Wagenaar, J. A., Achterberg, R. P., van Putten, J. P. M., Schouls, L. M., & Duim, B. (2002). Generation of Campylobacter jejuni genetic diversity in vivo. Molecular Microbiology, 44(2), 351-359. https://doi.org/10.1046/j.1365-2958.2002.02930.x
2001
Scholarly publications
Wolfs, T. F. W., Duim, B., Geelen, S. P. M., Rigter, A., Thomson-Carter, F., Fleer, A., & Wagenaar, J. A. (2001). Neonatal sepsis by Campylobacter jejuni: genetically proven transmission from a household puppy. Clinical Infectious Diseases, 32(5), E97-E99. https://doi.org/10.1086/319224
Manning, G., Duim, B., Wassenaar, T., Wagenaar, J. A., Ridley, A., & Newell, D. G. (2001). Evidence for a genetically stable strain of Campylobacter jejuni. Applied and Environmental Microbiology, 67(3), 1185-1189. https://doi.org/10.1128/AEM.67.3.1185-1189.2001
Hänninen, M. L., Perko-Mäkelä, P., Rautelin, H., Duim, B., & Wagenaar, J. A. (2001). Genomic relatedness within five common Finnish Campylobacter jejuni pulsed-field gel electrophoresis genotypes studied by amplified fragment length polymorphism analysis, ribotyping, and serotyping. Applied and Environmental Microbiology, 67(4), 1581-1586. https://doi.org/10.1128/AEM.67.4.1581-1586.2001
Duim, B., Vandamme, P. A., Rigter, A., Laevens, S., Dijkstra, J. R., & Wagenaar, J. (2001). Differentiation of Campylobacter species by AFLP fingerprinting. Microbiology, 147(Pt 10), 2729-37.
Wagenaar, J. A., van Bergen, M. A. P., Newell, D. G., Grogono-Thomas, R., & Duim, B. (2001). Comparative study using amplified fragment length polymorphism fingerprinting, PCR genotyping, and phenotyping to differentiate Campylobacter fetus strains isolated from animals. Journal of Clinical Microbiology, 39(6), 2283-2286. https://doi.org/10.1128/JCM.39.6.2283-2286.2001
2000
Scholarly publications
Duim, B., Ang, C. W., van Belkum, A., Rigter, A., van Leeuwen, N. W. J., Endtz, H. P., & Wagenaar, J. A. (2000). Amplified fragment length polymorphism analysis of Campylobacter jejuni strains isolated from chickens and from patients with gastroenteritis or Guillain-Barré or Miller Fisher syndrome. Applied and Environmental Microbiology, 66(9), 3917-3923. http://10.1128/AEM.66.9.3917-3923.2000
Endtz, H. P., Ang, C. W., van Den Braak, N., Duim, B., Rigter, A., Price, L. J., Woodward, D. L., Rodgers, F. G., Johnson, W. M., Wagenaar, J. A., Jacobs, B. C., Verbrugh, H. A., & van Belkum, A. (2000). Molecular characterization of Campylobacter jejuni from patients with Guillain-Barré and Miller Fisher syndromes. Journal of Clinical Microbiology, 38(6), 2297-301.
Wassenaar, T. M., Fry, B. N., Lastovica, A. J., Wagenaar, J. A., Coloe, P. J., & Duim, B. (2000). Genetic characterization of Campylobacter jejuni O:41 isolates in relation with Guillain-Barré syndrome. Journal of Clinical Microbiology, 38(2), 874-6.
de Boer, P., Duim, B., Rigter, A., van der Plas, J., Jacobs-Reitsma, W. F., & Wagenaar, J. A. (2000). Computer-assisted analysis and epidemiological value of genotyping methods for Campylobacter jejuni and Campylobater coli. Journal of Clinical Microbiology, 38(5), 1940-1946.
1999
Scholarly publications
Duim, B., Wassenaar, T. M., Rigter, A., & Wagenaar, J. (1999). High-resolution genotyping of Campylobacter strains isolated from poultry and humans with amplified fragment length polymorphism fingerprinting. Applied and Environmental Microbiology, 65(6), 2369-75.
Savelkoul, P. H. M., Aarts, H. J. M., De Haas, J., Dijkshoorn, L., Duim, B., Otsen, M., Rademaker, J. L. W., Schouls, L., & Lenstra, J. A. (1999). Amplified-fragment length polymorphism analysis: The State of an Art. Journal of Clinical Microbiology, 37(10), 3083-3091.