Publications

PhD theses:
1907 - 2013


Scientific publications:

2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 | 1998 | 1997 | 1996 | 1995 | 1994 | 1993 | Before 1993

In press

• Bakker, P.A.H.M., Doornbos, R.F., Zamioudis, C., Berendsen, R.L. and Pieterse, C.M.J. (2013). Induced systemic resistance and the rhizosphere microbiome. Plant Pathol. J. 00: 000-000.
• Bakker, P.A.H.M., Berendsen, R.L., Doornbos, R.F., Wintermans, P.C.A. and Pieterse, C.M.J. (2013). The rhizospere revisited: root microbiomics. Frontiers in Plant Science 00: 00.
• Berendsen, R.L., Kalkhove, S.I.C., Lugones, L.G., Baars, J.J.P., Wösten, H.A.B. and Bakker, P.A.H.M. (2013). Effects of the mushroom-volatile 1-octen-3-ol on dry bubble disease. Applied Microbiology and Biotechnology 00: 000-000.
• De Wit, M., Spoel, S.H., Sanchez-Perez, G.F., Gommers, C.M.M., Pieterse, C.M.J., Voesenek, L.A.C.J. and Pierik, R. (2013). Perception of low Red:Far-red ratio compromises both salicylic acid- and jasmonic acid-dependent pathogen defences in Arabidopsis. Plant Journal 00: 000-000.
• Giron, D., Frago, E., Glevarec, G., Pieterse, C.M.J. and Dicke, M. (2013). Cytokinins as key regulators in plant–microbe–insect interactions: connecting plant growth and defence. Functional Ecology 00: 000-000.
• Jiang, R.Y.H. et al. (2013). Distinctive expansions of the potential virulence genes in the genome of the oomycete fish pathogen Saprolegnia parasitica. PLoS Genetics 00: 000-000.
• Lapin, D. and Van den Ackerveken, G. (2013) Susceptibility to plant disease: more than a failure of host immunity. Trends Plant Sci. 00: 000-000.
• Lopes da Veiga, R.S., Faccio, A., Genre, A., Pieterse, C.M.J., Bonfante, P., Van der Heijden, M.G.A. (2013). Arbuscular mycorrhizal fungi reduce growth and infect roots of the non-host plant Arabidopsis thaliana. Plant Cell & Environment 00: 000-000.
• Pineda, A., Dicke, M., Pieterse, C.M.J. and Pozo, M.J. (2013). Beneficial microbes in a changing environment: are they always helping plants to deal with insects? Functional Ecology 00: 000-000.
• Ponzio, C., Gols, R., Pieterse, C.M.J. and Dicke, M. (2013). Ecological and phytohormonal aspects of plant volatile emission in response to single and dual infestations with herbivores and phytopathogens. Functional Ecology 00: 000-000.
• Snoek, L.B., Terpstra, I.R., Dekter, R., Van den Ackerveken, G., and Peeters, A.J.M. (2013) Genetical genomics reveals large scale genotype-by-environment interactions in Arabidopsis thaliana. Frontiers in Statistical Genetics and Methodology, accepted for publication.

2013

2012

• Ahmad, S. (2012). Plant basal resistance: genetics, biochemistry and impacts on plant-biotic interactions. pp. 1-145, Ph.D. Thesis Utrecht University (pdf). 
• Bakker, P.A.H.M. and Mercado-Blanco, J. (2012). The rhizosphere microbiota and plant health. Plant and Soil Virtual Issue 2 (pdf).
• Berendsen, R.L., Kalkhove, S.I.C., Lugones, L.G., Baars, J.J.P., Wösten, H.A.B., and Bakker, P.A.H.M. (2012). Effects of fluorescent Pseudomonas spp. isolated from mushroom cultures on Lecanicillium fungicola. Biological Control 63: 210-221 (pdf).
• Berendsen, R.L., Kalkhove, S.I.C., Lugones, L.G., Wösten, H.A.B. and Bakker, P.A.H.M. (2012). Germination of Lecanicillium fungicola in the mycosphere of Agaricus bisporus. Environmental Microbiology Reports 4: 227-233 (pdf).
• Berendsen, R.L., Pieterse, C.M.J. and Bakker, P.A.H.M. (2012). The rhizosphere microbiome and plant health. Trends Plant Sci. 17: 478-486 (pdf).
• Cabral, A., Oome, S., Sander, N., Küfner, I., Nürnberger, T., and Van den Ackerveken, G. (2012) Nontoxic Nep1-like proteins of the downy mildew pathogen Hyaloperonospora arabidopsidis; repression of necrosis-inducing activity by a surface-exposed region. Mol. Plant-Microbe Interact. 25: 697-708 (pdf).
• Cerrudo, I., Keller, M.M., Cargnel, M.D., Demkura, P.V., De Wit, M., Patitucci, M.S., Pierik, R., Pieterse, C.M.J. and Ballaré, C.L. (2012). Low Red:Far-Red ratios reduce Arabidopsis resistance to Botrytis cinerea and jasmonate responses via a COI1-JAZ10-dependent, salicylic acid-independent mechanism. Plant Physiol. 158: 2042–2052 (pdf).
• Cruz-Ramírez, A., Díaz-Triviño, S., Blilou, I., Grieneisen, V.A., Sozzani, R., Zamioudis, C., Miskolczi, P., Nieuwland, J., Benjamins, R., Dhonukshe, P., Caballero-Pérez, J., Horvath, B., Long, Y., Mähönen, A.P., Zhang, H., Xu, J., Murray, J.A.H., Benfey, P.N., Bako, L., Marée, A.F.M. and Scheres, B. (2012). A bistable circuit involving SCARECROW-RETINOBLASTOMA integrates cues to inform asymmetric stem cell division. Cell 150: 1002-1015 (pdf).
• Djavaheri, M., Mercado-Blanco, J., Versluis, C., Meyer, J.-M., Van Loon, L.C., and Bakker, P.A.H.M. (2012). Iron-regulated metabolites produced by Pseudomonas fluorescens WCS374r are not required for eliciting induced systemic resistance (ISR) against Pseudomonas syringae pv. tomato in Arabidopsis. MicrobiologyOpen 1: 311-325 (pdf).
• Doornbos, R.F., Van Loon, L.C. and Bakker, P.A.H.M. (2012). Impact of root exudates and plant defense signaling on bacterial communities in the rhizosphere. Agronomy for Sustainable Development 32: 227-243 (pdf).
• Lapin, D., Meyer, R.C., Takahashi, H., Bechtold, U., and Van den Ackerveken, G. (2012) Broad-spectrum resistance of Arabidopsis C24 to downy mildew is mediated by different combinations of isolate-specific loci. New Phytol. 196: 1171–1181 (pdf)
• Lopes da Veiga, R.S. (2012). Biological weed control with soil fungi? Antagonistic effects of arbuscular mycorrhizal fungi on the growth of weeds. pp. 1-139, Ph.D. Thesis Utrecht University (pdf). 
• Lopes da Veiga, R.S., Howard, K. and Van der Heijden, M.G.A. (2012). No evidence for allelopathic effects of arbuscular mycorrhizal fungi on the non-host plant Stellaria media. Plant and Soil 360: 319-331.
• Neal, A.L., Ahmad, S., Gordon-Weeks, R. and Ton, J. (2012). Benzoxazinoids in root exudates of maize attract Pseudomonas putida to the rhizosphere. PLoS ONE 7: e35498 (pdf).
• Pieterse, C.M.J. (2012). Prime time for transgenerational defense. Plant Physiology 158: 545 (pdf).
• Pieterse, C.M.J., Leon-Reyes, A., Van der Does, D., Verhage, A., Koornneef, A., Van Pelt, J.A. and Van Wees, S.C.M. (2012). Networking by small-molecule hormones in plant immunity. In: Induced resistance in plants against insects and diseases, IOBC-WPRS Bulletin 83: 77-80 (pdf).
• Pieterse, C.M.J., Van der Does, D., Zamioudis, C., Leon-Reyes, A. and Van Wees, S.C.M. (2012). Hormonal modulation of plant immunity. Annu. Rev. Cell Dev. Biol. 28: 489-521 (pdf).
• Seidl, M.F., Van den Ackerveken, G., Govers, F. and Snel, B. (2012). Reconstruction of oomycete genome evolution identifies differences in evolutionary trajectories leading to present-day large gene families. Genome Biol. Evol. 4, 199-211 (pdf).
• Seidl, M.F., Wang, R-P., Van den Ackerveken, G., Govers, F., and Snel, B. (2012) Bioinformatic inference of specific and general transcription factor binding sites in the plant pathogen Phytophthora infestans. PLoS ONE 7: e51295 (pdf).
• Smit, E., Bakker, P.A.H.M., Bergmans, H., Bloem, J., Griffiths, B.S., Rutgers, M., Sanvido, O., Singh, B.K., Van Veen H., Wilhelm, R. and Glandorf, D.C.M. (2012). General Surveillance of the soil ecosystem: an approach to monitoring unexpected adverse effects of GMO’s. Ecological Indicators 14: 107-113 (pdf).
• Stassen, J.H.M. (2012). Identification and functional analysis of downy mildew effectors in lettuce and Arabidopsis. pp. 1-187, Ph.D. Thesis Utrecht University (pdf).
• Stassen, J.H.M., Seidl, M.F., Vergeer, P.W.J., Nijman, I.J., Snel, B., Cuppen, E., and Van den Ackerveken, G. (2012). Effector identification in the lettuce downy mildew Bremia lactucae by massively parallel transcriptome sequencing. Mol. Plant Pathol. 13: 719-731 (pdf).
• Terpstra, I. (2012). Genetical genomics - Genetic regulation of environmental responses in Arabidopsis. pp. 1-139, Ph.D. Thesis Utrecht University (pdf).
• Van der Does, D. (2012). Hormonal crosstalk in plant immunity. pp. 1-169, Ph.D. Thesis Utrecht University (pdf).
• Van der Ent, S. and Pieterse, C.M.J. (2012). Ethylene: multitasker in plant-attacker interactions. In: Annual Plant Reviews - The Plant Hormone Ethylene (M.T. McManus, ed). Blackwell Publishing. Annual Plant Reviews 44: 343-377.
• Van der Heijden, M. (2012). Met mycorrhiza meer mans: Duurzaamheid en biodiversiteit door ondergrondse schimmelnetwerken. Oratie Universiteit Utrecht, 12 p (pdf).
• Van Molken, T., De Caluwe, H., Hordijk, C.A., Leon-Reyes, A., Snoeren, T.A.L., Van Dam, N.M. and Stuefer, J.F. (2012). Virus infection decreases the attractiveness of white clover plants for a non-vectoring herbivore. Oecologia 170: 433-444 (pdf).
• Van Wees, S.C.M. (2012).Unravelling intimacies between plants and their enemies. Plant Biology 14: iii-iv (pdf).
• Van Zanten, M., Ritsema, T., Polko, J.K., Leon-Reyes, A., Voesenek, L.A.C.J., Millenaar, F.F., Pieterse, C.M.J. and Peeters, A.J.M. (2012). Modulation of ethylene and heat-controlled hyponastic leaf movement in Arabidopsis thaliana by the plant defense hormones jasmonate and salicylate. Planta 235: 677–685 (pdf).
• Verbruggen, E., Kiers, E.T., Bakelaar, P.N.C., Röling, W.F.M. and Van der Heijden, M.G.A. (2012). Soil communities from organically and conventionally managed fields provide different agro-ecosystem services. Plant Soil 350: 43-55 (pdf).
• Verbruggen, E., Kuramae, E.E., Hillekens, R., De Hollander, M., Kiers, E.T., Roling, W.F.M., Kowalchuk, G.A. and Van der Heijden, M.G.A. (2012). Testing potential effects of maize expressing the Bacillus thuringiensis Cry1Ab endotoxin (Bt Maize) on mycorrhizal fungal communities via DNA- and RNA-based pyrosequencing and molecular fingerprinting. Applied and Environmental Microbiology 78: 7384-7392.
• Weller,  D.M., Mavrodi, D.V., Van Pelt, J.A., Pieterse, C.M.J., Van Loon, L.C. and Bakker, P.A.H.M. (2012). Induced systemic resistance (ISR) in Arabidopsis thaliana against Pseudomonas syringae pv. tomato by 2,4-diacetylphloroglucinol-producing Pseudomonas fluorescens. Phytopathology 102: 403-412 (pdf).
• Zamioudis, C. (2012). Signaling in Arabidopsis roots in response to beneficial rhizobacteria. pp. 1-127, Ph.D. Thesis Utrecht University (pdf).
• Zamioudis, C. and Pieterse, C.M.J. (2012). Modulation of host immunity by beneficial microbes. Mol. Plant-Microbe Interact. 25: 139-150 (pdf).
• Zeilmaker, T. (2012). Functional and applied aspects of the DOWNY MILDEW RESISTANT 1 and 6 genes in Arabidopsis. pp. 1-147, Ph.D. Thesis Utrecht University (pdf).

2011

• Ahmad, S., Veyrat, N., Gordon-Weeks, R., Zhang, Y., Martin, J., Smart, L., Glauser, G., Erb, M., Flors, V., Frey, M. and Ton, J. (2011. Benzoxazinoid metabolites regulate innate immunity against aphids and fungi in maize. Plant Physiol. 157: 317-327 (pdf).
• Ahmad, S., Van Hulten, M., Martin, J., Pieterse, C.M.J., Van Wees, S.C.M. and Ton, J. (2011). Genetic dissection of basal defence responsiveness in accessions of Arabidopsis thaliana. Plant Cell Environm. 34: 1191–1206 (pdf). 
• Bakker, P.A.H.M., Doornbos, R.F. and Van Loon, L.C. (2011). Impact of induced systemic resistance on the bacterial rhizosphere microflora. In: Plant growth promoting rhizobacteria (PGPR) for sustainable agriculture (Reddy, M.S. and Wang, Q., eds.), China Agricultural and Technology Press, Beijing, pp. 6-10.
• Berendsen, R.L. (2011). Dry bubble disease of the white button mushroom: Ecology and control of Lecanicillium fungicola. pp. 1-161, Ph.D. Thesis Utrecht University (pdf).
• Bardoel, B.W., Van der Ent, S., Pel, M.J.C, Tommassen, J., Pieterse, C.M.J., Van Kessel, K.P.M. and Van Strijp, J.A.G. (2011). Pseudomonas evades immune recognition of flagellin in both mammals and plants. PLoS Pathogens 7: e1002206 (pdf).
• Cabral, A., Stassen, J.H.M., Seidl, M. F., Bautor, J., Parker, J.E. and Van den Ackerveken, G. (2011). Identification of Hyaloperonospora arabidopsidis transcript sequences expressed during infection reveals isolate-specific effectors. PLoS ONE 6: e19328 (pdf).
• Doornbos, R.F., Geraats, B.P.J., Kuramae, E.E., Van Loon, L.C. and Bakker, P.A.H.M. (2011). Effects of jasmonic acid, ethylene, and salicylic acid signaling on the rhizosphere bacterial community of Arabidopsis thaliana. Mol. Plant-Microbe Interact. 24: 395-407 (pdf).
• Doornbos, R.F., Van Loon L.C. and Bakker P.A.H.M. (2011). Impact of induced systemic resistance on the bacterial microbiome of Arabidopsis thaliana. In: Multitrophic interactions in soil (Landa, B.B., Navas-Cortes, J.A., Montes-Borego, M. and Steinberg, C., Eds.). IOBC/wprs Bulletin 71: 169-172 (pdf).
• Fabro, G., Steinbrenner, J., Coates, M., Ishaque, N., Baxter, L., Studholme, D., Koerner, E., Allen, R., Piquerez, S., Rougon-Cardoso, A., Greenshields, D., Lei, R., Badel, J.L., Caillaud, M-C., Van den Ackerveken, G., Parker, J.E., Beynon, J. and Jones, J.D.G. (2011). Analysis of the effectorome from the obligate biotroph Hyaloperonospora arabidopsidis reveals redundant roles in suppression of PAMP-Triggered Immune response. PLoS Pathogens 7: e1002348 (pdf).
• Maldonado-Gonzalez M.M., Bakker P.A.H.M. and Mercado-Blanco J. (2011). Involvement of Induced Systemic Resistance in control of Verticillium wilt by fluorescent Pseudomonas spp. In: Multitrophic interactions in soil (Landa, B.B., Navas-Cortes, J.A., Montes-Borego, M. and Steinberg, C., Eds.) IOBC/wprs Bulletin 71: 73-76 (pdf).
• Mendes, R., Kruijt, M., De Bruijn, I., Dekkers, E., Van der Voort, M., Schneider, J.H.M., Piceno, Y.M., DeSantis, T.Z., Andersen, G.L., Bakker, P.A.H.M. and Raaijmakers, J.M. (2011). Deciphering the rhizosphere microbiome for disease-suppressive bacteria. Science 332: 1097-1100 (pdf).
• Mukhtar, M.S., Carvunis, A-R, Dreze, M., Epple, P., Steinbrenner, J., Moore, J., Tasan, M, Galli, M, Hao, T, Nishimura, M.T., Pevzner, S.J., Donovan, S.E., Ghamsari, L., Santhanam, B., Romero, V., Poulin, M.M., Gebreab, F., Gutierrez, B.J., Tam, S., Monachello, D., Boxem, M., Harbort, C.J., McDonald, N., Gai, L., Chen, H., He, Y., European Union Effectoromics Consortium*, Vandenhaute, J., Roth, F.P., Hill, D.E., Ecker, J.R., Vidal, M., Beynon, J., Braun, P., Dangl, J.L. (2011). Independently evolved virulence effectors converge onto hubs in a plant immune system network . Science 333: 596-601. *Cabral, A., and Van den Ackerveken, G. are part of the Effectoromics Consortium (pdf).  
• Proietti, S., Bertini, L., Van der Ent, S., Leon-Reyes, A., Pieterse, C.M.J., Tucci, M., Caporale, C. and Caruso, C. (2011). Cross activity of orthologous WRKY transcription factors in wheat and Arabidopsis. J. Exp. Bot. 62: 1975-1990 (pdf).
• Seidl, M.F., Van den Ackerveken, G., Govers, F. and Snel, B. (2011). A domain-centric analysis of oomycete plant pathogen genomes reveals unique protein organization. Plant Physiol. 155: 628-644 (pdf).
• Stassen, J.H.M. and Van den Ackerveken, G. (2011). How do oomycetes interfere with plant life? Curr. Opinion Plant Biol. 14:407-414 (pdf).
• Swain, S., Roy, S., Shah, J., Van Wees, S.C.M, Pieterse, C.M.J. and Nandi, A.K. (2011). Arabidopsis thaliana cdd1 mutant uncouples constitutive activation of salicylic acid signaling from growth defects. Mol. Plant Pathol. 12: 855-865 (pdf).
• Ten Hove, C., De Jong, M., Lapin, D., Andel, A., Sanchez-Perez, G.F., Tarutani, Y., Suzuki, Y., Heidstra, R. and Van den Ackerveken, G. (2011). Trans-repression of gene activity upstream of T-DNA tagged RLK902 links Arabidopsis root growth inhibition and downy mildew resistance. PLoS ONE 6: e19028 (pdf).
• Veiga R., Jansa, J.J., Frossard, E. and Van der Heijden, M.G.A. (2011). Can arbuscular mycorrhizal fungi suppress agricultural weeds? PLoS ONE 6: e27825 (pdf).  
• Verhage, A. (2011). Rewiring of the jasmonic acid signaling pathway during insect herbivory on Arabidopsis. pp. 1-172, Ph.D. Thesis Utrecht University (pdf).
• Verhage, A., Vlaardingerbroek, I., Raaijmakers, C., Van Dam, N.M., Dicke, M., Van Wees, S.C.M. and Pieterse, C.M.J. (2011). Rewiring of the jasmonate signaling pathway in Arabidopsis during insect herbivory. Frontiers in Plant Science 2: 47 (pdf).
• Wagg, C., Jansa, J., Stadler, M., Schmid, B. and Van der Heijden, M.G.A. (2011). Below ground fungal diversity drives above ground productivity. Ecology Letters 14: 1001-1009 (pdf). 

2010

• Ahmad, S., Gordon-Weeks, R., Pickett, J. and Ton, J. (2010). Natural variation in priming of basal resistance: from evolutionary origin to agricultural exploitation. Mol. Plant Pathol. 11: 817-827 (pdf). 
• Bakker, P.A.H.M., Doornbos, R.F. and Van Loon, L.C. (2010). Induced systemic resistance (ISR) and plant disease control. In: Inducao de Resistencia Novos Conceitos e Aplicacoes (Resende, M.L.V., ed.), Sociedade Brasileira de Fitopatologia, pp. 41-55.
• Baxter, L., Tripathy, S., Ishaque, N., Boot, N., Cabral, A., Kemen, E., Thines, M., Ah-Fong, A., Anderson, R., Badejoko, W., Bittner-Eddy, P., Boore, J.L., Chibucos, M.C., Coates, M., Dehal, P., Delehaunty, K., Dong, S., Downton, P., Dumas, B., Fabro, G., Fronick, C., Fuerstenberg, S.I., Fulton, L., Gaulin, E., Govers, F., Hughes, L., Humphray, S., Jiang, R.H.Y., Judelson, H., Kamoun, S., Kyung, K., Meijer, H., Minx, P., Morris, P., Nelson, J., Phuntumart, V., Qutob, D., Rehmany, A., Rougon-Cardoso, A., Ryden, P., Torto-Alalibo, T., Studholme, D., Wang, Y., Win, J., Wood, J., Clifton, S.W., Rogers, J., Van den Ackerveken, G., Jones, J.D.G., McDowell, J.M., Beynon, J. and Tyler, B.M. (2010). Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome. Science 330: 1549-1551.
• Berendsen, R.L., Baars, J.J.P., Kalkhove, S.I.C., Lugones, L.G., Wösten, H.A.B. and Bakker P.A.H.M. (2010) Pathogen profile: Lecanicillium fungicola, causal agent of dry bubble disease in white-button mushroom. Mol. Plant Pathol. 11: 585-595 (pdf).
• Compant S., Van der Heijden M.G.A. and Sessitsch A. (2010). Climate change effects on beneficial plant-microorganism interactions. FEMS Microbiol. Ecol. 73: 197-214 (pdf).
• Kwak, Y.-S., Bakker, P.A.H.M., Glandorf, D.C.M., Rice, J.T., Paulitz, T.C. and Weller, D.M. (2010). Isolation, characterization and sensitivity to 2,4-diacetylphloroglucinol of isolates of Phialophora spp. from Washington wheat fields. Phytopathology 100: 404-414 (pdf).
• Leon-Reyes, A., Du, Y., Koornneef, A., Proietti, S., Körbes, A.P., Memelink, J., Pieterse, C.M.J. and Ritsema, T. (2010). Ethylene signaling renders the jasmonate response of Arabidopsis insensitive to future suppression by salicylic acid. Mol. Plant-Microbe Interact. 23: 187-197 (pdf).
• Leon-Reyes, A., Van der Does, D., De Lange, E.S., Delker, C., Wasternack, C., Van Wees, S.C.M., Ritsema, T. and Pieterse, C.M.J. (2010). Salicylate-mediated suppression of jasmonate-responsive gene expression in Arabidopsis is targeted downstream of the jasmonate biosynthesis pathway. Planta 232: 1423-1432 (pdf).
• Matilla, M.A., Ramos, J.L., Bakker, P.A.H.M., Doornbos, R.F., Vivanco, J.M., Badri, D.V. and Ramos-González M.I. (2010). Pseudomonas putida KT2440 causes induced systemic resistance and changes in Arabidopsis root exudation. Environmental Microbiology Reports 2: 381-388 (pdf).
• Mukhtar, M.S., Carvunis, A-R, Dreze, M., Epple, P., Steinbrenner, J., Moore, J., Tasan, M, Galli, M, Hao, T, Nishimura, M.T., Pevzner, S.J., Donovan, S.E., Ghamsari, L., Santhanam, B., Romero, V., Poulin, M.M., Gebreab, F., Gutierrez, B.J., Tam, S., Monachello, D., Boxem, M., Harbort, C.J., McDonald, N., Gai, L., Chen, H., He, Y., European Union Effectoromics Consortium*, Vandenhaute, J., Roth, F.P., Hill, D.E., Ecker, J.R., Vidal, M., Beynon, J., Braun, P., Dangl, J.L. (2011). Independently Evolved Virulence Effectors Converge onto Hubs in a Plant Immune System Network . Science 333: 596-601. *Cabral, A., and Van den Ackerveken, G. are part of the Effectoromics Consortium (pdf) 
• Nottingham, A.T., Turner, B.L., Winter, K., Van der Heijden, M.G.A. and Tanner, E.V.J. (2010). Arbuscular mycorrhizal mycelial respiration in moist tropical forest. New Phytologist 186: 957-967 (pdf). 
• Pineda, A., Zheng, S.-J., Van Loon, J.J.A., Pieterse, C.M.J. and Dicke, M. (2010). Helping plants dealing with insects: role of beneficial soil-borne microbes. Trends Plant Sci. 15: 507-514 (pdf).
• Ramírez, V., Van der Ent, S., García-Andrade, J., Coego, A., Pieterse, C.M.J. and Vera, P. (2010). OCP3 is an important modulator of NPR1-mediated jasmonic acid-dependent induced defenses in Arabidopsis. BMC Plant Biol. 10: 199 (pdf).
• Ritsema, T., Van Zanten, M. Leon-Reyes, A., Voesenek, L.A.C.J., Millenaar, F.F., Pieterse, C.M.J. and Peeters, A.J.M. (2010). Kinome profiling reveals an interaction between jasmonate, salicylate and light control of hyponastic petiole growth in Arabidopsis thaliana. PLoS ONE 5: e14255 (pdf).
• Terpstra, I.R., Snoek, L.B., Keurentjes, J.J.B., Peeters, A.J.M. and Van den Ackerveken, G. (2010). Regulatory network identification by genetical genomics: signaling downstream of the Arabidopsis receptor-like kinase ERECTA. Plant Physiol. 154: 1067-1078 (pdf).
• Van Hulten, M., Ton, J., Pieterse, C.M.J. and Van Wees, S.C.M. (2010). Plant defense signaling from the underground primes aboveground defenses to confer enhanced resistance in a cost-efficient manner. In: Plant Communication from an Ecological Perspective; Signaling and Communication in Plants (F. Baluska, V. Ninkovic, eds), Springer-Verlag Berlin Heidelberg, pp. 43-60 (pdf).
• Van Loon, L.C. (2010). Specificity of antifungal pathogenesis-related proteins. Plant Physiol. 154: 1 (pdf).
• Verbruggen, E., Röling, W.F.M., Gamper, H.A., Kowalchuk, G.A., Verhoef, H.A. and Van der Heijden, M.G.A. (2010). Positive effects of organic farming on below-ground mutualists: large-scale comparison of mycorrhizal fungal communities in agricultural soils. New Phytologist 186: 968-979 (pdf).
• Verhage, A., Van Wees, S.C.M. and Pieterse, C.M.J. (2010). Plant immunity: it's the hormones talking, but what do they say? Plant Physiol. 154: 536-540 (pdf).

2009

• Altenbach, D., Rudiño-Pinera, E., Olvera, C., Boller, T., Wiemken, A. and Ritsema, T. (2009). An acceptor-substrate binding site determining glycosyl transfer emerges from mutant analysis of glycoside hydrolases (GH32). Plant Mol. Biol.  69: 47-56 (pdf)
• Bargmann, B.O.R., Laxalt, A.M., Riet, B., Testerink, C., Merquiol, E., Mosblech, A., Leon-Reyes, A., Pieterse, C.M.J., Haring, M.A., Heilmann, I., Bartels, D. and Munnik, T. (2009). Reassessing the role of phospholipase D in the Arabidopsis wounding response. Plant, Cell Environm. 32:837-850 (pdf).
• Berendsen, R.L.  and Bakker, P.A.H.M. (2009). Selection of Pseudomonas strains that are antagonistic to Verticillium fungicola, the causal agent of dry bubble disease in Agaricus bisporus. In: Molecular tools for understanding and improving biocontrol (B. Duffy, M. Maurhofer, C. Keel, C. Gessler, Y. Elad and S. Kiewnick, eds), IOBC/wprs Bulletin 43: 32 (pdf).
• De Jong, M. and Van den Ackerveken, G. (2009). Fungal and oomycete biotrophy. In: Annual Plant Reviews - Molecular Aspects of Plant Disease Resistance (J.E. Parker, ed), Blackwell, pp. 77-101.
• Djavaheri, M., Mercado-Blanco, J., Van Loon, L.C. and Bakker, P.A.H.M. (2009). Analysis of determinants of Pseudomonas fluorescens WCS374r involved in induced systemic resistance in Arabidopsis thaliana. In: Molecular tools for understanding and improving biocontrol (B. Duffy, M. Maurhofer, C. Keel, C. Gessler, Y. Elad and S. Kiewnick, eds), IOBC/wprs Bulletin 43: 109-112 (pdf). 
• Doornbos, R.F. (2009). Analysis of rhizosphere bacterial communities in Arabidopsis: impact of plant defense signaling. pp. 1-152, Ph.D. Thesis Utrecht University, ISBN 978-90-393-5199-4 (pdf).
• Doornbos, R.F., Van Loon, L.C. and Bakker, P.A.H.M. (2009). Beneficial Pseudomonas spp. have altered root colonization on Arabidopsis thaliana mutants affected in the expression of induced systemic resistance. In: Molecular tools for understanding and improving biocontrol (B. Duffy, M. Maurhofer, C. Keel, C. Gessler, Y. Elad and S. Kiewnick, eds), IOBC/wprs Bulletin  43: 307-310 (pdf).
• Huibers, R.P., De Jong, M, Dekter, R.W. and Van den Ackerveken, G. (2009) Disease-specific expression of host genes during downy mildew infection of Arabidopsis. Mol. Plant-Microbe Interact. 9: 1104-1115 (pdf).
• Kwak, Y., Bakker, P.A.H.M., Glandorf, D.C.M., Topham, J., Paulitz, T. and Weller, D.M. (2009). Diversity, virulence and 2,4-diacetylphloroglucinol sensitivity of Gaeumannomyces graminis var. tritici isolates from Washington State. Phytopathology 99: 472-479 (pdf).
• Lemanceau, P., Expert,, D., Gaymard, F., Bakker, P.AH.M. and Briat, J.F. (2009). Role of iron in plant-microbe interactions. In: Plant Innate Immunity (L.C. Van Loon ed), Advances in Botanical Research Vol 51, Elsevier, pp. 491-549 (pdf).
• Leon-Reyes, A. (2009). Making sense out of signaling during plant defense. pp. 1-184, Ph.D. Thesis Utrecht University, ISBN 978-90-39350973 (pdf).
• Leon-Reyes, A., Spoel, S.H., De Lange, E.S., Abe, H., Kobayashi, M., Tsuda, S., Millenaar, F.F., Welschen, R.A.M., Ritsema, T. and Pieterse, C.M.J. (2009). Ethylene modulates the role of NPR1 in cross-talk between salicylate and jasmonate signaling. Plant Physiol. 149: 1797-1809 (pdf).
• Parikh, K., Peppelenbosch, M.P. and Ritsema, T. (2009). Kinome profiling using peptide arrays in eukaryotic cells. In: Phospho-Proteomics: Methods and Protocols (De Graauw M., ed.). Series: Methods in Molecular Biology, vol. 527. Humana Press Inc. Totowa, New York, USA, pp. 269-280 (pdf).
• Peppelenbosch M.P., Diks S.H. and Ritsema T. (2009). The kinome. Acta Clinica Belgica. 64: 75.
• Pieterse, C.M.J., Leon-Reyes, A., Van der Ent, S. and Van Wees, S.C.M. (2009). Networking by small-molecule hormones in plant immunity. Nature Chem. Biol. 5: 308-316 (pdf).
• Ritsema, T. (2009). Fructans; prebiotic molecules for healthy humans. In: Preclinical Research into Crohn’s Disease: A Practical Guide, Eds. Peppelenbosch M.P. and Comalada M. Transworld Research Network, Kerala, India, pp. 117-126.
• Ritsema, T., Brodmann, D., Diks, S.H., Bos, C.L., Nagaraj, V., Pieterse, C.M.J., Boller, T., Wiemken, A. and Peppelenbosch, M.P. (2009). Are small GTPases signal hubs in sugar-mediated induction of fructan biosynthesis? PLoS ONE 4: e6605 (pdf).
• Segarra, G., Van der Ent, S., Trillas, I. and Pieterse, C.M.J. (2009). MYB72, a node of convergence in induced systemic resistance triggered by a fungal and a bacterial beneficial microbe. Plant Biology 11: 90-96 (pdf).
• Ton, J., Van der Ent, S., Van Hulten, M., Pozo, M., Van Oosten, V., Van Loon, L.C., Mauch-Mani, B., Turlings, T.C.J. and Pieterse, C.M.J. (2009). Priming as a mechanism behind induced resistance against pathogens, insects and abiotic stress. In: Induced Resistance in Plants Against Insects and Diseases (A. Schmitt, N. Birch, M. Dicke, B. Mauch-Mani, eds), IOBC/wprs Bulletin 44, pp. 3-13 (pdf).  
• Van Damme, M., Zeilmaker, T., Elberse, J., Andel, A., De Sain-van der Velden, M. and Van den Ackerveken, G. (2009) Downy mildew resistance in Arabidopsis by mutation of HOMOSERINE KINASE. Plant Cell 21: 2179-2189 (pdf).
• Van der Ent, S., Koornneef, A., Ton, J. and Pieterse, C.M.J. (2009). Induced resistance - orchestrating defence mechanisms through cross-talk and priming. In: Annual Plant Reviews - Molecular Aspects of Plant Disease Resistance (J.E. Parker, ed), Blackwell, pp. 334-370 (pdf).
• Van der Ent, S., Van Hulten, M.H.A., Pozo, M.J., Czechowski, T., Udvardi, M.K., Pieterse, C.M.J. and Ton, J. (2009). Priming of plant innate immunity by rhizobacteria and ß-aminobutyric acid: differences and similarities in regulation. New Phytologist 183: 419-431 (pdf).
• Van der Ent, S., Van Wees, S.C.M. and Pieterse, C.M.J. (2009). Jasmonate signaling in plant interactions with resistance-inducing beneficial microbes. Phytochemistry 70: 1581-1588 (pdf). 
• Van Hulten, M.H.A. (2009). Priming Arabidopsis for defense: Molecular and ecological aspects. pp. 1-192, Ph.D. Thesis Utrecht University, ISBN 978-90-393-50287 (pdf).
• Van Hulten, M., Ahmad, S., Luna-Diez, E., Gordon-Weeks, R., Pieterse, C.M.J. and Ton, J. (2009). Natural variation in defence responsiveness amongst Arabidopsis accessions. Commun. Agric. Appl. Biol. Sci. 74: 801-807.
• Viebahn, M., Smit, E., Glandorf, D.C.M., Wernars, K., Bakker, P.A.H.M. (2009).  Effect of genetically modified bacteria on ecosystems and their potential benefits for bioremediation and biocontrol of plant diseases. In: Sustainable Agriculture Reviews 2 (E. Lichtfouse, ed.), Springer, pp. 45-69 (pdf).

2008

• Bakker, P.A.H.M., Van Pelt, J.A., Van der Sluis, I., and Pieterse, C.M.J. (2008). Bacterial elicitors and plant signaling in induced systemic resistance. In: Prospects and Applications for Plant-Associated Microbes. A Laboratory Manual, Part A: Bacteria. (S. Sorvari and A. M. Pirttilä, Eds.). BioBien Innovations, Piikkiö, Finland, pp. 276-282 (pdf).
• De Jong, M. (2008). Susceptibility of Arabidopsis to the downey mildew pathogen Hyaloperonospora parasitica: a reverse genetics approach. pp. 1-181, Ph.D. Thesis Utrecht University, ISBN 978-90-393-4766-9.
• De Vleesschauwer, D., Djavaheri, M., Bakker, P.A.H.M. and Höfte, M.J. (2008).  Pseudomonas fluorescens WCS374r-induced systemic resistance in rice against Magnaporthe oryzae is based on pseudobactin-mediated priming for a salicylic acid-repressible multifaceted defense response. Plant Physiol. 148: 1996-2012 (pdf).
• Huibers, R. (2008). Genetic analysis of susceptibility of Arabidopsis to downy mildew infection. pp. 1-157, Ph.D. Thesis Utrecht University, ISBN 978-90-393-4880-2.
• Koornneef, A. (2008). Cross-talk in plant defense signaling: antagonism between salicylate and jasmonate pathways in Arabidopsis. pp. 1-131, Ph.D. Thesis Utrecht University, ISBN 978-90-393-4783-6 (pdf).
• Koornneef, A. and Pieterse, C.M.J. (2008). Cross-talk in defense signaling. Plant Physiol. 146: 839-844 (pdf).
• Koornneef, A., Leon-Reyes, A. Ritsema, T., Verhage, A., Den Otter, F.C., Van Loon, L.C. and Pieterse, C.M.J. (2008). Kinetics of salicylate-mediated suppression of jasmonate signaling reveal a role for redox modulation. Plant Physiol. 147: 1358-1368 (pdf).
• Koornneef, A., Rindermann, K., Gatz, C. and Pieterse, C.M.J. (2008). Histone modifications do not play a major role in salicylate-mediated suppression of jasmonate-induced PDF1.2 gene expression. Communicative & Integrative Biology 1: 143-145 (pdf).
• Koornneef, A., Verhage, A., Leon-Reyes, A., Snetselaar, R., Van Loon, L.C., and Pieterse, C.M.J. (2008). Towards a reporter system to identify regulators of cross-talk between salicylate and jasmonate signaling pathways in Arabidopsis. Plant Signaling & Behavior 3: 543-546 (pdf).
• Lemanceau, P., Bakker, P., Raaijmakers, J., Bloemberg, G., Höfte, M., Cooke, B.M. (Eds.) (2008). New Perspectives and Approaches in Plant Growth-Promoting Rhizobacteria Research, Springer ISBN 978-1-4020-6775-4.
• Pieterse, C.M.J., Koornneef, A., Léon Reyes, A., Ritsema, T., Verhage, A., Joosten, R., De Vos, M., Van Oosten, V. and Dicke, M. (2008). Cross-talk between signaling pathways leading to defense against pathogens and insects. In: Biology of Molecular Plant-Microbe Interactions, Vol. 6 (M. Lorito, S. Woo and F. Scala, eds), The International Society for Molecular Plant-Microbe Interactions, St. Paul, MN., pp. 1-9 (pdf).
• Pozo, M.J., Van der Ent, S., Van Loon, L.C. and Pieterse, C.M.J. (2008). The transcription factor MYC2 is involved in priming for enhanced defense during rhizobacteria-induced systemic resistance in Arabidopsis. New Phytologist 180: 511-523 (pdf).
• Pré, M., Atallah, M., Champion, A., De Vos, M., Pieterse, C.M.J. and Memelink, J. (2008). The AP2/ERF-domain transcription factor ORA59 integrates jasmonic acid and ethylene signals in plant defense. Plant Physiol. 147: 1347-1357 (pdf).
• Schenk, P.M., McGrath, K.C., Lorito, M. and Pieterse, C.M.J. Pieterse (2008). Plant-microbe and plant-insect interactions meet common grounds. New Phytologist 179: 251-256 (pdf).
• Van Damme, M., Huibers, R., Elberse, J. and Van den Ackerveken, G. (2008). Arabidopsis DMR6 encodes a putative 2OG-Fe(II) oxygenase that is defense-associated but required for susceptibility to downy mildew. Plant J. 54: 785-793 (pdf).
• Van Damme, M., Huibers, R., Zeilmakers, T., Andel, A., Elberse, J. and Van den Ackerveken, A. (2008). Loss of downy mildew susceptibility in Arabidopsis through mutation in genes encoding metabolic enzymes. In: Biology of Molecular Plant-Microbe Interactions, Vol. 6 (M. Lorito, S.L. Woo and F. Scala, eds), The International Society for Molecular Plant-Microbe Interactions, St. Paul, MN., pp. 1-3.
• Van den Mortel, J.E., Schat, H., Moerland, P.D., Van Loren van Themaat, E., Van der Ent, S., Blankestijn, H., Ghandilyan, A., Tsiatsiani, S. and Aarts, M.G.M. (2008). Expression differences for genes involved in lignin, glutathione and sulfate metabolism in response to cadmium in Arabidopsis thaliana and the related Zn/Cd-hyperaccumulator Thlaspi caerulescens. Plant Cell Environm. 31:301-324 (pdf).
• Van der Ent, S. (2008). Transcriptional regulators of rhizobacteria-induced systemic resistance. pp. 1-181, Ph.D. Thesis Utrecht University, ISBN 978-90-393-4725-6 (pdf).
• Van der Ent, S., Verhagen, B.W.M., Van Doorn, R., Bakker, D., Verlaan, M.G., Pel, M.J.C., Joosten, R.G., Proveniers, M.C.G., Van Loon, L.C., Ton, J. and Pieterse, C.M.J. (2008). MYB72 is required in early signaling steps of rhizobacteria-induced systemic resistance in Arabidopsis. Plant Physiol. 146:1293-1304 (pdf).
• Van Loon, L.C. (2008). Manipulating the plant's innate immune system by inducing resistance. Phytoparasitica 36: 103-106 (pdf).
• Van Loon, L.C., Bakker, P.A.H.M., Van der Heijdt, W.H.W., Wendehenne, D., Pugin, A. (2008). Early responses of tobacco suspension cells to rhizobacterial elicitors of induced systemic resistance. Mol. Plant-Microbe Interact. 21: 1609-1621 (pdf).
• Van Oosten, V.R., Bodenhausen, N., Reymond, P., Van Pelt, J.A., Van Loon, L.C., Dicke, M. and Pieterse, C.M.J. (2008). Differential effectiveness of microbially induced resistance against herbivorous insects in Arabidopsis. Mol. Plant-Microbe Interact. 21: 919-930 (pdf).
• Van Pelt, J.A,, Van der Sluis, I., Pieterse, C.M.J., and Bakker P.AH.M. (2008). Induced systemic resistance bioassays in Arabidopsis thaliana. In: Prospects and Applications for Plant-Associated Microbes. A Laboratory Manual, Part A: Bacteria. (S. Sorvari and A. M. Pirttilä, Eds.). BioBien Innovations, Piikkiö, Finland, pp. 113-118 (pdf)
• Van Wees, S.C.M., Van der Ent, S. and Pieterse, C.M.J. (2008). Plant immune responses triggered by beneficial microbes. Curr. Opinion Plant Biol. 11: 443-448 (pdf)
• Verhage, A., De Vos, M., Dicke, M. and Pieterse, C.M.J. (2008). The transcription factor AtMYC2 shapes plant defense responses in Arabidopsis upon Pieris rapae herbivory. In: Biology of Molecular Plant-Microbe Interactions, Vol. 6 (M. Lorito, S. Woo and F. Scala, eds), The International Society for Molecular Plant-Microbe Interactions, St. Paul, MN., pp. 1-6 (pdf).

2007

• Altenbach , D., Ritsema, T. (2007). Structure-function relations and evolution of fructosyltransferases. In: Recent Advances in Fructooligosaccharides Research (Shiomi, N., Benkeblia, N., Onodera, S., eds.), Old City Publishing, Philadelphia, Pennsylvania, USA, pp 135-157 (pdf).
• Bakker, P.A.H.M., Pieterse, C.M.J. and Van Loon, L.C. (2007). Induced systemic resistance by fluorescent Pseudomonas spp. Phytopathology 97, 239-243 (pdf).
• Bakker, P.A.H.M. (2007). Exploiting the diversity of mechanisms in biological control of soil borne diseases, Korea Conference on Innovative Science and Technology 2007; Molecular Host-Parasite Interactions, New Horizon on Interface Biology (Y.B. Chae, ed). KOFST pp. 128-137.
• Bakker,  P.A.H.M., Raaijmakers, J.M., Bloemberg G.V., Höfte M., Lemanceau, P., and Cooke, M. (2007). New perspectives and approaches in plant growth-promoting rhizobacteria research - Foreword. Eur. J. Plant Pathol. 119: 241-242 (pdf).
• De Vos, M., Van Oosten, V.R., Jander, G., Dicke, M., and Pieterse, C.M.J. (2007). Plants under attack: multiple interactions with insects. Plant Signaling & Behavior 2: 527-529 (pdf).
• Diks, S.H., Parikh, K., Van der Sijde, M., Joore, J., Ritsema, T. and Peppelenbosch, M.P. (2007). Evidence for a minimal eukaryotic phosphoproteome? PLoS ONE 2, e777 (pdf).
• Djavaheri, M. (2007). Iron-regulated metabolites of plant growth promoting Pseudomonas fluorescens WCS374: their role in induced systemic resistance, pp. 1-128, Ph.D. Thesis Utrecht University, ISBN 978-90-393-4587-0 (pdf).
• Geraats, B.P.J., Bakker, P.A.H.M., Linthorst, H.J.M., Hoekstra, J. and Van Loon, L.C. (2007). The enhanced disease susceptibility phenotype of ethylene-insensitive tobacco cannot be counteracted by inducing resistance or application of bacterial antagonists. Physiol. Mol. Plant Pathol. 70:77-87 (pdf).
• Glazebrook, J. and Ton, J. (2007). Biotic interactions: recurring themes and expanding scales. Curr. Opinion Plant Biol. 10: 331-334 (pdf).
• Höfte, M. and Bakker, P.A.H.M. (2007). Competition for iron and induced systemic resistance by siderophores of plant growth promoting rhizobacteria. In: Microbial Siderophores (A. Varma and S.B. Chincholkar, eds.), Springer, pp. 121-134 (pdf).
• Keurentjes, J.J., Fu, J., Terpstra, I.R., Garcia, J.M., Van den Ackerveken, G., Snoek, L.B., Peeters, A.J., Vreugdenhil, D., Koornneef, M. and Jansen, R.C. (2007) Regulatory network construction in Arabidopsis by using genome-wide gene expression quantitative trait loci. Proc. Natl. Acad.Sci. USA 104, 1708-1713 (pdf).
• Mercado-Blanco, J. and Bakker, P.A.H.M. (2007). Interactions between plants and beneficial Pseudomonas spp.: exploiting bacterial traits for crop protection. Antonie van Leeuwenhoek 92: 367-389 (pdf).
• Pieterse, C.M.J. and Dicke, M. (2007). Plant interactions with microbes and insects: from molecular mechanism to ecology. Trends Plant Sci. 12: 564-569 (pdf).
• Pieterse, C.M.J. and Van Loon, L.C. (2007). Signalling cascades in induced resistance. In: Induced Resistance for Plant Defence: A Sustainable Approach to Crop Protection (D. Walters, A. Newton and G. Lyon, eds), Blackwell, Oxford, UK, pp. 65-88 (pdf).
• Pieterse, C.M.J., Van der Ent, S., Van Pelt, J.A. and Van Loon, L.C. (2007). The role of ethylene in rhizobacteria-induced systemic resistance (ISR). In: Advances in Plant Ethylene Research: Proceedings of the 7th International Symposium on the Plant Hormone Ethylene (Ramira, A., Chang, C., Giovannoni, J., Klee, H., Perata, P., and Woltering, E., eds), Springer, Dordrecht, the Netherlands, pp. 325-331 (pdf).
• Ritsema, T., Joore, J., Van Workum, W. and Pieterse, C.M.J. (2007). Kinome profiling of Arabidopsis using arrays of kinase consensus substrates. Plant Methods 3: 3 (pdf)
• Ton, J., D'Alessandro, M., Jourdie, V., Jakab, G., Karlen, D., Held, M., Mauch-Mani, B. and Turlings, T.C.J. (2007). Priming by air-borne signals boosts direct and indirect resistance in maize. Plant J. 49, 16-26 (pdf).
• Van Damme, M. (2007) Genetic analysis of disease susceptibility in the Arabidopsis-Hyaloperonospora parasitica interaction, pp. 1-125, Ph.D. Thesis Utrecht University, ISBN 978-90-393-4515-3 .
• Van Loon, L.C. (2007). Plant responses to plant growth-promoting rhizobacteria. Eur. J. Plant Pathol. 119: 243-254 (pdf).
• Van Oosten, V.R. (2007). Induced pathogen and insect resistance in Arabidopsis: transcriptomics and specificity of defense, pp. 1-160, Ph.D. Thesis Wageningen University, ISBN 978-90-8504-627-1 (pdf) 
• Van Oosten, V. (2007). Geïnduceerde resistentie tegen pathogenen en insecten in Arabidopsis: transcriptomics en specificiteit van de afweer. Gewasbescherming 38: 293-295.  

2006

• Conrath, U., Beckers, G.J.M., Flors, V., Garcia-Agustin, P., Jakab, G., Mauch, F., Newman, M.-A., Pieterse, C.M.J., Poinssot, B., Pozo, M.J., Pugin, A., Schaffrath, U., Ton, J., Wendehenne, D., Zimmerli, L. and Mauch-Mani, B. (2006). Priming: getting ready for battle. Mol. Plant-Microbe Interact. 19: 1062-1071 (pdf).
• De Jong, M., Van Breukelen, B., Wittink, F.R., Menke, F.L.H., Weisbeek, P.J., Van den Ackerveken, G. (2006). Membrane-associated transcripts in Arabidopsis; their isolation and characterization by DNA microarray analysis and bioinformatics, Plant J. 46, 708-721 (pdf)
• De Vos, M. (2006). Signal signature, transcriptomics and effectiveness of induced pathogen and insect resistance in Arabidopsis, pp. 1-145, Ph.D. Thesis Utrecht University, ISBN 90-393-4136-2 (pdf).
• De Vos, M. (2006). Signalen, transcriptomics en effectiviteit van geïnduceerde afweer tegen pathogenen en insecten in Arabidopsis. Gewasbescherming 37: 48-51.
• De Vos, M., Denekamp, M., Dicke, M., Vuylsteke, M., Van Loon, L.C., Smeekens, S.C.M. and Pieterse, C.M.J. (2006). The Arabidopsis thaliana transcription factor AtMYB102 functions in defense against the insect herbivore Pieris rapae. Plant Signaling & Behavior 1: 305-311 (pdf).
• De Vos, M., Van Zaanen, W., Koornneef, A., Korzelius, J.P., Dicke, M., Van Loon, L.C. and Pieterse, C.M.J. (2006). Herbivore-induced resistance against microbial pathogens in Arabidopsis. Plant Physiol. 142: 352-363 (pdf).
• Djavaheri, M., Mercado-Blanco, J., Van Loon,L.C. and Bakker, P.A.H.M. (2006). Role of iron-regulated metabolites in Arabidopsis root colonization by Pseudomonas fluorescens WCS374. In: Multitrophic Interactions in Soil and Integrated Control (J.M. Raaijmakers and R.A. Sikora, eds), IOBC/wprs Bulletin 29(2): 17-20 (pdf).
• Pieterse, C.M.J., Schaller, A., Mauch-Mani, B. and Conrath, U. (2006). Signaling in plant resistance responses: divergence and cross-talk of defense pathways. In: Multigenic and Induced Systemic Resistance in Plants (S. Tuzun and E. Bent, eds), Springer Science+Business Media, New York, pp. 166-198 (pdf).
• Pieterse, C.M.J., Van Pelt, J.A., Verhagen, B.W.M., De Vos, M., Van Oosten, V.R., Van der Ent, S., Koornneef, A., Van Hulten, M.H.A., Pozo, M.J., Ton, J., Dicke, M. and Van Loon, L.C. (2006). Molecular mechanisms involved in induced resistance signaling in Arabidopsis. In: Biology of Molecular Plant-Microbe Interactions, Vol. 5 (F. Sanchez, C. Quinto, I.M. Lopez-Lara and O. Geiger, eds), The International Society for Molecular Plant-Microbe Interactions, St. Paul, MN., pp. 188-194 (pdf).
• Spoel, S.H., Mou, Z., Zhang, X., Pieterse, C.M.J. and Dong, X. (2006). Regulatory roles of NPR1 in plant defense: regulation and function. In: Biology of Molecular Plant-Microbe Interactions, Vol. 5 (F. Sanchez, C. Quinto, I.M. Lopez-Lara and O. Geiger, eds), The International Society for Molecular Plant-Microbe Interactions, St. Paul, MN., pp. 182-187 (pdf).
• Ton, J., Pieterse, C.M.J. and Van Loon, L.C. (2006). The relationship between basal and induced resistance in Arabidopsis. In: Multigenic and Induced Systemic Resistance in Plants (S. Tuzun and E. Bent, eds), Springer Science+Business Media, New York, pp. 197-224 (pdf).
• Turlings, T.C.J. and Ton, J. (2006). Exploiting scents of distress: the prospect of manipulating herbivore-induced plant odours to enhance the control of agricultural pests. Curr. Opinion Plant Biol. 9: 421-427 (pdf).
• Van der Ent, S., Pozo, M.J., Verhagen, B.W.M., Bakker, D., Van Loon, L.C. and Pieterse, C.M.J. (2006). Transcription factors in roots and shoots of Arabidopsis involved in rhizobacteria-induced systemic resistance. In: Multitrophic Interactions in Soil and Integrated Control (J.M. Raaijmakers and R.A. Sikora, eds), IOBC/wprs Bulletin 29(2): 157-161 (pdf).
• Van Hulten, M., Pelser, M., Van Loon, L.C., Pieterse, C.M.J. and Ton, J. (2006). Costs and benefits of priming for defense in Arabidopsis. Proc. Natl. Acad. Sci. USA 103: 5602-5607 (pdf).
• Van Loon, L.C. (2006). Dokteren aan planten. Afscheidscollege UU, 8 september 2006, pp. 1-27.
• Van Loon, L.C. (2006). Effects of beneficial microorganisms on plants. In: Multitrophic Interactions in Soil and Integrated Control (J.M. Raaijmakers and R.A. Sikora, eds), IOBC/wprs Bulletin 29(2): 183-192.
• Van Loon, L.C. and Bakker, P.A.H.M. 2006. Root-associated bacteria inducing systemic resistance. In: Gnanamanickqam, S.S. (ed.), Plant-associated bacteria. Springer, Dordrecht, pp. 269-316 (pdf).
• Van Loon, L.C., Geraats, B.P.J. and Linthorst, H.J.M. (2006). Ethylene as a modulator of disease resistance in plants. Trends Plant Sci. 11: 184-191 (pdf).
• Van Loon, L.C., Rep, M. and Pieterse, C.M.J. (2006). Significance of inducible defense-related proteins in infected plants. Annu. Rev. Phytopathol. 44: 135-162 (pdf).
• Verhagen, B.W.M., Van Loon, L.C. and Pieterse, C.M.J. (2006). Induced disease resistance signaling in plants. In: Floriculture, Ornamental and Plant Biotechnology, Vol III (J.A. Teixeira da Silva, ed), Global Science Books, pp. 334-343 (pdf).
• Viebahn, M., Wernars, K., Smit, E., van Loon, L.C., DeSantis, T.Z., Gary L. Andersen, G.L. and Bakker, P.A.H.M. (2006). Microbial diversity in wheat rhizosphere as affected by genetically modified Pseudomonas putida WCS358r. In: Multitrophic Interactions in Soil and Integrated Control (J.M. Raaijmakers and R.A. Sikora, eds), IOBC/wprs Bulletin 29(2): 167-172 (pdf).

2005

• De Vos, M., Van Oosten, V.R., Van Poecke, R.M.P., Van Pelt, J.A., Pozo, M.J., Mueller, M.J., Buchala, A.J., Métraux, J.-P., Van Loon, L.C., Dicke, M. and Pieterse, C.M.J. (2005). Signal signature and transcriptome changes of Arabidopsis during pathogen and insect attack. Mol. Plant-Microbe Interact. 18: 923-937 (pdf).
• Flors, V., Ton, J., Jakab, G. and Mauch-Mani, B. (2005). Abscisic acid and callose: Team players in defence against pathogens? J. Phytopathol. 153: 377-385 (pdf).
• Léon-Kloosterziel, K.M., Verhagen, B.W.M., Keurentjes, J.J.B., Van Pelt, J.A., Rep, M., Van Loon, L.C. and Pieterse, C.M.J. (2005). Colonization of the Arabidopsis rhizosphere by fluorescent Pseudomonas spp. activates a root-specific, ethylene-responsive PR-5 gene in the vascular bundle. Plant Mol. Biol. 57: 731-748 (pdf)
• Meziane, H., Van der Sluis, I., Van Loon, L.C., Höfte, M. and Bakker, P.A.H.M. (2005). Determinants of Pseudomonas putida WCS358 involved in inducing systemic resistance in plants. Mol. Plant Pathol. 6: 177-185 (pdf)
• Pieterse, C.M.J. (2005). Netwerken met signalen - Het immuunsysteem van planten. Oratie Universiteit Utrecht, 35 p (pdf).
• Pieterse, C.M.J., Van Pelt, J.A., Van Wees, S.C.M., Ton, J., Verhagen, B.W.M., Léon-Kloosterziel, K., Hase, S., De Vos, M., Van Oosten, V., Pozo, M., Spoel, S., Van der Ent, S., Koornneef, A., Chalfun-Junior, A., Resende, M.L.V. and Van Loon, L.C. (2005). Indução de resistência sistêmica por rizobactérias e comunicação na rota de sinalização para uma defesa refinada. Revisão de Patologia de Plantas 13: 277-319 (pdf).
• Ran, L.X., Li, Z.N., Wu, G.J., Van Loon, L.C. and Bakker, P.A.H.M. (2005). Induction of systemic resistance against bacterial wilt in Eucalyptus urophylla by fluorescent Pseudomonas spp. Eur. J. Plant Pathol. 113: 59-70 (pdf).
• Ran, L.X., Liu, C.Y., Wu, G.J., Van Loon, L.C. and Bakker, P.A.H.M. (2005). Suppression of bacterial wilt in Eucalyptus urophylla by fluorescent Pseudomonas spp. in China. Biol. Control 32: 111-120 (pdf)
• Ran, L.X., Van Loon, L.C. and Bakker, P.A.H.M. (2005). No role for bacterially produced salicylic acid in rhizobacterial induction of systemic resistance in Arabidopsis. Phytopathology 95: 1349-1355 (pdf).
• Ran, L.X., Xiang, M.L., Zhou B. and Bakker P.A.H.M. (2005). Siderophores are the main determinants of fluorescent Pseudomonas strains in suppression of grey mould in Eucalyptus urophylla. Acta Phytopathologica Sinica 35: 6-12 (pdf).
• Ton, J., Jakab, G., Toquin, V., Flors, V., Iavicoli, A., Maeder, M.N., Métraux, J.-P. and Mauch-Mani, B. (2005). Dissecting the b-aminobutyric acid-induced priming phenomenon in Arabidopsis. Plant Cell 17: 987-999 (pdf).
• Van Damme, M., Andel, A., Huibers, R.P., Panstruga, R., Weisbeek, P. J., Van den Ackerveken, G. (2005). Identification of Arabidopsis loci required for susceptibility to the downy mildew pathogen Hyaloperonospora parasitica, Mol. Plant-Microbe Interact. 19, 583-592 (pdf).
• Van Loon, L.C. and Bakker, P.A.H.M. (2005). Induced systemic resistance as a mechanism of disease suppression by rhizobacteria. In: PGPR: Biocontrol and Biofertilization. Z.A. Siddiqui (ed.), Springer, Dordrecht, pp. 39-66 (pdf).
• Viebahn, M. (2005). Field release of genetically modified Pseudomonas putida WCS358r: Molecular analysis of effects on microbial communities in the rhizosphere of wheat, pp. 1-159, Ph.D. Thesis Utrecht University, ISBN 90-393-0217-0 (pdf).
• Viebahn, M., Doornbos, R., Wernars, K., Van Loon, L.C., Smit, E. and Bakker, P.A.H.M. (2005). Ascomycete communities in the rhizosphere of field-grown wheat are not affected by introductions of genetically modified Pseudomonas putida WCS358r. Environ. Microbiol. 7: 1775-1785 (pdf).
• Viebahn, M., Veenman, C., Wernars, K., Smit, E., Van Loon, L.C. and Bakker, P.A.H.M. (2005). Assessment of differences in ascomycete communities in the rhizosphere of field-grown wheat and potato. FEMS Microbiol. Ecol. 53: 245-253 (pdf).

2004

• De Vos, M., Van Oosten, V.R., Van Pelt, J.A., Van Loon, L.C., Dicke, M. and Pieterse, C.M.J. (2004). Herbivore-induced resistance: differential effectiveness against a set of microbial pathogens in Arabidopsis thaliana. In: Biology of Plant-Microbe Interactions, Vol. 4 (I. Tikhonovich, B. Lugtenberg and N. Provorov, eds.), The International Society for Molecular Plant-Microbe Interactions, St. Paul, MN, pp. 40-43 (pdf).
• Menke, F.L.H., Van Pelt, J.A., Pieterse, C.M.J., and Klessig, D.F. (2004). Silencing of Arabidopsis MAP kinase 6 compromises disease resistance. Plant Cell 16: 897-907 (pdf).
• Pieterse, C.M.J., Bakker, P.A.H.M., Verhagen, B.W.M. and Van Loon, L.C. 2004. Signaling during rhizobacteria-induced systemic resistance in Arabidopsis. In: Biology of Plant-Microbe Interactions, Vol. 4 (I. Tikhonovich, B. Lugtenberg and N. Provorov, eds.), The International Society for Molecular Plant-Microbe Interactions, St. Paul, MN, pp. 192-195 (pdf).
• Pieterse, C.M.J. and Van Loon, L.C. 2004. NPR1: the spider in the web of induced resistance signaling pathways. Curr. Opinion Plant Biol. 7: 456-464 (pdf).
• Pozo, M.J., Van Loon, L.C. and Pieterse, C.M.J. (2004). Jasmonates - signals in plant-microbe interactions. J. Plant Growth Regul. 23: 211-222 (pdf).
• Pozo, M.J., Van Loon, L.C. and Pieterse, C.M.J. (2004). Boosting plant defence by beneficial soil microorganisms. In: Proceedings of the 16th Workshop of Marie Curie Fellows: Research Training in Progress, Petten (Netherlands), 21-22 October, 2003, pp. 158-161 (pdf).
• Van Loon, L.C. and Bakker, P.A.H.M. (2004). Signalling in rhizobacteria-plant interactions. In: Ecological Studies, vol. 168, Root Ecology (J. De Kroon and E.J.W. Visser, eds.), Springer Verlag, Berlin, pp. 287-330 (pdf).
• Van Loon, L.C. and Glick, B.R. (2004). Increased plant fitness by rhizobacteria. In: Ecological Studies, vol. 170, Molecular Ecotoxicology of Plants (H. Sandermann, ed.), Springer Verlag, Berlin, pp. 177-205.
• Van Oosten, V.R., De Vos, M., Van Pelt, J.A., Van Loon, L.C., Van Poecke, R.M.P., Dicke, M. and Pieterse, C.M.J. (2004). Signal signature of Arabidopsis induced upon pathogen and insect attack. In: Biology of Plant-Microbe Interactions, Vol. 4 (I. Tikhonovich, B. Lugtenberg and N. Provorov, eds.), The International Society for Molecular Plant-Microbe Interactions, St. Paul, MN, pp. 199-202 (pdf).
• Verhagen, B.W.M. (2004). Transcriptomics and knockout mutant analysis of rhizobacteria-mediated induced systemic resistance in Arabidopsis, pp. 1-185, Ph.D. Thesis Utrecht University, ISBN 90-393-3711-X (pdf).
• Verhagen, B.W.M., Glazebrook, J., Zhu, T., Chang, H.-S., Van Loon, L.C. and Pieterse, C.M.J. (2004). The transcriptome of rhizobacteria-induced systemic resistance in Arabidopsis. Mol. Plant-Microbe Interact. 17: 895-908 (pdf).

2003

• Bakker, P.A.H.M., De Boer, M., De Bruijn, I., Zhang, K., Van der Sluis, I., and Van Loon, L.C. (2003). Dose response relationships for control of fusarium wilts by Pseudomonas fluorescens RS111. In: 6th International Workshop on Plant Growth Promoting Rhizobacteria (M.S. Reddy, M. Anandaraj, S.J. Eapen, Y.R. Sarma, J.W. Kloepper, eds.), pp. 462-465. Indian Institute of Spices Research, Calicut, India.
• Bakker, P.A.H.M., Ran, L.X., Pieterse, C.M.J. and Van Loon, L.C. (2003). Understanding the involvement of rhizobacteria-mediated induction of systemic resistance in biocontrol of plant diseases. Can. J. Plant Pathol. 25: 5-9 (pdf).
• Brouwer, M., Lievens, B. Van Hemelrijck, W., Van den Ackerveken, G., Cammue, B.P. & Thomma, B.P. (2003). Quantification of disease progression of several microbial pahogens on Arabidopsis thaliana using real-time fluorescence PCR. FEMS Microbiol. Letters 228,  241-248.
• De Boer, M., Bom, P., Kindt, F., Keurentjes, J.J.B., Van der Sluis, I., Van Loon, L.C. and Bakker, P.A.H.M. (2003) Control of Fusarium wilt of radish by combining Pseudomonas putida strains that have different disease-suppressive mechanisms. Phytopathology 93: 626-632 (pdf).
• Geraats, B.P.J. (2003). The role of ethylene perception in plant disease resistance, pp. 1-127, Ph.D. Thesis Utrecht University (pdf).
• Geraats, B.P.J., Bakker, P.A.H.M., Lawrence, C.B., Achuo, E.A., Höfte, M. and Van Loon, L.C. (2003). Ethylene-insensitive tobacco shows differential altered susceptibility to different pathogens. Phytopathology 93: 813-821 (pdf).
• Hase, S., Van Pelt, J.A., Van Loon, L.C. and Pieterse, C.M.J. (2003). Colonization of Arabidopsis roots by Pseudomonas fluorescens primes the plant to produce higher levels of ethylene upon pathogen infection. Physiol. Mol. Plant Pathol. 62: 219-226 (pdf).
• Penninckx, I., Eggermont, K. , Schenk, P., Van den Ackerveken, G., Cammue, B.P., & Thomma, B.P. (2003). The Arabidopsis mutant iop1 exhibits induced over-expression of the plant defensin gene PDF1.2 and enhanced pathogen resistance. Mol. Plant Pathol. 4,  479-486.
• Pieterse, C.M.J., Van Pelt, J.A., Verhagen, B.W.M., Ton, J., Van Wees, S.C.M., Léon-Kloosterziel, K.M. and Van Loon, L.C. (2003). Induced systemic resistance by plant growth-promoting rhizobacteria. Symbiosis 35: 39-54 (pdf).
• Ran, L.X., Xiang, M.L., Van Loon, L.C., and Bakker, P.A.H.M. (2003). Siderophore-mediated suppression of gray mould in Eucalyptus urophylla by fluorescent Pseudomonas spp. In: 6th International Workshop on Plant Growth Promoting Rhizobacteria (M.S. Reddy, M. Anandaraj, S.J. Eapen, Y.R. Sarma, J.W. Kloepper, eds.), pp. 558-563. Indian Institute of Spices Research, Calicut, India.
• Schuurmans, J.A.M.J., Van Dongen, J.T., Rutjens, B.P.W., Boonman, A., Pieterse, C.M.J. and Borstlap, A.C. (2003). Members of the aquaporin family in the developing pea seed coat include representatives of the PIP, TIP and NIP subfamilies. Plant Mol. Biol. 53: 655-667 (pdf).
• Spoel, S.H., Koornneef, A., Claessens, S.M.C., Korzelius, J.P., Van Pelt, J.A., Mueller, M.J., Buchala, A.J., Métraux, J.-P., Brown, R., Kazan, K., Van Loon, L.C., Dong, X. and Pieterse, C.M.J. (2003). NPR1 modulates cross talk between salicylic acid- and jasmonate-dependent defense pathways through a novel function in the cytosol. Plant Cell 15: 760-770 (pdf).
• Viebahn, M., Glandorf, D.C.M., Ouwens, T.W.M., Smit, E., Leeflang, P., Wernars, K., Thomashow, L.S., Van Loon, L.C. and Bakker, P.A.H.M. (2003). Repeated introduction of genetically modified Pseudomonas putida WCS358r without intensified effects on the indigenous microflora of field-grown wheat. Appl. Environ. Microbiol. 69: 3110-3118 (pdf).
• Visker, M.H.P.W., Keizer, L.C.P., Budding, D.J., Van Loon, L.C., Colon, L.T. and Struik, P.C. (2003). Leaf position prevails over plant age and leaf age in reflecting resistance to late blight in potato. Phytopathology 93: 666-674 (pdf).

2002

• Bakker, P.A.H.M., Glandorf, D.C.M., Viebahn, M., Ouwens, T.W.M., Smit, E., Leeflang, P., Wernars, K., Thomashow, L.S., Thomas-Oates, J.E. and Van Loon, L.C. (2002). Effects of Pseudomonas putida modified to produce phenazine-1-carboxylic acid and 2,4-diacetylphloroglucinol on the microflora of field grown wheat. Antonie van Leeuwenhoek J. Microbiol. 81: 617-624 (pdf).
• Bakker, P.A.H.M., De Boer, M., Zhang, K., Van der Sluis, I. and Van Loon, L.C. (2002). Dose response relationships for control of fusarium wilts by Pseudomonas fluorescens RS111. In: Influence of A-Biotic Factors on Biocontrol Agents (Y. Elad, J. Köhl and D. Shtienberg, eds), IOBC/wprs Bulletin 25(10): 107-110.
• Bakker, P.A.H.M., Mercado-Blanco, J., Ran, L., Van der Sluis, I. and Van Loon, L.C. (2002). Production of salicylic acid and pseudomonine of disease by Pseudomonas fluorescens WCS374. In: Influence of A-Biotic Factors on Biocontrol Agents (Y. Elad, J. Köhl and D. Shtienberg, eds), IOBC/wprs Bulletin 25(10): 265-268.
• Conrath, U., Pieterse, C.M.J. and Mauch-Mani, B. (2002). Priming in plant-pathogen interactions. Trends Plant Sci. 7: 210-216 (pdf).
• Geraats, B.P.J., Bakker, P.A.H.M. and Van Loon, L.C. (2002). Ethylene insensitivity impairs resistance to soilborne pathogens in tobacco and Arabidopsis thaliana. Mol. Plant-Microbe Interact. 15:1078-1085 (pdf).
• Geraats, B.P.J., Bakker, P.A.H.M. and Van Loon, L.C. (2002). Ethylene insensitivity affects resistance to soil-borne pathogens in tobacco and Arabidopsis thaliana. In: Induced Resistance in Plants Against Insects and Diseases (A. Schmitt and B. Mauch-Mani, eds), IOBC/wprs Bulletin 25(6): 53-56.
• Leeflang, P., Smit, E., Glandorf, D.C.M., Van Hannen, E.J. and Wernars, K. (2002). Effects of Pseudomonas putida WCS358r and its genetically modified phenazine producing derivative on the Fusarium population in a field experiment, as determined by 18S rDNA analysis. Soil Biol. Biochem. 34: 1021-1025 (pdf).
• Léon-Kloosterziel, K.M., Verhagen, B.W.M., Keurentjes, J.J.B., Van Loon, L.C. and Pieterse, C.M.J. (2002). Identification of genes involved in rhizobacteria-mediated induced systemic resistance in Arabidopsis. In: Induced Resistance in Plants Against Insects and Diseases (A. Schmitt and B. Mauch-Mani, eds), IOBC/wprs Bulletin 25(6): 71-74 (pdf).
• Marois, E., Van den Ackerveken, G.  and Bonas, U. (2002). The Xanthomonas type III effector protein AvrBs3 modulates plant gene expression and inudces cell hypertrophy in the susceptible host. Mol. Plant-Microbe Interact. 15:  637-646.
• Pieterse, C.M.J., Spoel, S., Ton, J., Van Wees, S.C.M., Van Pelt, J.A. and Van Loon, L.C. (2002). Cross-talk between salicylate- and jasmonate-dependent induced defenses in Arabidopsis. In: Biology of Plant-Microbe Interactions, Volume 3 (S.A. Leong, C. Allen and E.W. Triplett, eds), The International Society for Molecular Plant-Microbe Interactions, St. Paul, MN, pp. 107-112 (pdf).
• Pieterse, C.M.J., Ton, J., Van Wees, S.C.M., Hase, S., Léon-Kloosterziel, K.M., Verhagen, B.W.M., Van Pelt, J.A. and Van Loon, L.C. (2002). Rhizobacteria-mediated induced systemic resistance in Arabidopsis. In: Induced Resistance in Plants Against Insects and Diseases (A. Schmitt and B. Mauch-Mani, eds), IOBC/wprs Bulletin 25(6): 9-16 (pdf).
• Pieterse, C.M.J., Van Wees, S.C.M., Ton, J., Van Pelt, J.A. and Van Loon, L.C. (2002). Signalling in rhizobacteria-induced systemic resistance in Arabidopsis thaliana. Plant Biol. 4: 535-544 (pdf).
• Ran, L.X. (2002). Suppression of bacterial wilt in Eucoalyptus and bacterial speck in Arabidopsis by fluorescent Pseudomonas spp. strains: conditions and mechanisms, pp. 1-141. Ph.D. Thesis Utrecht University, ISBN 90-393-3118-9 (pdf).
• Smit, E., Viebahn, M., Glandorf, D.C.M., Ouwens, T.W.M., Leeflang, P., Wernars, K., Thomashow, L.S., Thomas-Oates, J.E., Van Loon, L.C. and Bakker, P.A.H.M. (2002). Monitoring the fate and ecosystem effects of genetically modified Pseudomonas putida producing phloroglucinol and phenazine in wheat rhizosphere. In: Proceedings of the 7th International Symposium on the Biosafety of Genetically Modified Organisms, International Society of Biosafety Research, Peking University, China, pp. 251-255 (pdf).
• Ton, J., De Vos, M., Robben, C., Buchala, A.J., Métraux, J.-P., Van Loon, L.C. and Pieterse, C.M.J. (2002). Characterisation of Arabidopsis enhanced disease susceptibility mutants that are affected in systemically induced resistance. Plant J. 29: 11-21 (pdf).
• Ton, J., De Vos, M., Robben, C., Van Pelt, J.A., Van Loon, L.C. and Pieterse, C.M.J. (2002). Induced resistance: an enhancement of basal resistance? In: Induced Resistance in Plants Against Insects and Diseases (A. Schmitt and B. Mauch-Mani, eds), IOBC/wprs Bulletin 25(6): 133-138 (pdf).
• Ton, J., Van Pelt, J.A., Van Loon, L.C. and Pieterse, C.M.J. (2002). Differential effectiveness of salicylate-dependent and jasmonate/ethylene-dependent induced resistance in Arabidopsis. Mol. Plant-Microbe Interact. 15: 27-34 (pdf).
• Ton, J., Van Pelt, J.A., Van Loon, L.C. and Pieterse, C.M.J. (2002). The Arabidopsis ISR1 locus is required for rhizobacteria-mediated induced systemic resistance against different pathogens. Plant Biol. 4: 224-227 (pdf).
• Van Loon, L.C. and Pieterse, C.M.J. (2002). Biocontrol agents in signaling resistance. In: Biological Control of Crop Diseases (Gnanamanickam, ed), Marcel Dekker, New York, NY, pp. 355-386 (pdf).
• Van Loon, L.C., Bakker, P.A.H.M. and Pieterse, C.M.J. (2002). Prospects and challenges for practical application of rhizobacteria-mediated induced systemic resistance. In: Induced Resistance in Plants Against Insects and Diseases (A. Schmitt and B. Mauch-Mani, eds), IOBC/wprs Bulletin 25(6): 75-82 (pdf).

2001

• Ballvora, A., Pierre, M., Van den Ackerveken, G., Schornack, S., Rossier, O., Ganal, M., Lahaye, T., and Bonas, U. (2001). Genetic mapping and functional analysis of the tomato Bs4 locus governing recognition of the Xanthomonas campestris pv. vesicatoria AvrBs3-2 protein. Mol. Plant-Microbe Interact. 14, 629-638.
• Escolar, L., Van den Ackerveken, G., Pieplow, S., Rossier, O. and Bonas, U. (2001). Type III secretion of the Xanthomonas avirulence proteins AvrBs1 and AvrBsT. Mol. Plant Pathol. 2, 287-296.
• Folders, J., Algra, J., Roelofs, M.S., Van Loon, L.C., Tomassen, J. and Bitter, W. (2001). Characterization of Pseudomonas aeruginosa chitinase, a gradually secreted protein. J. Bacteriol. 183: 7044-7052 (pdf).
• Geraats, B.P.J., Bakker, P.A.H.M. and Van Loon, L.C. (2001). Can enhanced susceptibility to pathogens of ethylene-insensitive plants be overcome by biocontrol agents that induce systemic resistance? In: Biocontrol Agents: Mode of Action and Interaction with Other Means of Control (Y. Elad, S. Freeman and E. Monte, eds.), IOBC/wprs Bulletin 24: 283-286 (pdf).
• Glandorf, D.C.M., Verheggen, P., Jansen, T., Jorritsma, J.-W., Smit, E., Leeflang, P., Wernars, K., Thomashow, L.S., Laureijs, E., Thomas-Oates, J.E., Bakker, P.A.H.M. and Van Loon, L.C. (2001). Effect of genetically modified Pseudomonas putida WCS358r on the fungal rhizosphere microflora of field-grown wheat. Appl. Environ. Microbiol. 67: 3371-3378 (pdf).
• Hammerschmidt, R., Métraux, J.-P. and Van Loon, L.C. (2001). Inducing resistance: a summary of papers presented at the First International Symposium on Induced Resistance to Plant Diseases, Corfu, May 2000. Eur. J. Plant Pathol. 107: 1-6 (pdf).
• Hase, S., Pieterse, C.M.J. and Van Loon, L.C. (2001). Mechanisms of rhizobacteria-mediated induced systemic resistance. In: Recognition and Signal Transduction in Plant-Microbe Interactions (T. Teraoka, ed), PSJ Plant-Microbe Interactions Symposium Report 37, pp. 15-24. Yamanashi, Japan (pdf).
• Knoester, M, Linthorst, H.J.M., Bol, J.F. and Van Loon, L.C. (2001). Involvement of ethylene in lesion development and systemic acquired resistance in tobacco during the hypersensitive reaction to tobacco mosaic virus. Physiol. Mol. Plant Pathol. 59: 45-57 (pdf).
• Mercado-Blanco, J., Van der Drift, K.M.G.M., Olsson, P.E., Thomas-Oates, J.E., Van Loon, L.C. and Bakker, P.A.H.M. (2001). Analysis of the pmsCEAB gene cluster involved in biosynthesis of salicylic acid and the siderophore pseudomonine in the biocontrol strain Pseudomonas fluorescens WCS374. J. Bacteriol. 183: 1909-1920 (pdf).
• Pieterse, C.M.J., Ton, J. and Van Loon, L.C. (2001). Cross-talk between plant defence signalling pathways: boost or burden? AgBiotechNet 3: ABN 068 (pdf).
• Pieterse, C.M.J., Van Pelt, J.A., Van Wees, S.C.M., Ton, J., Léon-Kloosterziel, K.M., Keurentjes, J.J.B., Verhagen, B.W.M., Knoester, M., Van der Sluis, I., Bakker, P.A.H.M. and Van Loon, L.C. (2001). Rhizobacteria-mediated induced systemic resistance: triggering, signalling, and expression. Eur. J. Plant Pathol. 107: 51-61 (pdf).
• Szurek, B., Marois, E., Bonas, U. and Van den Ackerveken, G. (2001) Eukaryotic features of the Xanthomonas type III effector AvrBs3: protein domains involved in transcriptional activation and the interaction with nuclear import receptors from pepper.  Plant J. 26, 523-534.
• Ton, J. (2001). Rhizobacteria-mediated induced systemic resistance in Arabidopsis: molecular-genetic basis of induced resistance in relation to basal resistance, pp. 1-136, Ph.D. Thesis Utrecht University, ISBN 90-393-2629-0 (pdf).
• Ton, J., Davison, S., Van Loon, L.C. and Pieterse, C.M.J. (2001). Heritability of rhizobacteria-mediated induced systemic resistance and basal resistance in Arabidopsis. Eur. J. Plant Pathol. 107: 63-68 (pdf).
• Ton, J., Davison, S., Van Wees, S.C.M., Van Loon, L.C. and Pieterse, C.M.J. (2001). The Arabidopsis ISR1 locus controlling rhizobacteria-mediated induced systemic resistance is involved in ethylene signaling. Plant Physiol. 125: 652-661 (pdf).

2000

• Bonas, U., Van den Ackerveken, G., Büttner, D., Hahn, K., Marois, E., Nennstiel, D., Noel, L., Rossier O., and Szurek B. (2000). How the bacterial plant pathogen Xanthomonas campestris pv. vesicatoria conquers the host? Mol. Plant Pathol. 1, 73-76.
• Folders, J., Tomassen, J., Van Loon, L.C. and Bitter, W. (2000). Identification of a chitin-binding protein secreted by Pseudomonas aeruginosa. J. Bacteriol. 182: 1257-1263 (pdf).
• Pieterse, C.M.J., Van Pelt, J.A., Ton, J., Parchmann, S., Mueller, M.J., Buchala, A.J., Métraux, J.-P. and Van Loon, L.C. (2000). Rhizobacteria-mediated induced systemic resistance (ISR) in Arabidopsis requires sensitivity to jasmonate and ethylene but is not accompanied by an increase in their production. Physiol. Mol. Plant Pathol. 57: 123-134 (pdf).
• Pieterse, C.M.J., Van Wees, S.C.M., Ton, J., Léon-Kloosterziel, K.M., Van Pelt, J.A., Keurentjes, J.J.B., Knoester, M. and Van Loon, L.C. (2000). Rhizobacteria-mediated induced systemic resistance (ISR) in Arabidopsis: involvement of jasmonate and ethylene. In: Biology of Plant-Microbe Interactions, Volume 2 (P.J.G.M. De Wit, T. Bisseling and W.J. Stiekema, eds), The International Society for Molecular Plant-Microbe Interactions, St. Paul, MN., pp. 291-296 (pdf).
• Rossier. O., Van den Ackerveken, G., and Bonas, U. (2000) HrpB2 and HrpF from Xanthomonas are type III-secreted proteins and essential for pathogenicity and recognition by the host plant. Mol Microbiol. 38, 828-838.
• Slusarenko, A.J., Fraser, R.S.S. and Van Loon, L.C. (eds) (2000). Mechanisms of Resistance to Plant Diseases. Kluwer Academic Publishers, Dordrecht, The Netherlands, 620 pp.
• Van Loon, L.C. (2000). Helping plants to defend themselves: biocontrol by disease-suppressing rhizobacteria. In: Developments in Plant Genetics and Breeding, vol 6; Phytosfere '99, Highlights in European Plant Biotechnology Research and Technology Transfer (G.E. de Vries and K. Metzlaff, eds), Elsevier, Amsterdam, The Netherlands, pp. 203-213.
• Van Loon, L.C. (2000). Systemic induced resistance. In: Mechanisms of Resistance to Plant Diseases (A.J. Slusarenko, R.S.S. Fraser and L.C. Van Loon, eds), Kluwer Academic Publishers, Dordrecht, The Netherlands, pp. 521-574.
• Van Wees, S.C.M., De Swart, E.A.M., Van Pelt, J.A., Van Loon, L.C. and Pieterse, C.M.J. (2000). Enhancement of induced disease resistance by simultaneous activation of salicylate- and jasmonate-dependent defense pathways in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA. 97: 8711-8716 (pdf).
• Verberne, M.C. Verpoorte, R., Bol, J.F., Mercado-Blanco, J. and Linthorst, H.J.M. (2000). Overproduction of salicylic acid in plants by bacterial transgenes enhances pathogen resistance. Nature Biotechnol. 18, 779-783 (pdf).

1999

• De Boer, M., Van der Sluis, I., Van Loon, L.C. and Bakker, P.A.H.M. (1999). Combining fluorescent Pseudomonas spp. strains to enhance suppression of fusarium wilt of radish. Eur. J. Plant Pathol. 105: 201-210 (pdf).
• Bonas, U. and Van den Ackerveken, G. (1999) Gene-for-gene interactions: bacterial avirulence proteins specify plant disease resistance. Curr. Opinion Microbiol. 2, 94-98.
• Duijff, B.J., Recorbet, G., Bakker, P.A.H.M., Loper, J.E. and Lemanceau, P. (1999). Microbial antagonism at the root level is involved in suppression of Fusarium wilt by the combination of nonpathogenic Fusarium oxysporum Fo47 and Pseudomonas putida WCS358. Phytopathology 89, 1073-1079 (pdf).
• Glandorf, D.C.M., Verheggen, P., Jansen, T., Thomashow, L.S., Leeflang, P., Smit, E., Wernars, K., Bakker, P.A.H.M. and Van Loon, L.C. 1999. Field release of genetically modified Pseudomonas putida WCS358r to study effects on the indiginous soil microflora. In: Workshop Proceedings Leeuwenhorst Congress Centre Noordwijkerhout, the Netherlands, March 5-6, 1998, pp. 41-46. Coordination Commission Risk Assessment Research (CCRO).
• Knoester, M., Pieterse, C.M.J., Bol, J.F. and Van Loon, L.C. (1999). Systemic resistance in Arabidopsis induced by rhizobacteria requires ethylene-dependent signaling at the site of application. Mol. Plant-Microbe Interact. 12: 720-727 (pdf).
• Pieterse, C.M.J. and Van Loon, L.C. (1999). Salicylic acid-independent plant defence pathways. Trends Plant Sci. 4: 52-58 (pdf).
• Simons, B.H., Millenaar, F.F., Mulder, L., Van Loon, L.C. and Lambers, H. (1999). Enhanced expression and activation of the alternative oxidase during infection of Arabidopsis thaliana with Pseudomonas syringae pv. tomato. Plant Physiol. 120: 529-538 (pdf).
• Smit, E., Leeflang, P., Glandorf, B., Van Elsas, J.D. and Wernars, K. (1999). Analysis of fungal diversity in the wheat rhizosphere by sequencing of cloned PCR-amplified genes encoding 18S rRNE and temperature gradient gel electrophoresis. Appl. Environm. Microbiol. 65: 2614-2621.
• Steijl, H., Niemann, G.J. and Boon, J.J. (1999). Changes in chemical composition related to fungal infection and induced resistance in carnation and radish investigated by pyrolysis mass spectrometry. Physiol. Mol. Plant Pathol. 55: 297-311 (pdf).
• Ton, J., Pieterse, C.M.J. and Van Loon, L.C. (1999). Identification of a locus in Arabidopsis controlling both the expression of rhizobacteria-mediated induced systemic resistance (ISR) and basal resistance against Pseudomonas syringae pv. tomato. Mol. Plant-Microbe Interact. 12: 911-918 (pdf).
• Van Loon, L.C. (1999). Occurence and properties of plant pathogenesis-related proteins. In: Pathogenesis-Related Proteins in Plants (S.K. Datta and S. Muthukrishnan, eds), pp. 1-19. CRC Press, Boca Raton, FL.
• Van Loon, L.C. and Van Strien, E.A. 1999. The families of pathogenesis-related proteins, their activities, and comparative analysis of PR-1 type proteins. Physiol. Mol. Plant Pathol. 55: 85-97 (pdf).
• Van Wees, S.C.M. (1999). Rhizobacteria-mediated induced systemic resistance in Arabidopsis: signal transduction and expression, pp. 1-137, Ph.D. Thesis Utrecht University, ISBN 90-393-2174-4 (pdf).
• Van Wees, S.C.M., Luijendijk, M., Smoorenburg, I., Van Loon, L.C. and Pieterse, C.M.J. (1999). Rhizobacteria-mediated induced systemic resistance (ISR) in Arabidopsis is not associated with a direct effect on expression of known defense-related genes, but stimulates the expression of the jasmonate-inducible gene Atvsp upon challenge. Plant Mol. Biol. 41: 537-549 (pdf).

1998

• Alabouvette, C., Schippers, B., Lemanceau, P. and Bakker, P.A.H.M. (1998). Biological control of fusarium wilts: towards development of commercial products. In: Plant-Microbe Interactions and Biological Control (G.J. Boland and L.D. Kuykendall, eds), pp. 15-36. Marcel Dekker, New York (pdf).
• Bakker, P.A.H.M., Raaijmakers, J.M. and Schippers, B. (1998). Siderophore receptor as a marker to track fluorescent Pseudomonas spp. In: Molecular Microbial Ecology Manual (A.D.L. Akkermans, J.D. Van Elsas and F.J. De Bruijn, eds), 6.1.4. pp. 1-9, Kluwer, Dordrecht.
• De Boer, M., Van der Sluis, I., Van Loon, L.C. and Bakker, P.A.H.M. (1998). In vitro compatibility between fluorescent Pseudomonas spp. strains can increase effectivity of Fusarium wilt control by combinations of these strains. In: Molecular Approaches to Biological Control (B.K. Duffy, U. Rosenberger and G. DJfago, eds), IOBC/wprs Bulletin 21(9): 257-262 (pdf).
• Chin-A-Woeng, T., Bloemberg, G.V., Van der Bij, A., Van der Drift, K.M.G.M., Schripsema, J., Kroon, B., Scheffer, R.J., Keel, C., Bakker, P.A.H.M., Tichy, H.V., De Bruijn, F.J., Thomas-Oates, J.E. and Lugtenberg, B.J.J. (1998). Biocontrol by phenazine-1-carboxamide-producing Pseudomonas chlororaphis PCL1391 of tomato root rot caused by Fusarium oxysporum f.sp. radicis-lycopersici. Mol. Plant-Microbe Interact. 11:1069-1077.
• Dekkers, L.C., Van der Bij, A.J., Mulders, I.H.M., Phoelich, C.C., Wentwoord, R.A.R., Glandorf, D.C.M., Wijffelman, C.A. and Lugtenberg. B.J.J. (1998). Role of the 0-antigen of lipopolysaccharide, and possible roles of growth rate and of NADH:ubiquinone oxidoreductase (nuo) in competitive tomato root-tip colonization by Pseudomonas fluorescens WCS356. Mol. Plant-Microbe Interact. 11:763-771.
• Knoester, M. (1998). The Involvement of Ethylene in Plant Disease Resistance, pp.1-124, Ph.D. Thesis Utrecht University, ISBN 90-393-1815-8.
• Knoester, M., Van Loon, L.C., Van den Heuvel, J., Hennig, J., Bol, J.F. and Linthorst, H.J.M. (1998). Ethylene-insensitive tobacco lacks nonhost resistance against soil-borne fungi. Proc. Natl. Acad. Sci. USA 95: 1933-1937 (pdf).
• Mercado-Blanco, J., Olsson, P.E., Van der Sluis, I., Van der Drift, K.M.G.M., Thomas-Oates, J.E., Van Loon, L.C. and Bakker, P.A.H.M. (1998). Analysis of a gene cluster involved in the biosynthesis of a new salicylic acid-based siderophore and its implication for the suppression of Fusarium wilt by Pseudomonas fluorescens WCS374. In: Molecular Approaches to Biological Control (B.K. Duffy, U. Rosenberger and G. Défago, eds), IOBC/wprs Bulletin 21(9): 35-40.
• Pieterse, C.M.J., Van Wees, S.C.M., Van Pelt, J.A., Knoester, M., Laan, R., Gerrits, H., Weisbeek, P.J. and Van Loon, L.C. (1998). A novel signaling pathway controlling induced systemic resistance in Arabidopsis. Plant Cell 10: 1571-1580 (pdf).
• Pieterse, C.M.J., Van Wees, S.C.M., Van Pelt, J.A. and Van Loon, L.C. A novel defence pathway in Arabidopsis induced by biocontrol bacteria. Med. Fac. Landbouww. Univ. Gent 63(3b): 931-940 (pdf).
• Ton, J., Pieterse, C.M.J. and Van Loon, L.C. (1998). Genetic analysis of induced systemic resistance in Arabidopsis thaliana: association between induced and basal resistance. In: Molecular Approaches to Biological Control (B.K. Duffy, U. Rosenberger and G. Défago, eds), IOBC/wprs Bulletin 21(9): 111-115 (pdf).
• Van Loon, L.C. (1998). Biotechnology as a means to improve biological control of plant diseases. Med. Fac. Landbouww. Univ. Gent 63: 1657-1666.
• Van Loon, L.C., Bakker, P.A.H.M. and Pieterse, C.M.J. (1998). Systemic resistance induced by rhizosphere bacteria. Annu. Rev. Phytopathol. 36: 453-483 (pdf).
• Van Loon, L.C., Bakker, P.A.H.M. and Pieterse, C.M.J. (1998). Induction and expression of PGPR-mediated induced resistance against pathogens. In: Molecular Approaches to Biological Control (B.K. Duffy, U. Rosenberger and G. Défago, eds), IOBC/wprs Bulletin 21(9): 103-110 (pdf).

1997

• Bonas, U. and Van den Ackerveken, G. (1997) Recognition of bacterial avirulence proteins occurs inside the plant cell: a general phenomenon in resistance to bacterial diseases? Plant J. 12, 1-7.
• De Boer, M., Van der Sluis, I., Van Loon, L.C. and Bakker, P.A.H.M. (1997). In vitro compatibility between fluorescent Pseudomonas spp. strains can increase effectivity of Fusarium wilt control by combinations of these strains. In: Plant Growth-Promoting Rhizobacteria - Present Status and Future Prospects (A. Ogoshi, K. Kobayashi, Y. Homma, F. Kodama, N. Kondo and S. Akino, eds.), pp. 380-382. Faculty of Agriculture, Hokkaido University, Sapporo, Japan.
• Glandorf, D.C.M., Bakker, P.A.H.M. and Van Loon, L.C. (1997). Influence of the production of antibacterial and antifungal proteins by transgenic plants on the saprophytic soil microflora. Acta Bot. Neerl. 46: 85-104 (pdf).
• Glandorf, D.C.M., Thomashow, L.S., Smit, E., Wernars, K., Bakker, P.A.H.M. and Van Loon, L.C. (1997). Field release of genetically modified Pseudomonas putida WCS358R to study effects on the indigenous soil microflora: preliminary experiments. In: Plant Growth-Promoting Rhizobacteria - Present Status and Future Prospects (A. Ogoshi, K. Kobayashi, Y. Homma, F. Kodama, N. Kondo and S. Akino, eds.), pp. 428-430. Faculty of Agriculture, Hokkaido University, Sapporo, Japan.
• Govers, F., Drenth, A., Pieterse, C.M.J. (1997). The potato late blight pathogen Phytophthora infestans and other pathogenic oomycota. In: The Mycota, Vol. V, Part B: Plant Relationships (G.C. Carroll and P. Tudzynski, eds.), pp. 17-36. Springer, Berlin (pdf).
• Hoffland, E., Bakker, P.A.H.M. and Van Loon, L.C. (1997). Multiple disease protection by rhizobacteria that induce systemic resistance - reply. Phytopathology 87: 138 (pdf).
• Klerk, H. and Van Loon, L.C. (1997). Characteristics of protein turnover in the developing first leaf of oats (Avena sativa L.). J. Plant Physiol. 151: 176-187.
• Knoester, M., Bol, J.F., van Loon, L.C. and Linthorst, H.J.M. (1997). Modulation of ethylene production in transgenic tobacco. In: Biology and Biotechnology of the Plant Hormone Ethylene (A.K. Kanellis et al., eds.), pp. 347-354. Kluwer, Dordrecht.
• Knoester, M., Hennig, J., Van Loon, L.C., Bol, J.F. and Linthorst, H.J.M. (1997). Isolation and characterization of a tobacco cDNA encoding an ETR1 homolog. Plant Physiol. 115: 1731.
• Knoester, M., Linthorst, H.J.M., Bol, J.F. and Van Loon, L.C. (1997). Modulation of stress-inducible ethylene biosynthesis by sense and antisense gene expression in tobacco. Plant Science 126: 173-183.
• Laugé, R. Joosten, M.H.A.J., Van den Ackerveken, G.F.J.M., Van den Broek, H.W.J. and De Wit, P.J G.M. (1997) The in planta-produced extracellular proteins ECP1 and ECP2 of Cladosporium fulvum are virulence factors. Mol. Plant-Microbe Interact. 10, 725-734.
• Mercado-Blanco, J., Olsson, P.E., Van der Drift, K.M.G.M., Thomas-Oates, J.E., Van Loon, L.C. and Bakker, P.A.H.M. (1997). Analysis of a gene cluster involved in the production of salicylic acid and a new siderophore in Pseudomonas fluorescens WCS374. In: Plant Growth-Promoting Rhizobacteria - Present Status and Future Prospects (A. Ogoshi, K. Kobayashi, Y. Homma, F. Kodama, N. Kondo and S. Akino, eds.), pp. 355-357. Faculty of Agriculture, Hokkaido University, Sapporo, Japan.
• Schippers, B. and Roosje, G.S. (1997). Hundred years of history and the future of the foundation "Willie Commelin Scholten Phytopathological Laboratory". Eur. J. Plant Pathol. 103: 667-671 (pdf).
• Schippers, B. and Scheffer, R. (1997). Jas voor radijs; beschermen met bacteriën. Natuur en Techniek 65: 66-77.
• Van Loon, L.C., Bakker, P.A.H.M. and Pieterse, C.M.J. (1997). Mechanisms of PGPR-induced resistance against pathogens. In: Plant Growth-Promoting Rhizobacteria - Present Status and Future Prospects (A. Ogoshi, K. Kobayashi, Y. Homma, F. Kodama, N. Kondo and S. Akino, eds.), pp. 50-57. Faculty of Agriculture, Hokkaido University, Sapporo, Japan (pdf).
• Van Loon, L.C. (1997). Induced resistance and the role of pathogenesis-related proteins. Eur. J. Plant Pathol. 103: 753-765 (pdf).
• Van Wees, S.C.M., Pieterse, C.M.J., Trijssenaar, A., Van 't Westende, Y., Hartog, F. and Van Loon, L.C. (1997). Differential induction of systemic resistance in Arabidopsis by biocontrol bacteria. Mol. Plant-Microbe Interact. 10: 716-724 (pdf).
• Van den Ackerveken, G. and Bonas, U. (1997) Bacterial avirulence proteins as triggers of plant disease resistance. Trends Microbiol. 5, 394-398.

1996

• Bol, J.F., Buchel, A.S., Knoester, M., Baladin, T., Van Loon, L.C. and Linthorst, H.J.M. (1996). Regulation of the expression of plant defence genes. Plant Growth Regulation 18: 87-91.
• De Boer, M., Van Loon, L.C. and Bakker, P.A.H.M. (1996). Biological control of fusarium wilt of radish by combinations of fluorescent Pseudomonas spp. strains. in: Biological and Integrated Control of Root Diseases in Soilless Cultures (C. Alabouvette, ed.), IOBC wprs Bulletin 19: 47-52 (pdf).
• De Weger, L.A., Bloemberg, G.V., Van Wezel, T., Van Raamsdonk, M., Glandorf, D.C.M., Van Vuurde, J., Jann, K. and Lugtenberg, B.J.J. (1996). A novel cell surface polysaccharide in Pseudomonas putida WCS358, which shares characteristics with Escherichia coli K antigens, is not involved in root colonization. J. Bacteriol. 178: 1955-1961.
• Folders, J., De Groot, A., Van Loon, L.C. and Tommassen, J. (1996). Biocontrol of soil-borne plant pathogens by means of biotechnology. in: Biological and Integrated Control of Root Diseases in Soilless Cultures (C. Alabouvette, ed.), IOBC wprs Bulletin 19: 115-119.
• Hoffland, E., Hakulinen, J. and Van Pelt, J.A. (1996). Comparison of systemic resistance induced by avirulent and nonpathogenic Pseudomonas species. Phytopathology 86: 757-762.
• Hoffland, E., Niemann, G.J., Van Pelt, J.A., Pureveen, J.B.M., Eijkel, G.B., Boon, J.J. and Lambers, H. (1996). Relative growth rate correlates negatively with pathogen resistance in radish: the role of plant chemistry. Plant Cell Environ. 19: 1281-1290.
• Leeman M., Den Ouden, F.M, Van Pelt, J.A., Cornelissen, C., Matamala-Garros, A., Bakker, P.A.H.M. and Schippers, B. (1996). Suppression of fusarium wilt of radish by co-inoculation of fluorescent Pseudomonas spp. and root-colonizing fungi. Eur. J. Plant Pathol. 102: 21-31 (pdf).
• Leeman, M., Den Ouden, F.M., Van Pelt, J.A., Dirkx, F.P.M., Steijl, H., Bakker, P.A.H.M. and Schippers, B. (1996). Iron availability affects induction of systemic resistance to fusarium wilt of radish by Pseudomonas fluorescens. Phytopathology 86: 149-155 (pdf).
• Pieterse, C.M.J., Van Wees, S.C.M., Hoffland, E., Van Pelt, J.A. and Van Loon, L.C. (1996). Systemic resistance in Arabidopsis induced by biocontrol bacteria is independent of salicylic acid accumulation and pathogenesis-related gene expression. Plant Cell 8: 1225-1237 (pdf).
• Pieterse, C.M.J., Van Wees, S.C.M., Van Pelt, J.A., Trijssenaar, A., Van 't Westende, Y.A.M., Bolink, E.M. and Van Loon, L.C. (1996). Systemic resistance in Arabidopsis thaliana induced by biocontrol bacteria. Med. Fac. Landbouww. Univ. Gent 61/2a: 209-220 (pdf).
• Van den Ackerveken, G., Marois, E. and Bonas, U. (1996). Recognition of the bacterial avirulence protein AvrBs3 occurs inside the host plant cell. Cell 87, 1307-1316.
• Van Loon, L.C. (1996). Disease-suppressive actions of Pseudomonas bacteria: induced resistance. in: Biological and Integrated Control of Root Diseases in Soilless Cultures (C. Alabouvette, ed.), IOBC wprs Bulletin 19: 53-61.
• Wengelnik, K., Van den Ackerveken, G. and Bonas, U. (1996). HrpG, a key hrp regulatory protein of Xanthomonas campestris pv. vesicatoria is homologous to two-component response regulators. Mol. Plant-Microbe Interact. 9, 704-712.

1995

• Bakker, P.A.H.M., Raaijmakers, J.M., Leeman, M., Van der Sluis, I., Van Pelt, J.A. and Schippers, B. (1995). Effects of the pseudobactin uptake protein A on the ecology of rhizosphere pseudomonads. in: The Biosafety Results of Field Tests of Genetically Modified Plants and Organisms (D.D. Jones, ed.), pp. 143-148. University of California, Oakland, CA, USA.
• Cornelussen, M.H.M., Karssen, C.M. and Van Loon, L.C. (1995). UV-induced cross-linking of abscisic acid to binding proteins. Phytochemistry 39: 959-968.
• Duijff, B.J., Erkelens, A., Bakker, P.A.H.M. and Schippers, B. (1995). Influence of pH on suppression of fusarium wilt of carnation by Pseudomonas fluorescens WCS417r. J. Phytopathol. 143: 217-222 (pdf).
• Glandorf, D.C.M., Bakker, P.A.H.M. and Van Loon, L.C. (1995). Influence of the expression of antibacterial and antifungal genes in transgenic plants on the saprophytic soil microflora. in: Unanswered Safety Questions when Employing GMO's. Workshop Proceedings Leeuwenhorst Congress Centre Noordwijkerhout, the Netherlands, May 2-4, 1995, pp.111-115. Coordination Commission Risk Assessment Research (CCRO) (pdf).
• Hoffland, E., Pieterse, C.M.J., Bik, L. and Van Pelt, J.A. (1995). Induced systemic resistance in radish is not associated with accumulation of pathogenesis-related proteins. Physiol. Mol. Plant Pathol. 46: 309-320 (pdf).
• Hoffland, E., Pieterse, C.M.J., Bik, L. and Van Pelt, J.A. (1995). Induced resistance in Arabidopsis and radish: involvement of PR proteins. in: Environmental Biotic Factors in Integrated Plant Disease Control (M. Ma½ka, ed.). Proceedings 3rd Conference of European Foundation for Plant Pathology Poznan, Poland, September 5-9, 1994, pp. 265-268. The Polish Phytopathological Society, Poznan (pdf).
• Knoester, M., Bol, J.F., Van Loon, L.C. and Linthorst, H.J.M. (1995). Virus-induced gene expression for enzymes of ethylene biosynthesis in hypersensitively reacting tobacco. Mol. Plant-Microbe Interact. 8: 177-180.
• Leeman, M. (1995). Suppression of Fusarium Wilt of Radish by Fluorescent Pseudomonas spp. Induction of disease resistance, co-inoculation with fungi and commercial application. Ph.D. Thesis Utrecht University, 118 pp.
• Leeman, M., Van Pelt, J.A., Den Ouden, F.M., Heinsbroek, M., Bakker, P.A.H.M. and Schippers, B. (1995). Induction of systemic resistance by Pseudomonas fluorescens in radish cultivars differing in susceptibility to fusarium wilt, using a novel bioassay. Eur. J. Plant Pathol. 101: 655-664 (pdf).
• Leeman, M., Van Pelt, J.A., Den Ouden, F.M., Heinsbroek, M., Bakker, P.A.H.M. and Schippers, B. (1995). Induction of systemic resistance against fusarium wilt of radish by lipopolysaccharides of Pseudomonas fluorescens. Phytopathology 85: 1021-1027 (pdf).
• Leeman, M., Van Pelt, J.A., Hendrickx, M.J., Scheffer, R.J., Bakker, P.A.H.M. and Schippers, B. (1995). Biocontrol of fusarium wilt of radish in commercial greenhouse trials by seed treatment with Pseudomonas fluorescens WCS374. Phytopathology 85: 1301-1305 (pdf).
• Pieterse, C.M.J., Van 't Klooster, J., Van den Berg-Velthuis, G.C.M. and Govers. F. (1995). NiaA, the structural nitrate reductase gene of Phytophthora infestans: isolation, characterization and expression analysis in Aspergillus nidulans. Curr. Genet. 27: 359-366 (pdf).
• Raaijmakers, J.M., Van der Sluis, I., Koster, M., Bakker, P.A.H.M., Weisbeek, P.J. and Schippers, B. (1995). Utilization of heterologous siderophores and rhizosphere competence of fluorescent Pseudomonas spp. Can. J. Microbiol. 41: 126-135 (pdf).
• Raaijmakers, J.M., Leeman, M., Van Oorschot, M.M.P., Van der Sluis, I., Schippers, B. and Bakker, P.A.H.M. (1995). Dose-response relationships in biological control of fusarium wilt of radish by Pseudomonas spp. Phytopathology 85: 1075-1081 (pdf).
• Raaijmakers, J.M., Van der Sluis, I., Van den Hout, M., Bakker, P.A.H.M. and Schippers, B. (1995). Dispersal of wild-type and genetically-modified Pseudomonas spp from treated seeds or soil to aerial parts of radish plants. Soil Biol. Biochem. 27: 1473-1478 (pdf).
• Schippers, B., Scheffer, R.J., Lugtenberg, B.J.J. and Weisbeek, P.J. (1995). Biocoating of seeds with plant growth-promoting rhizobacteria to improve plant establishment. Outlook on Agriculture 24: 179-185.
• Steijl, H., Van der Sluis, I., Van den Heuvel, J. and Van Loon, L.C. (1995). Aspects of induced resistance in radish; effects of PGPR induced systemic resistance on disease progress. in: Environmental Biotic Factors in Integrated Plant Disease Control (M. Ma½ka, ed.). Proceedings 3rd Conference of European Foundation for Plant Pathology Poznan, Poland, September 5-9, 1994, pp. 523-526. The Polish Phytopathological Society, Poznan.
• Van den Heuvel, J., Van Dam, J.A.C. and Van der Sluis, I. (1995). How general is the induction of resistance by nonpathogenic rhizobacteria? In: Environmental Biotic Factors in Integrated Plant Disease Control (M. Ma½ka, ed.), Proceedings 3rd Conference of European Foundation for Plant Pathology Poznan, Poland, September 5-9, 1994, pp. 261-264. The Polish Phytopathological Society, Poznan.
• Van der Wolf, J.M., Van Beckhoven, J.R.C.M., De Vries, P.M., Raaijmakers, J.M., Bakker, P.A.H.M., Bertheau, Y. and Van Vuurde, J.W.L. (1995). Polymerase chain reaction for verification of fluorescent colonies of Erwinia chrysanthemi and Pseudomonas putida WCS358 in immunofluorescence colony staining. J. Appl. Microbiol. 79: 569-577 (pdf).

1994

• Duijff, B.J. (1994). Suppression of Fusarium Wilt by Fluorescent Pseudomonas spp.; Mechanisms, Influence of Environmental Factors and Effects on Plant Iron Nutrition. Ph.D. Thesis Utrecht University, 95 pp.
• Duijff, B.J., Bakker, P.A.H.M. and Schippers, B. (1994). Ferric pseudobactin 358 as an iron source for carnation. J. Plant Nutrition 17: 2069-2078 (pdf).
• Duijff, B.J., Bakker, P.A.H.M. and Schippers, B. (1994). Suppression of fusarium wilt of carnation by Pseudomonas putida WCS358 at different levels of disease incidence and iron availability. Biocontrol Sci. Technol. 4: 279-288 (pdf).
• Duijff, B.J., Kogel, W.J. de, Bakker, P.A.H.M. and Schippers, B. (1994). Influence of pseudobactin 358 on the iron nutrition of barley. Soil Biol. Biochem. 26: 1681-1688 (pdf).
• Duijff, B.J., Kogel, W.J. de, Bakker, P.A.H.M. and Schippers, B. (1994). Significance of pseudobactin 358 for the iron nutrition of plants. in: Improving plant productivity with rhizosphere bacteria (M.H. Ryder, P.M. Stephens and G.D. Bowen, eds), pp. 142-144. CSIRO, Adelaide, Australia.
• Glandorf, D.C.M., Sluis, I. van der, Anderson, A.J., Bakker, P.A.H.M. and Schippers, B. (1994). Agglutination, adherence and root colonization by fluorescent pseudomonads. Appl. Environ. Microbiol. 60: 1726-1733 (pdf).
• Lugtenberg, B.J.J., Weger, L.A. de and Schippers, B. (1994). Bacterization to protect seed and rhisosphere against disease. In: BCPC Monograph No 57: Seed Treatment: Progress and Prospects, pp. 293-302.
• Niemann, G.J. (1994). A crucial role of phenolic metabolism in resistance of carnations to wilt diseases. Acta Horticult. 381: 565-571.
• Niemann, G.J. and Steijl, H. (1994). Phenolics in the interaction Pseudomonas sp./Dianthus caryophyllus/Fusarium oxysporum f.sp. dianthi. Acta Horticult. 381: 572-575.
• Pieterse, C.M.J., Derksen, A.-M.C.E., Folders, J. and Govers, F. (1994). Expression of the ipiB and ipiO genes of Phytophthora infestans in planta and in vitro. Mol. Gen. Genet. 244: 269-277 (pdf).
• Pieterse, C.M.J., Van West, P., Verbakel, H.M., Brassé, P.W.H.M., Van den Berg-Velthuis, G.C.M. and Govers, F. (1994). Structure and genomic organization of the ipiB and ipiO gene clusters of Phytophthora infestans. Gene 138: 67-77 (pdf).
• Raaijmakers, J.M. (1994). Microbial Interactions in the Rhizosphere; Root Colonization by Pseudomonas spp. and Suppression of Fusarium Wilt. Ph.D. Thesis Utrecht University, 127 pp.
• Raaijmakers, J.M., Bitter, W., Punte, H.L.M., Bakker, P.A.H.M., Weisbeek, P.J. and Schippers, B. (1994). Siderophore receptor PupA as a marker to monitor wild-type Pseudomonas putida WCS358 in natural environments. Appl. Environ. Microbiol. 60: 1184-1190 (pdf).
• Van Loon, L.C. (1994). De plant tussen belagers en beschermers. Gewasbescherming 25: 20-26.
• Van Loon, L.C., Pierpoint, W.S., Boller, Th. and Conejero, V. 1994. Recommendations for naming plant pathogenesis-related proteins. Plant Mol. Biol. Reporter 12: 245-264.

1993

• Duijff, B.J., Meijer, J.W., Bakker, P.A.H.M. and Schippers, B. (1993). Siderophore-mediated competition for iron and induced resistance in the suppression of fusarium wilt of carnation by fluorescent Pseudomonas spp. Neth. J. Plant Pathol. 99: 277-289 (pdf).
• Glandorf, D.C.M., Peters, L.G.L., Van der Sluis, I., Bakker, P.A.H.M. and Schippers, B. (1993). Crop specificity of rhizosphere pseudomonads and the involvement of root agglutinins. Soil Biol. Biochem. 25: 981-989.
• Govers, F. and Pieterse, C.M.J. (1993). List of cloned genes in Phytophthora infestans. Phytophthora Newsletter 19: 1 (pdf).
• Judelson, H.S., Dudler, R., Pieterse, C.M.J., Unkles, S.E. and Michelmore, R.W. (1993). Expression and antisense inhibition of transgenes in Phytophthora infestans is modulated by choice of promoter and position effects. Gene 133: 63-69 (pdf).
• Klerk, H., Rebers, M. and Van Loon, L.C. (1993). Effects of light and regulators on senescence-related changes in soluble proteins in detached oat (Avena sativa L.) leaves. Plant Growth Regul. 13: 137-145.
• Lemanceau, P., Bakker, P.A.H.M., De Kogel, W.J., Alabouvette, C. and Schippers, B. (1993). Antagonistic effect of nonpathogenic Fusarium oxysporum F047 and pseudobactin 358 upon pathogenic Fusarium oxysporum f.sp. dianthi. Appl. Environ. Microbiol. 59: 74-82 (pdf).
• Niemann, G.J. (1993). The anthranilamide phytoalexins of the Caryophyllaceae and related compounds. Phytochemistry 34: 319-328.
• Pieterse, C.M.J. (1993). Differential gene expression in Phytophthora infestans during pathogenesis on potato. Ph.D. Thesis, Wageningen Agricultural University (pdf).
• Pieterse, C.M.J., Riach, M.B.R., Bleker, T., Van den Berg-Velthuis, G.C.M. and Govers, F. (1993). Isolation of putative pathogenicity genes of the potato late blight fungus Phytophthora infestans by differential hybridization of a genomic library. Physiol. Mol. Plant Pathol. 43: 69-79 (pdf).
• Pieterse, C.M.J., Verbakel, H.M., Hoek Spaans, J., Davidse, L.C. and Govers, F. (1993). Increased expression of the calmodulin gene of the late blight fungus Phytophthora infestans during pathogenesis on potato. Mol. Plant-Microbe Interact. 6: 164-172 (pdf).
• Schippers, B. (1993). Exploitation of microbial mechanisms to promote plant health and plant growth. Phytoparasitica 21: 275-279 (guest editorial).
• Van den Boogert, P.H.J.F. (1993). The cology of Verticillium biguttatum, its significance for the population dynamics of Rhizoctonia solani in potato. Ph.D. Thesis Utrecht University, 116 pp.
• Van Loon, L.C. (1993). De plant tussen belagers en beschermers. Oratie Universiteit Utrecht, 20 pp.
• Van Loon, L.C. (1993). Plant defences. in: Defence Mechanisms, pp. 77-142, 380-383. Biotol Series, Butterworth/Heinemann, Oxford, UK.
• Van Loon, L.C. and Pennings, G.G.H. (1993). Involvement of ethylene in the induction of systemic acquired resistance in tobacco. In: Mechanisms of Plant Defense Responses (B. Fritig and M. Legrand, eds), pp. 156-159. Kluwer, Dordrecht.
• Van Loon, L.C., Bakker, P.A.H.M. and Scheffer, R.J. (1993). Seed treatment with bacteria protects plants against soil-borne diseases. Profyta 4: 14-17.
• Wijdeveld, M.M.G., Goldbach, R.W., Meurs, C. and Van Loon, L.C. (1993). On the relationship between X-bodies and symptom development in plants infected with different tobamoviruses. Archiv. Virol. 133: 143-155.

PDF-files of selected papers of before 1993

1992

• Glandorf, D.C.M., Brand, I., Bakker, P.A.H.M. and Schippers, B. (1992). Stability of rifampicin resistance as a marker for root colonization studies of Pseudomonas putida in the field. Plant Soil 147: 135-142 (pdf).
• Kloepper, J.W., Schippers, B. and Bakker, P.A.H.M. (1992). Proposed elimination of the term endorhizosphere. Phytopathology 82: 726-727 (pdf).
• Lemanceau, P., Bakker, P.A.H.M., De Kogel, W.J., Alabouvette, C. and Schippers, B. (1992). Effect of pseudobactin production by Pseudomonas putida WCS358 on suppression of Fusarium wilt of carnations by non-pathogenic Fusarium oxysporum Fo47. Appl. Environ. Microbiol. 58: 2978-2982 (pdf).
• Pieterse, C.M.J., de Wit, P.J.G.M. and Govers, F. (1992). Molecular aspects of the potato-Phytophthora infestans interaction. Neth. J. Plant Pathol. 98 Supplement 2: 85-92 (pdf).
• Van Peer, R. and Schippers, B. (1992). Lipopolysaccharides of plant-growth promoting Pseudomonas sp. strain WCS417r induce resistance in carnation to Fusarium wilt. Neth. J. Plant Pathol. 98: 129-139 (pdf).

1991

• Pieterse, C.M.J. and Govers, F. (1990). Recente ontwikkelingen in het moleculair genetisch onderzoek aan plant-pathogeen interacties. Gewasbescherming 22: 46-47 (pdf).
• Pieterse, C.M.J., Risseeuw, E.P. and Davidse, L.C. (1991). An in planta induced gene of Phytophthora infestans codes for ubiquitin. In: H. Hennecke and D.P.S. Verma (eds.), "Advances in Molecular Genetics of Plant-Microbe Interactions", vol. 1. Kluwer Acacemic Publishers, Dordrecht, pp. 272-275 (pdf).
• Pieterse, C.M.J., Risseeuw, E.P. and Davidse, L.C. (1991). An in planta induced gene of Phytophthora infestans codes for ubiquitin. Plant Mol. Biol. 17: 799-811 (pdf).

1990

• Govers, F., Franssen, H.J., Pieterse, C.M.J., Wilmer, J. and Bisseling, T. (1990). Function and regulation of the early nodulin gene ENOD2. In: G.W. Lycett and D. Grierson (eds.), "Genetic Engineering of Crop Plants". Butterworths, London, pp. 259-269 (pdf).
• Pieterse, C.M.J. and Davidse, L.C. (1990). Attempted cloning of the Phytophthora infestans pyr-gene for use in a homologous transformation system. Phytophthora Newsletter 16: 7-8 (pdf).
• Van Peer, R., Van Kuik, A.J., Rattink, H. and Schippers, B. (1990). Control of Fusarium wilt in carnation grown on rockwool by Pseudomonas sp. strain WCS417r and by Fe-EDDHA. Neth. J. Plant Pathol. 96: 119-132 (pdf).

1988

• Lamers, J.G., Schippers. B. and Geels, F.P. (1988). Soil-borne diseases of wheat in the Netherlands and results of seed bacterization with Pseudomonas against Gaeumannomyces graminis var. tritici. In: Cereal Breeding Related to Integrated Cereal Production, Proceedings of the conference of the Cereal Section of EUCARPIA, Wageningen, the Netherlands, 24-26 February 1988 (M.L. Jorna and L.A.J. Slootmaker, eds.), pp 134-139. Pudoc, Wageningen (pdf).
• Pieterse, C.M.J. and Koornneef, M. (1988). Optimization of direct gene transfer in tomato. In: K.J. Puite, J.J.M. Dons, H.J. Huizing, A.J. Kool, M. Koornneef and F.A. Krens (eds.), "Progress in Plant Protoplast Research". Kluwer Academic Publishers, Dordrecht, pp. 357‑358 (pdf).

1987

• Schippers, B., Bakker, A.W. and Bakker, P.A.H.M. (1987). Interactions of deleterious and beneficial rhizosphere microorganisms and the effect of cropping practices. Annu. Rev. Phytopathol. 25: 339-358 (pdf).
• Bakker, A.W. and Schippers, B. (1987). Microbial cyanide production in the rhizosphere in relation to potato yield reduction and Pseudomonas spp-mediated plant growth-stimulation. Soil Biol. Biochem. 19: 451-457 (pdf).
• Bakker, P.A.H.M., Bakker, A.W., Marugg, J.D., Weisbeek, P.J. and Schippers, B. (1987). Bioassay for studying the role of siderophores in potato growth stimulation by Pseudomonas spp. in short potato rotations. Soil Biol. Biochem. 19: 443-449 (pdf).

1986

• Bakker, P.A.H.M., Lamers, J.G., Bakker, A.W., Marugg, J.D., Weisbeek, P.J. and Schippers, B. (1986). The role of siderophores in potato tuber yield increase by Pseudomonas putida in a short rotation of potato. Neth. J. Plant Pathol. 92: 249-256 (pdf).
• Geels, F.P., Lamers, J.G., Hoekstra, O. and Schippers, B. (1986). Potato plant response to seed tuber bacterization in the field in various rotations. Neth. J. Plant Pathol. 92: 257-272 (pdf).

1983

• Geels, F.P. and Schippers, B. (1983). Selection of antagonistic fluorescent Pseudomonas spp. and their root colonization and persistence following treatment of seed potatoes. Phytopath. Z. 108: 193-206 (pdf).
• Geels, F.P. and Schippers, B. (1983). Reduction of yield depressions in high frequency potato cropping soil after seed tuber treatments with antagonistic fluorescent Pseudomonas spp. Phytopath. Z. 108: 207-214 (pdf).