Publicaties
2023
Wetenschappelijke publicaties
Cui, H., Elford, J. D., Alitalo, O., Perez-Pardo, P., Tampio, J., Huttunen, K. M., Kraneveld, A., Forsberg, M. M., Myöhänen, T. T., & Jalkanen, A. J. (2023). Nigrostriatal 6-hydroxydopamine lesions increase alpha-synuclein levels and permeability in rat colon. Neurobiology of Aging, 129, 62-71. https://doi.org/10.1016/j.neurobiolaging.2023.05.007
Rojas-Velazquez, D., Tonda, A., Rodriguez-Guerra, I., Kraneveld, A. D., & Lopez-Rincon, A. (2023). Multi-objective Evolutionary Discretization of Gene Expression Profiles: Application to COVID-19 Severity Prediction. In International Conference on the Applications of Evolutionary Computation (Part of EvoStar): EvoApplications 2023: Applications of Evolutionary Computation pp 703–717 (pp. 703-717). [Chapter 45] (Applications of Evolutionary Computation; Vol. 13989). https://doi.org/10.1007/978-3-031-30229-9_45
Martin-Almeida, M., Perez-Garcia, J., Herrera-Luis, E., Rosa-Baez, C., Gorenjak, M., Neerincx, A. H., Sardón-Prado, O., Toncheva, A. A., Harner, S., Wolff, C., Brandstetter, S., Valletta, E., Abdel-Aziz, M. I., Hashimoto, S., Berce, V., Corcuera-Elosegui, P., Korta-Murua, J., Buntrock-Döpke, H., Vijverberg, S. J. H., ... Consortium, O. B. O. T. S. (2023). Epigenome-Wide Association Studies of the Fractional Exhaled Nitric Oxide and Bronchodilator Drug Response in Moderate-to-Severe Pediatric Asthma. Biomedicines, 11(3), [676]. https://doi.org/10.3390/biomedicines11030676
Blankestijn, J. M., Lopez-Rincon, A., Neerincx, A. H., Vijverberg, S. J. H., Hashimoto, S., Gorenjak, M., Sardón Prado, O., Corcuera-Elosegui, P., Korta-Murua, J., Pino-Yanes, M., Potočnik, U., Bang, C., Franke, A., Wolff, C., Brandstetter, S., Toncheva, A. A., Kheiroddin, P., Harner, S., Kabesch, M., ... Consortium, T. S. (2023). Classifying asthma control using salivary and fecal bacterial microbiome in children with moderate-to-severe asthma. Pediatric Allergy and Immunology, 34(2), 1-10. [e13919]. https://doi.org/10.1111/pai.13919
Sips, A. S. M., Severeijns, N. R., Kraneveld, A. D., Garssen, J., & Verster, J. C. (2023). Reduced Immune Fitness and Job Performance: Absenteeism, Presenteeism, and Associated Costs for the Dutch Economy. International Journal of Environmental Research and Public Health, 20(3), [1761]. https://doi.org/10.3390/ijerph20031761
2022
Wetenschappelijke publicaties
Rojas-Velazquez, D., Kidwai, S., Perez-Pardo, P., Oberski, D., Garssen, J., Kraneveld, A. D., & Lopez-Rincon, A. (2022). Towards a reduced feature selection pipeline in 16s rRNA microbiome data using Machine Learning. In The 9th Beneficial Microbes Conference https://hal.science/hal-04097623
Mukherjee, R., Somovilla, V. J., Chiodo, F., Bruijns, S., Pieters, R. J., Garssen, J., van Kooyk, Y., Kraneveld, A. D., & van Bergenhenegouwen, J. (2022). Human Milk Oligosaccharide 2′-Fucosyllactose Inhibits Ligand Binding to C-Type Lectin DC-SIGN but Not to Langerin. International Journal of Molecular Sciences, 23(23), [14745]. https://doi.org/10.3390/ijms232314745
https://dspace.library.uu.nl/bitstream/handle/1874/426693/ijms_23_14745_v2.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/426693/ijms_23_14745_v2.pdf?sequence=1
Ayechu-Muruzabal, V., de Boer, M., Blokhuis, B., Berends, A. J., Garssen, J., Kraneveld, A. D., van’t Land, B., & Willemsen, L. E. M. (2022). Epithelial-derived galectin-9 containing exosomes contribute to the immunomodulatory effects promoted by 2’-fucosyllactose and short-chain galacto- and long-chain fructo-oligosaccharides. Frontiers in Immunology, 13, [1026031]. https://doi.org/10.3389/fimmu.2022.1026031
Verster, J., Kraneveld, A., & Garssen, J. (2022). The Assessment of Immune Fitness. Journal of Clinical Medicine, 12(1), 1-12. [22]. https://doi.org/10.3390/jcm12010022
Pelgrim, C. E., van Ark, I., van Berkum, R. E., Schuitemaker-Borneman, A. M., Flier, I., Leusink-Muis, T., Janbazacyabar, H., Diks, M. A. P., Gosker, H. R., Kelders, M. C. J. M., Langen, R. C. J., Schols, A. M. W. J., Hageman, R. J. J., Braber, S., Garssen, J., Folkerts, G., van Helvoort, A., & Kraneveld, A. D. (2022). Effects of a nutritional intervention on impaired behavior and cognitive function in an emphysematous murine model of COPD with endotoxin-induced lung inflammation. Frontiers in Nutrition, 9, [1010989]. https://doi.org/10.3389/fnut.2022.1010989
Zheng, Y., Prince, N. Z., Peralta Marzal, L. N., Ahmed, S., Garssen, J., Perez Pardo, P., & Kraneveld, A. D. (2022). The Autism Spectrum Disorder-Associated Bacterial Metabolite p-Cresol Derails the Neuroimmune Response of Microglial Cells Partially via Reduction of ADAM17 and ADAM10. International Journal of Molecular Sciences, 23(19), [11013]. https://doi.org/10.3390/ijms231911013
Wang, L., van Iersel, L. E. J., Pelgrim, C. E., Lu, J., van Ark, I., Leusink-Muis, T., Gosker, H. R., Langen, R. C. J., Schols, A. M. W. J., Argilés, J. M., van Helvoort, A., Kraneveld, A. D., Garssen, J., Henricks, P. A. J., Folkerts, G., & Braber, S. (2022). Effects of Cigarette Smoke on Adipose and Skeletal Muscle Tissue: In Vivo and In Vitro Studies. Cells, 11(18), 1-20. [2893]. https://doi.org/10.3390/cells11182893
van Oostrom, E. C., Mulder, K. EW., Verheul, M. CE., Hendriksen, P. A., Thijssen, S., Kraneveld, A. D., Vlieg-Boerstra, B., Garssen, J., & Verster, J. C. (2022). A healthier daily diet is associated with greater immune fitness. PharmaNutrition, 21, 1-6. [100306]. https://doi.org/10.1016/j.phanu.2022.100306
Mouhrim, N., Tonda, A., Rodríguez-Guerra, I., Kraneveld, A. D., & Rincon, A. L. (2022). An evolutionary approach to the discretization of gene expression profiles to predict the severity of COVID-19. In J. E. Fieldsend (Ed.), GECCO '22: Proceedings of the Genetic and Evolutionary Computation Conference Companion (pp. 731-734). Association for Computing Machinery. https://doi.org/10.1145/3520304.3529001
kiani, P., Mulder, K., Balikji, J., Kraneveld, A., garssen, J., & Verster, J. (2022). Pandemic Preparedness: Maintaining Adequate Immune Fitness by Attaining a Normal, Healthy Body Weight. Journal of Clinical Medicine, 11(14), [3933]. https://doi.org/10.3390/jcm11143933
Oost, M. J., Ijaz, A., van Haarlem, D. A., van Summeren, K., Velkers, F. C., Kraneveld, A. D., Venema, K., Jansen, C. A., Pieters, R. H. H., & Ten Klooster, J. P. (2022). Chicken-derived RSPO1 and WNT3 contribute to maintaining longevity of chicken intestinal organoid cultures. Scientific Reports, 12(1), 1-12. [10563]. https://doi.org/10.1038/s41598-022-14875-7
Wang, L., Pelgrim, C. E., Peralta Marzal, L. N., Korver, S., van Ark, I., Leusink-Muis, T., van Helvoort, A., Keshavarian, A., Kraneveld, A. D., Garssen, J., Henricks, P. A. J., Folkerts, G., & Braber, S. (2022). Changes in intestinal homeostasis and immunity in a cigarette smoke- and LPS-induced murine model for COPD: the lung-gut axis. American journal of physiology. Lung cellular and molecular physiology, 323(3), L266-L280. https://doi.org/10.1152/ajplung.00486.2021
Pelgrim, C. E., Wang, L., Peralta Marzal, L. N., Korver, S., van Ark, I., Leusink-Muis, T., Braber, S., Folkerts, G., Garssen, J., van Helvoort, A., & Kraneveld, A. D. (2022). Increased exploration and hyperlocomotion in a cigarette smoke and LPS induced murine model of COPD: linking pulmonary and systemic inflammation with the brain. American journal of physiology. Lung cellular and molecular physiology, 323(3), L251-L265. https://doi.org/10.1152/ajplung.00485.2021
Berdenis van Berlekom, A., Kübler, R., Hoogeboom, J. W., Vonk, D., Sluijs, J. A., Pasterkamp, R. J., Middeldorp, J., Kraneveld, A. D., Garssen, J., Kahn, R. S., Hol, E. M., de Witte, L. D., & Boks, M. P. (2022). Exposure to the Amino Acids Histidine, Lysine, and Threonine Reduces mTOR Activity and Affects Neurodevelopment in a Human Cerebral Organoid Model. Nutrients, 14(10), 1-19. [2175]. https://doi.org/10.3390/nu14102175
Kiani, P., Balikji, J., Kraneveld, A. D., Garssen, J., Bruce, G., & Verster, J. C. (2022). Pandemic Preparedness: The Importance of Adequate Immune Fitness. Journal of Clinical Medicine, 11(9), 1-9. [2442]. https://doi.org/10.3390/jcm11092442
Ayechu-Muruzabal, V., van de Kaa, M., Mukherjee, R., Garssen, J., Stahl, B., Pieters, R. J., Van’T Land, B., Kraneveld, A. D., & Willemsen, L. E. M. (2022). Modulation of the Epithelial-Immune Cell Crosstalk and Related Galectin Secretion by DP3-5 Galacto-Oligosaccharides and β-3′galactosyllactose. Biomolecules, 12(3), 1-15. [384]. https://doi.org/10.3390/biom12030384
Pelgrim, C. E., van Ark, I., Leusink-Muis, T., Brans, M. A. D., Braber, S., Garssen, J., van Helvoort, A., Kraneveld, A. D., & Folkerts, G. (2022). Intratracheal administration of solutions in mice; development and validation of an optimized method with improved efficacy, reproducibility and accuracy. Journal of Pharmacological and Toxicological Methods, 114, 1-7. [107156]. https://doi.org/10.1016/j.vascn.2022.107156
Chakrabarti, A., Geurts, L., Hoyles, L., Iozzo, P., Kraneveld, A. D., La Fata, G., Miani, M., Patterson, E., Pot, B., Shortt, C., & Vauzour, D. (2022). The microbiota–gut–brain axis: pathways to better brain health. Perspectives on what we know, what we need to investigate and how to put knowledge into practice. Cellular and Molecular Life Sciences, 79(2), 1-15. [80]. https://doi.org/10.1007/s00018-021-04060-w
Szklany, K., Engen, P. A., Naqib, A., Green, S. J., Keshavarzian, A., Rincon, A. L., Siebrand, C. J., Diks, M. A. P., van de Kaa, M., Garssen, J., Knippels, L. M. J., & Kraneveld, A. D. (2022). Dietary supplementation throughout life with non‐digestible oligosaccharides and/or n‐3 poly‐unsaturated fatty acids in healthy mice modulates the gut–immune system–brain axis. Nutrients, 14(1), 1-29. [173]. https://doi.org/10.3390/nu14010173
U-BIOPRED Study Group (2022). A multi-omics approach to delineate sputum microbiome-associated asthma inflammatory phenotypes. European Respiratory Journal, 59(1), 1-6. [2102603]. https://doi.org/10.1183/13993003.02603-2021
Szklany, K., Kraneveld, A. D., Tiemessen, M. M., Garssen, J., & Knippels, L. M. J. (2022). Nutritional Interventions to Prevent the Development of Atopic Diseases: A Focus on Cow's Milk Allergy. In C. Traidl-Hoffmann, T. Zuberbier, & T. Werfel (Eds.), Allergic Diseases – From Basic Mechanisms to Comprehensive Management and Prevention (Vol. 268, pp. 471-486). (Handbook of Experimental Pharmacology; Vol. 268). Springer. https://doi.org/10.1007/164_2021_480
2021
Wetenschappelijke publicaties
Seyed Toutounchi, N., Braber, S., van’t Land, B., Thijssen, S., Garssen, J., Kraneveld, A. D., Folkerts, G., & Hogenkamp, A. (2021). Exposure to Deoxynivalenol During Pregnancy and Lactation Enhances Food Allergy and Reduces Vaccine Responsiveness in the Offspring in a Mouse Model. Frontiers in Immunology, 12, 1-15. [797152]. https://doi.org/10.3389/fimmu.2021.797152
Zheng, Y., Bek, M. K., Prince, N. Z., Peralta Marzal, L. N., Garssen, J., Perez Pardo, P., & Kraneveld, A. D. (2021). The Role of Bacterial-Derived Aromatic Amino Acids Metabolites Relevant in Autism Spectrum Disorders: A Comprehensive Review. Frontiers in Neuroscience, 15, 1-17. [738220]. https://doi.org/10.3389/fnins.2021.738220
Oost, M. J., Velkers, F. C., Kraneveld, A. D., & Venema, K. (2021). Development of the in vitro Cecal Chicken ALIMEntary tRact mOdel-2 to Study Microbiota Composition and Function. Frontiers in Microbiology, 12, 1-12. [726447]. https://doi.org/10.3389/fmicb.2021.726447
Peralta-Marzal, L. N., Prince, N., Bajic, D., Roussin, L., Naudon, L., Rabot, S., Garssen, J., Kraneveld, A. D., & Perez-Pardo, P. (2021). The impact of gut microbiota-derived metabolites in autism spectrum disorders. International Journal of Molecular Sciences, 22(18), 1-25. [10052]. https://doi.org/10.3390/ijms221810052
Toutounchi, N. S., Braber, S., Hogenkamp, A., Varasteh, S., Cai, Y., Wehkamp, T., Tims, S., Leusink-Muis, T., van Ark, I., Wiertsema, S., Stahl, B., Kraneveld, A. D., Garssen, J., Folkerts, G., & Van’T Land, B. (2021). Human milk oligosaccharide 3′-gl improves influenza-specific vaccination responsiveness and immunity after deoxynivalenol exposure in preclinical models. Nutrients, 13(9), [3190]. https://doi.org/10.3390/nu13093190
Rincon, A. L., Romero, C. A. P., Maldonado, L. M., Claassen, E., Garssen, J., Kraneveld, A. D., & Tonda, A. (2021). Design of specific primer sets for SARS-CoV-2 variants using evolutionary algorithms. In F. Chicano (Ed.), GECCO '21: Proceedings of the Genetic and Evolutionary Computation Conference (pp. 982-990). Association for Computing Machinery. https://doi.org/10.1145/3449639.3459359
Lopez-Rincon, A., Roozendaal, D. S., Spierenburg, H. M., Holm, A. L., Metcalf, R., Perez-Pardo, P., Kraneveld, A. D., & Tonda, A. (2021). Modelling Asthma Patients’ Responsiveness to Treatment Using Feature Selection and Evolutionary Computation. In P. A. Castillo, & J. L. Jiménez Laredo (Eds.), Applications of Evolutionary Computation - 24th International Conference, EvoApplications 2021, Held as Part of EvoStar 2021, Proceedings (Vol. 12694, pp. 359-372). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 12694 LNCS). Springer Science and Business Media Deutschland GmbH. https://doi.org/10.1007/978-3-030-72699-7_23
Abdel-Aziz, M. I., Neerincx, A. H., Vijverberg, S. J. H., Hashimoto, S., Brinkman, P., Gorenjak, M., Toncheva, A. A., Harner, S., Brandstetter, S., Wolff, C., Perez-Garcia, J., Hedman, A. M., Almqvist, C., Corcuera-Elosegui, P., Korta-Murua, J., Sardón-Prado, O., Pino-Yanes, M., Potočnik, U., Kabesch, M., ... On Behalf Of The SysPharmPediA Consortium (2021). A System Pharmacology Multi-Omics Approach toward Uncontrolled Pediatric Asthma. Journal of Personalized Medicine, 11(6), [484]. https://doi.org/10.3390/jpm11060484
Wang, L., Pelgrim, C. E., Swart, D. H., Krenning, G., van der Graaf, A. C., Kraneveld, A. D., Leusink-Muis, T., van Ark, I., Garssen, J., Folkerts, G., & Braber, S. (2021). SUL-151 Decreases Airway Neutrophilia as a Prophylactic and Therapeutic Treatment in Mice after Cigarette Smoke Exposure. International Journal of Molecular Sciences, 22(9), 1-17. [4991]. https://doi.org/10.3390/ijms22094991
Amsterdam Mucociliary Clearance Disease (AMCD) Research Group and the Amsterdam UMC Breath Research Group (2021). Targeted exhaled breath analysis for detection of Pseudomonas aeruginosa in cystic fibrosis patients. Journal of Cystic Fibrosis. https://doi.org/10.1016/j.jcf.2021.04.015
Kiani, P., Merlo, A., Saeed, H. M., Benson, S., Bruce, G., Hoorn, R., Kraneveld, A. D., van de Loo, A. J. A. E., Severeijns, N. R., Sips, A. S. M., Scholey, A., Garssen, J., & Verster, J. C. (2021). Immune fitness and the psychosocial and health consequences of the covid-19 pandemic lockdown in the netherlands: Methodology and design of the clofit study. European Journal of Investigation in Health, Psychology and Education, 11(1), 199-218. https://doi.org/10.3390/ejihpe11010016
van de Loo, A. J., Raasveld, S. J., Hogewoning, A., Zeeuw, R. D., Bosma, E. R., Bouwmeester, N. H., Lukkes, M., Knipping, K., Mackus, M., Kraneveld, A. D., Brookhuis, K. A., Garssen, J., Scholey, A., & Verster, J. C. (2021). Immune Responses after Heavy Alcohol Consumption: Cytokine Concentrations in Hangover-Sensitive and Hangover-Resistant Drinkers. Healthcare (Basel, Switzerland), 9(4), [395]. https://doi.org/10.3390/healthcare9040395
Metselaar, P. I., Hos, C., Welting, O., Bosch, J. A., Kraneveld, A. D., de Jonge, W. J., & Te Velde, A. A. (2021). Ambiguity about Splicing Factor 3b Subunit 3 (SF3B3) and Sin3A Associated Protein 130 (SAP130). Cells, 10(3), 1-8. [590]. https://doi.org/10.3390/cells10030590
Zheng, Y., Verhoeff, T. A., Pardo, P. P., Garssen, J., & Kraneveld, A. D. (2021). The Gut-Brain Axis in Autism Spectrum Disorder: A Focus on the Metalloproteases ADAM10 and ADAM17. International Journal of Molecular Sciences, 22(1), 1-27. [118]. https://doi.org/10.3390/ijms22010118
On behalf the U-BIOPRED Consortium (2021). Association of endopeptidases, involved in SARS-CoV-2 infection, with microbial aggravation in sputum of severe asthma. Allergy: European Journal of Allergy and Clinical Immunology, 76(6), 1917-1921. https://doi.org/10.1111/all.14731
Perez-Pardo, P., Grobben, Y., Willemsen-Seegers, N., Hartog, M., Tutone, M., Muller, M., Adolfs, Y., Pasterkamp, R. J., Vu-Pham, D., van Doornmalen, A. M., van Cauter, F., de Wit, J., Gerard Sterrenburg, J., Uitdehaag, J. C. M., de Man, J., Buijsman, R. C., Zaman, G. J. R., & Kraneveld, A. D. (2021). Pharmacological validation of TDO as a target for Parkinson’s disease. FEBS Journal, 288(14), 4311-4331. https://doi.org/10.1111/febs.15721
2020
Wetenschappelijke publicaties
Lopez Rincon, A., Tonda, A., Mendoza-Maldonado, L., Claassen, E., Garssen, J., & Kraneveld, A. D. (2020). Accurate Identification of SARS-CoV-2 from Viral Genome Sequences using Deep Learning. (bioRxiv). bioRxiv. https://www.biorxiv.org/content/10.1101/2020.03.13.990242v1
2019
Wetenschappelijke publicaties
Van De Loo, A. J., Mackus, M. M., Merlo, A., Habers, L., Devenney, L. E., Knipping, K., Garssen, J., Kraneveld, A. D., Bruce, G., & Verster, J. C. (2019). Acute alcohol effects on cytokine concentrations in healthy young adults. 444-445. https://doi.org/10.1111/all.13961