The publication list below only contains publications from my time at Utrecht University. My full publication list can be found at my Google Scholar and LinkedIn profiles.
Publications
2022
Scholarly publications
Araújo, J. P. M., Lebert, B. M., Vermeulen, S., Brachmann, A., Ohm, R. A., Evans, H. C., & De bekker, C. (2022). Masters of the manipulator: two new hypocrealean genera, Niveomyces (Cordycipitaceae) and Torrubiellomyces (Ophiocordycipitaceae), parasitic on the zombie ant fungus Ophiocordyceps camponoti-floridani. Persoonia: Molecular Phylogeny and Evolution of Fungi, 171-194. https://doi.org/10.3767/persoonia.2022.49.05
Punt, M., Seekles, S. J., van Dam, J. L., de Adelhart Toorop, C., Martina, R. R., Houbraken, J., Ram, A. F. J., Wösten, H. A. B., & Ohm, R. A. (2022). High sorbic acid resistance of Penicillium roqueforti is mediated by the SORBUS gene cluster. PLoS Genetics, 18(6), 1-25. [e1010086]. https://doi.org/10.1371/journal.pgen.1010086
Marian, I. M., Vonk, P. J., Valdes, I. D., Barry, K., Bostock, B., Carver, A., Daum, C., Lerner, H., Lipzen, A., Park, H., Schuller, M. B. P., Tegelaar, M., Tritt, A., Schmutz, J., Grimwood, J., Lugones, L. G., Choi, I-G., Wösten, H. A. B., Grigoriev, I. V., & Ohm, R. A. (2022). The Transcription Factor Roc1 Is a Key Regulator of Cellulose Degradation in the Wood-Decaying Mushroom Schizophyllum commune. mBio, 13(3), 1-19. [e0062822]. https://doi.org/10.1128/mbio.00628-22
Seekles, S. J., Punt, M., Savelkoel, N., Houbraken, J., Wösten, H. A. B., Ohm, R. A., & Ram, A. F. J. (2022). Genome sequences of 24 Aspergillus niger sensu stricto strains to study strain diversity, heterokaryon compatibility and sexual reproduction. G3: Genes, Genomes, Genetics, 12(7), 1-15. [jkac124]. https://doi.org/10.1093/g3journal/jkac124
2021
Scholarly publications
Vonk, P. J., & Ohm, R. A. (2021). H3K4me2 ChIP-Seq reveals the epigenetic landscape during mushroom formation and novel developmental regulators of Schizophyllum commune. Scientific Reports, 11(1), 1-15. [8178]. https://doi.org/10.1038/s41598-021-87635-8
Vos, A. M., Bleichrodt, R-J., Herman, K. C., Ohm, R. A., Scholtmeijer, K., Schmitt, H., Lugones, L. G., & Wösten, H. A. B. (2021). Cycling in degradation of organic polymers and uptake of nutrients by a litter-degrading fungus. Environmental Microbiology, 23(1), 224-238. https://doi.org/10.1111/1462-2920.15297
2020
Scholarly publications
Ohm, R. A. (2020). Fungal Genomics. In J. P. Benz, & K. Schipper (Eds.), Genetics and Biotechnology (3 ed., pp. 207-224). (The Mycota; Vol. 2). Springer Cham. https://doi.org/10.1007/978-3-030-49924-2_9
Will, I., Das, B., Trinh, T., Brachmann, A., Ohm, R. A., & de Bekker, C. (2020). Genetic underpinnings of host manipulation by ophiocordyceps as revealed by comparative transcriptomics. G3: Genes, Genomes, Genetics, 10(7), 2275-2296. https://doi.org/10.1534/g3.120.401290
Kölle, M., Horta, M. A. C., Nowrousian, M., Ohm, R. A., Benz, J. P., & Pilgård, A. (2020). Degradative Capacity of Two Strains of Rhodonia placenta: From Phenotype to Genotype. Frontiers in Microbiology, 11, 1-15. [1338]. https://doi.org/10.3389/fmicb.2020.01338
Haridas, S., Albert, R., Binder, M., Bloem, J., LaButti, K., Salamov, A., Andreopoulos, B., Baker, S. E., Barry, K., Bills, G., Bluhm, B. H., Cannon, C., Castanera, R., Culley, D. E., Daum, C., Ezra, D., González, J. B., Henrissat, B., Kuo, A., ... Grigoriev, I. V. (2020). 101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens. Studies in Mycology, 96, 141-153. https://doi.org/10.1016/j.simyco.2020.01.003
Sonnenberg, A. S. M., Sedaghat-Telgerd, N., Lavrijssen, B., Ohm, R. A., Hendrickx, P. M., Scholtmeijer, K., Baars, J. J. P., & van Peer, A. (2020). Telomere-to-telomere assembled and centromere annotated genomes of the two main subspecies of the button mushroom Agaricus bisporus reveal especially polymorphic chromosome ends. Scientific Reports, 10(1), [14653]. https://doi.org/10.1038/s41598-020-71043-5
Miyauchi, S., Kiss, E., Kuo, A., Drula, E., Kohler, A., Sánchez-García, M., Morin, E., Andreopoulos, B., Barry, K. W., Bonito, G., Buée, M., Carver, A., Chen, C., Cichocki, N., Clum, A., Culley, D., Crous, P. W., Fauchery, L., Girlanda, M., ... Martin, F. M. (2020). Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits. Nature Communications, 11(1), [5125]. https://doi.org/10.1038/s41467-020-18795-w
Punt, M., van den Brule, T., Teertstra, W. R., Dijksterhuis, J., den Besten, H. M. W., Ohm, R. A., & Wösten, H. A. B. (2020). Impact of maturation and growth temperature on cell-size distribution, heat-resistance, compatible solute composition and transcription profiles of Penicillium roqueforti conidia. Food Research International, 136, 1-12. [109287]. https://doi.org/10.1016/j.foodres.2020.109287
2019
Scholarly publications
Sepčić, K., Sabotič, J., Ohm, R. A., Drobne, D., & Kokalj, A. J. (2019). First evidence of cholinesterase-like activity in Basidiomycota. PLoS One, 14(4), [0216077]. https://doi.org/10.1371/journal.pone.0216077
Jan Vonk, P., Escobar, N., Wösten, H. A. B., Lugones, L. G., & Ohm, R. A. (2019). High-throughput targeted gene deletion in the model mushroom Schizophyllum commune using pre-assembled Cas9 ribonucleoproteins. Scientific Reports, 9(1), 1-8. [7632]. https://doi.org/10.1038/s41598-019-44133-2
Varga, T., Krizsán, K., Földi, C., Dima, B., Sánchez-García, M., Sánchez-Ramírez, S., Szöllősi, G. J., Szarkándi, J. G., Papp, V., Albert, L., Andreopoulos, W., Angelini, C., Antonín, V., Barry, K. W., Bougher, N. L., Buchanan, P., Buyck, B., Bense, V., Catcheside, P., ... Nagy, L. G. (2019). Megaphylogeny resolves global patterns of mushroom evolution. Nature Ecology and Evolution, 3(4), 668-678. https://doi.org/10.1038/s41559-019-0834-1
Krizsán, K., Almási, É., Merényi, Z., Sahu, N., Virágh, M., Kószó, T., Mondo, S., Kiss, B., Bálint, B., Kües, U., Barry, K., Cseklye, J., Hegedüs, B., Henrissat, B., Johnson, J., Lipzen, A., Ohm, R. A., Nagy, I., Pangilinan, J., ... Nagy, L. G. (2019). Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi. Proceedings of the National Academy of Sciences of the United States of America, 116(15), 7409-7418. https://doi.org/10.1073/pnas.1817822116
Aerts, D., van den Bergh, S. G., Post, H., Altelaar, M. A. F., Arentshorst, M., Ram, A. F. J., Ohm, R. A., & Wösten, H. A. B. (2019). FlbA-Regulated Gene rpnR Is Involved in Stress Resistance and Impacts Protein Secretion when Aspergillus niger Is Grown on Xylose. Applied and Environmental Microbiology, 85(2), 1-12. [e02282-18]. https://doi.org/10.1128/AEM.02282-18
2018
Scholarly publications
Wu, B., Xu, Z., Knudson, A., Carlson, A., Chen, N., Kovaka, S., LaButti, K., Lipzen, A., Pennachio, C., Riley, R., Schakwitz, W., Umezawa, K., Ohm, R. A., Grigoriev, I. V., Nagy, L. G., Gibbons, J., & Hibbett, D. (2018). Genomics and Development of Lentinus tigrinus: A White-Rot Wood-Decaying Mushroom with Dimorphic Fruiting Bodies. Genome Biology and Evolution, 10(12), 3250-3261. https://doi.org/10.1093/gbe/evy246
Keizer, E. M., Escobar, N., Valdes, I. D., Ordonez, S. R., Ohm, R. A., Wösten, H. A. B., & Cock, H. (2018). Differential gene expression of Aspergillus fumigatus and Aspergillus niger interacting with epithelial lung cells. Medical Mycology, 56(Suppl 2), S17. https://doi.org/10.1093/mmy/myy036
Vos, A. M., Jurak, E., de Gijsel, P., Ohm, R. A., Henrissat, B., Lugones, L. G., Kabel, M. A., & Wösten, H. A. B. (2018). Production of α-1,3-L-arabinofuranosidase active on substituted xylan does not improve compost degradation by Agaricus bisporus. PLoS One, 13(7), 1-12. [e0201090]. https://doi.org/10.1371/journal.pone.0201090
Escobar, N., Valdes, I. D., Keizer, E. M., Ordonez, S. R., Ohm, R. A., Wösten, H. A. B., & de Cock, H. (2018). Expression profile analysis reveals that Aspergillus fumigatus but not Aspergillus niger makes type II epithelial lung cells less immunological alert. BMC Genomics, 19(1), 1-17. [534]. https://doi.org/10.1186/s12864-018-4895-3
Vonk, P. J., & Ohm, R. A. (2018). The role of homeodomain transcription factors in fungal development. Fungal Biology Reviews, 32(4), 219-230. https://doi.org/10.1016/j.fbr.2018.04.002
Martino, E., Morin, E., Grelet, G-A., Kuo, A., Kohler, A., Daghino, S., Barry, K. W., Cichocki, N., Clum, A., Dockter, R. B., Hainaut, M., Kuo, R. C., LaButti, K. M., Lindahl, B. D., Lindquist, E. A., Lipzen, A., Khouja, H-R., Magnuson, J., Murat, C., ... Perotto, S. (2018). Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists. New Phytologist, 217(3), 1213-1229. https://doi.org/10.1111/nph.14974
Lopez, D., Ribeiro, S., Label, P., Fumanal, B., Venisse, J-S., Kohler, A., de Oliveira, R. R., LaButti, K. M., Lipzen, A., Lail, K., Bauer, D., Ohm, R. A., Barry, K. W., Spatafora, J. W., Grigoriev, I. V., Martin, F. M., & Pujade-Renaud, V. (2018). Genome-Wide Analysis of Leaf Fall Disease Putative Effectors. Frontiers in Microbiology, 9. https://doi.org/10.3389/fmicb.2018.00276
Knapp, D. G., Németh, J. B., Barry, K., Hainaut, M., Henrissat, B., Johnson, J., Kuo, A., Lim, J. H. P., Lipzen, A., Nolan, M., Ohm, R. A., Tamás, L., Grigoriev, I. V., Spatafora, J. W., Nagy, L. G., & Kovács, G. M. (2018). Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi. Scientific Reports, 8(1), [6321]. https://doi.org/10.1038/s41598-018-24686-4
Gehrmann, T., Pelkmans, J. F., Ohm, R. A., Vos, A. M., Sonnenberg, A. S. M., Baars, J. J. P., Wösten, H. A. B., Reinders, M. J. T., & Abeel, T. (2018). Nucleus-specific expression in the multinuclear mushroom-forming fungus reveals different nuclear regulatory programs. Proceedings of the National Academy of Sciences of the United States of America, 115(17), 4429-4434. https://doi.org/10.1073/pnas.1721381115
2017
Scholarly publications
Uehling, J., Gryganskyi, A., Hameed, K., Tschaplinski, T., Misztal, P. K., Wu, S., Desirò, A., Vande Pol, N., Du, Z., Zienkiewicz, A., Zienkiewicz, K., Morin, E., Tisserant, E., Splivallo, R., Hainaut, M., Henrissat, B., Ohm, R., Kuo, A., Yan, J., ... Bonito, G. (2017). Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens. Environmental Microbiology, 19(8), 2964-2983. https://doi.org/10.1111/1462-2920.13669
De Bekker, C., Ohm, R. A., Evans, H. C., Brachmann, A., & Hughes, D. P. (2017). Ant-infecting Ophiocordyceps genomes reveal a high diversity of potential behavioral manipulation genes and a possible major role for enterotoxins. Scientific Reports, 7(1), [12508]. https://doi.org/10.1038/s41598-017-12863-w
Aerts, D., Hauer, E. E., Ohm, R. A., Arentshorst, M., Teertstra, W. R., Phippen, C., Ram, A. F. J., Frisvad, J. C., & Wösten, H. A. B. (2017). The FlbA-regulated predicted transcription factor Fum21 of Aspergillus niger is involved in fumonisin production. Antonie van Leeuwenhoek, 111, 311-322. https://doi.org/10.1007/s10482-017-0952-1
Triana, S., de Cock, H., Ohm, R. A., Danies, G., Wösten, H. A. B., Restrepo, S., González Barrios, A. F., & Celis Ramirez, A. (2017). Lipid Metabolic Versatility in Malassezia spp. Yeasts Studied through Metabolic Modeling. Frontiers in Microbiology, 8, 1-18. [1772]. https://doi.org/10.3389/fmicb.2017.01772
Teertstra, W. R., Tegelaar, M., Dijksterhuis, J., Golovina, E. A., Ohm, R. A., & Wösten, H. A. B. (2017). Maturation of conidia on conidiophores of Aspergillus niger. Fungal Genetics and Biology, 98, 61-70. https://doi.org/10.1016/j.fgb.2016.12.005
Stöckli, M., Lin, C-W., Sieber, R., Plaza, D. F., Ohm, R. A., & Künzler, M. (2017). Coprinopsis cinerea intracellular lactonases hydrolyze quorum sensing molecules of Gram-negative bacteria. Fungal Genetics and Biology, 102, 49-62. https://doi.org/10.1016/j.fgb.2016.07.009
2016
Scholarly publications
Peter, M., Kohler, A., Ohm, R. A., Kuo, A., Krützmann, J., Morin, E., Arend, M., Barry, K. W., Binder, M., Choi, C., Clum, A., Copeland, A., Grisel, N., Haridas, S., Kipfer, T., LaButti, K., Lindquist, E., Lipzen, A., Maire, R., ... Martin, F. M. (2016). Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum. Nature Communications [E], 7, [12662]. https://doi.org/10.1038/ncomms12662
Riley, R., Haridas, S., Wolfe, K. H., Lopes, M. R., Hittinger, C. T., Göker, M., Salamov, A. A., Wisecaver, J. H., Long, T. M., Calvey, C. H., Aerts, A. L., Barry, K. W., Choi, C., Clum, A., Coughlan, A. Y., Deshpande, S., Douglass, A. P., Hanson, S. J., Klenk, H-P., ... Jeffries, T. W. (2016). Comparative genomics of biotechnologically important yeasts. Proceedings of the National Academy of Sciences of the United States of America, 113(35), 9882-7. https://doi.org/10.1073/pnas.1603941113
Corrochano, L. M., Kuo, A., Marcet-Houben, M., Polaino, S., Salamov, A., Villalobos-Escobedo, J. M., Grimwood, J., Álvarez, M. I., Avalos, J., Bauer, D., Benito, E. P., Benoit, I., Burger, G., Camino, L. P., Cánovas, D., Cerdá-Olmedo, E., Cheng, J-F., Domínguez, A., Eliáš, M., ... Grigoriev, I. V. (2016). Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication. Current Biology, 26(12), 1577-84. https://doi.org/10.1016/j.cub.2016.04.038
Mosier, A. C., Miller, C. S., Frischkorn, K. R., Ohm, R. A., Li, Z., LaButti, K., Lapidus, A., Lipzen, A., Chen, C., Johnson, J., Lindquist, E. A., Pan, C., Hettich, R. L., Grigoriev, I. V., Singer, S. W., & Banfield, J. F. (2016). Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage. Frontiers in Microbiology, 7. https://doi.org/10.3389/fmicb.2016.00238
Nagy, L. G., Riley, R., Tritt, A., Adam, C., Daum, C., Floudas, D., Sun, H., Yadav, J. S., Pangilinan, J., Larsson, K-H., Matsuura, K., Barry, K., Labutti, K., Kuo, R., Ohm, R. A., Bhattacharya, S. S., Shirouzu, T., Yoshinaga, Y., Martin, F. M., ... Hibbett, D. S. (2016). Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities. Molecular Biology and Evolution, 33(4), 959-70. https://doi.org/10.1093/molbev/msv337
Sabotič, J., Ohm, R. A., & Künzler, M. (2016). Entomotoxic and nematotoxic lectins and protease inhibitors from fungal fruiting bodies. Applied Microbiology and Biotechnology, 100(1), 91-111. https://doi.org/10.1007/s00253-015-7075-2
2015
Scholarly publications
Floudas, D., Held, B. W., Riley, R., Nagy, L. G., Koehler, G., Ransdell, A. S., Younus, H., Chow, J., Chiniquy, J., Lipzen, A., Tritt, A., Sun, H., Haridas, S., LaButti, K. M., Ohm, R. A., Kües, U., Blanchette, R. A., Grigoriev, I. V., Minto, R. E., & Hibbett, D. S. (2015). Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii. Fungal Genetics and Biology, 76, 78-92. https://doi.org/10.1016/j.fgb.2015.02.002
Kohler, A., Kuo, A., Nagy, L. G., Morin, E., Barry, K. W., Buscot, F., Canbäck, B., Choi, C., Cichocki, N., Clum, A., Colpaert, J., Copeland, A., Costa, M. D., Doré, J., Floudas, D., Gay, G., Girlanda, M., Henrissat, B., Herrmann, S., ... Martin, F. (2015). Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists. Nature Genetics, 47(4), 410-415. https://doi.org/10.1038/ng.3223
Triana, S., González, A., Ohm, R. A., Wosten, H., de Cock, H., Restrepo, S., & Celis, A. (2015). Draft Genome Sequence of the Animal and Human Pathogen Malassezia pachydermatis Strain CBS 1879. Genome Announcements, 3(5), 1-2. [e01197-15]. https://doi.org/10.1128/genomeA.01197-15
Dhillon, B., Feau, N., Aerts, A. L., Beauseigle, S., Bernier, L., Copeland, A., Foster, A., Gill, N., Henrissat, B., Herath, P., LaButti, K. M., Levasseur, A., Lindquistb, E. A., Majoor, E., Ohm, R. A., Pangilinan, J. L., Pribowo, A., Saddler, J. N., Sakalidis, M. L., ... Hamelin, R. C. (2015). Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen. Proceedings of the National Academy of Sciences of the United States of America, 112(11), 3451-3456. https://doi.org/10.1073/pnas.1424293112
Chang, Y., Wang, S., Sekimoto, S., Aerts, A. L., Choi, C., Clum, A., LaButti, K. M., Lindquist, E. A., Yee Ngan, C., Ohm, R. A., Salamov, A. A., Grigoriev, I. V., Spatafora, J. W., & Berbee, M. L. (2015). Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants. Genome Biology and Evolution, 7(6), 1590-601. https://doi.org/10.1093/gbe/evv090
Kourist, R., Bracharz, F., Lorenzen, J., Kracht, O. N., Chovatia, M., Daum, C., Deshpande, S., Lipzen, A., Nolan, M., Ohm, R. A., Grigoriev, I. V., Sun, S., Heitman, J., Brück, T., & Nowrousian, M. (2015). Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems. MBio [E], 6(4), e00918. https://doi.org/10.1128/mBio.00918-15
de Bekker, C., Ohm, R. A., Loreto, R. G., Sebastian, A., Albert, I., Merrow, M., Brachmann, A., & Hughes, D. P. (2015). Gene expression during zombie ant biting behavior reflects the complexity underlying fungal parasitic behavioral manipulation. BMC Genomics, 16(1), 620. https://doi.org/10.1186/s12864-015-1812-x
2014
Scholarly publications
Nagy, L. G., Ohm, R. A., Kovács, G. M., Floudas, D., Riley, R., Gácser, A., Sipiczki, M., Davis, J. M., Doty, S. L., De Hoog, G. S., Lang, B. F., Spatafora, J. W., Martin, F. M., Grigoriev, I. V., & Hibbett, D. S. (2014). Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts. Nature Communications, 5, [4471]. https://doi.org/10.1038/ncomms5471
Todd, R. B., Zhou, M., Ohm, R. A., Leeggangers, H. A. C. F., Visser, L., & de Vries, R. P. (2014). Prevalence of transcription factors in ascomycete and basidiomycete fungi. BMC Genomics, 15(1), [214]. https://doi.org/10.1186/1471-2164-15-214
Ohm, R. A., Riley, R., Salamov, A., Min, B., Choi, I. G., & Grigoriev, I. V. (2014). Genomics of wood-degrading fungi. Fungal Genetics and Biology, 72, 82-90. https://doi.org/10.1016/j.fgb.2014.05.001
2013
Scholarly publications
Morin, E., Kohler, A., Baker, A. R., Foulongne-Oriol, M., Lombard, V., Nagy, L. G., Ohm, R. A., Patyshakuliyeva, A., Brun, A., Aerts, A. L., Bailey, A. M., Billette, C., Coutinho, P. M., Deakin, G., Doddapaneni, H., Floudas, D., Grimwood, J., Hildén, K., Kües, U., ... Martin, F. (2013). Erratum: Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche (Proceedings of the National Academy of Sciences of the United States of America (2012) 109 (17501-17506) DOI: 10.1073/pnas.1206847109). Proceedings of the National Academy of Sciences of the United States of America, 110(10), 4146. https://doi.org/10.1073/pnas.1300201110
Ohm, R. A., Aerts, D., Wösten, H. A. B., & Lugones, L. G. (2013). The blue light receptor complex WC-1/2 of Schizophyllum commune is involved in mushroom formation and protection against phototoxicity. Environmental Microbiology, 15(3), 943-955.
2012
Scholarly publications
Morin, E., Kohler, A., Baker, A. R., Foulogne-Oriol, M., Lombard, V., Nagy, L. G., Ohm, R. A., Patyshakuliyeva, A., Brun, A., Aerts, A. L., Billette, C., Coutinho, P. M., Deakin, G., Doddapaneni, H., Floudas, D., Grimwood, J., Hildén, K., Kües, U., Labutti, K. M., ... Martin, F. (2012). Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche. Proceedings of the National Academy of Sciences of the United States of America, 109, 17501-17506.
Floudas, D., Binder, M., Riley, R., Barry, K., Blanchette, R. A., Henrissat, B., Martinez, A. T., Otillar, R., Spatafora, J. W., Yadav, J. S., Aerts, A., Benoit, I., Boyd, A., Carlson, A., Copeland, A., Coutinho, P. M., de Vries, R. P., Ferreira, P., Findley, K., ... Hibbett, D. S. (2012). The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science, 336, 1715-1719.
Other output
Ohm, R. A., Aerts, D., Lugones, L. G., & Wösten, H. A. B. (2012). The WC1/WC2 complex is the fructification master switch in Schizophyllum commune. Abstract from The 18th Congress of the International Society for Mushroom Science, Beijng, China.
2011
Scholarly publications
Vinck, A., de Bekker, C., Ossin, A., Ohm, R. A., de Vries, R. P., & Woesten, H. A. B. (2011). Heterogenic expression of genes encoding secreted proteins at the periphery of Aspergillus niger colonies. Environmental Microbiology, 13(1), 216-225. https://doi.org/10.1111/j.1462-2920.2010.02322.x
Ohm, R. A., de Jong, J. F., de Bekker, A. M., Wösten, H. A. B., & Lugones, L. G. (2011). Transcription factor genes of Schizophyllum commune involved in regulation of mushroom formation. Molecular Microbiology, 81(6), 1433-1445. https://doi.org/10.1111/j.1365-2958
Vinck, A., de Bekker, A. M., Ossin, A., Ohm, R. A., de Vries, R. P., & Wösten, H. A. B. (2011). Heterogenic expression of genes encoding secreted proteins at the periphery of Aspergillus niger colones. Environmental Microbiology, 13(1), 216-225.
Other output
Ohm, R. A., de Jong, J. F., Lugones, L. G., & Wösten, H. A. B. (2011). Regulation of mushroom development. Abstract from 26th Fungal Genetics Conference Asilomar 2011, Asilomar, USA.
2010
Scholarly publications
Ohm, R. A., De Jong, J. F., Lugones, L. G., Aerts, A., Kothe, E., Stajich, J. E., De Vries, R. P., Record, E., Levasseur, A., Baker, S. E., Bartholomew, K. A., Coutinho, P. M., Erdmann, S., Fowler, T. J., Gathman, A. C., Lombard, V., Henrissat, B., Knabe, N., Kües, U., ... Wösten, H. A. B. (2010). Genome sequence of the model mushroom Schizophyllum commune. Nature Biotechnology, 28(9), 957-963. https://doi.org/10.1038/nbt.1643
Ohm, R. A., de Jong, J. F., Lugones, L. G., Aerts, A., Kothe, E., Stajich, J. E., de Vries, R. P., Record, E., Levasseur, A., Baker, S. E., Bartolomew, K. A., Coutinho, P. M., Erdmann, S., Fowler, T. J., Gathman, A. C., Lombard, V., Henrissat, B., Knabe, N., Kües, U., ... Wösten, H. A. B. (2010). Genome sequence of the model mushroom Schizophillum commune. Nature Biotechnology, 28(9), 957-963.
de Jong, J. F., Ohm, R. A., de Bekker, A. M., Wösten, H. A. B., & Lugones, L. G. (2010). Inactivation of ku80 in the mushroom-forming fungus Schizophyllum commune increases the relative incidence of homologous recombination. FEMS Microbiology Letters, 310(1), 91-95.
Ohm, R. A. (2010). Regulation of mushroom formation in Schizophyllum commune. [Doctoral thesis 1 (Research UU / Graduation UU), Utrecht University]. UU Universiteit Utrecht.
https://dspace.library.uu.nl/bitstream/handle/1874/192084/ohm.pdf?sequence=2
https://dspace.library.uu.nl/bitstream/handle/1874/192084/ohm.pdf?sequence=2
Ohm, R. A., de Jong, J. F., Berends, E., Wang, F., Wösten, H. A. B., & Lugones, L. G. (2010). An efficient gene deletion procedure for the mushroom-forming basidiomycete Schizophyllum commune. World Journal of Microbiology and Biotechnology.
Other output
Ohm, R. A., de Jong, J. F., Lugones, L. G., & Wösten, H. A. B. (2010). Regulatiors involved in mushroom formation. (Patent No. PCT/NL2010/050206).
Ohm, R. A., de Jong, J. F., Lugones, L. G., & Wösten, H. A. B. (2010). Genome of Schizophyllum commune yields insight into regulation of mushroom formation. Abstract from 10th European Conference on Fungal Genetics, Noordwijkerhout (NH Conference Center Leeuwenhorst).
Ohm, R. A., de Jong, J. F., Lugones, L. G., & Wösten, H. A. B. (2010). Genome of Schizophyllum commune yields insight into regulation of mushroom formation. Poster session presented at 10th European Conference on Fungal Genetics, Noordwijkerhout (NH Conference Center Leeuwenhorst).
2009
Scholarly publications
Coutinho, P. M., Anderson, P. M., Kolenova, K., Vankuyk, P. A., Benoit, I., Gruben, B. S., Trejo-Aguilar, B., Visser, H., van Solingen, P., Pakula, T., Seiboth, N. V., Battaglia, E., Aguilar-Osorio, G., de Jong, J. F., Ohm, R. A., Aguilar, M., Henrissat, B., Nielsen, J., Stalbrand, H., & de Vries, R. P. (2009). Post-genomic insights into the plant polysaccharide degradation potential of Aspergillus nidulans and comparison to Aspergillus niger and Aspergillus oryzae. Fungal Genetics and Biology, 46, S161-S169.
Berends, E., Ohm, R. A., de Jong, J. F., Rouwendal, G. J. A., Wösten, H. A. B., Lugones, L. G., & Bosch, D. (2009). Genomic and biochemical analysis of N glycosylation in the mushroom-forming basidiomycete Schizophyllum commune. Applied and Environmental Microbiology, 75(13), 4648-4652.
Other output
de Jong, J. F., Deelstra, H. J., Ohm, R. A., & Wösten, H. A. B. (2009). RNAi-based silencing in Fungi. O027. Abstract from Scientific Spring Meeting of the Dutch Society for Medical Microbiology and the Dutch Society for Microbiology, Arnhem.
2008
Other output
Ohm, R. A., Sharif, S. N., Huijzer, T. C. D., Quax, T. E. F., Leeuwen, J. G. E., de Jong, J. F., Wösten, H. A. B., & Lugones, L. G. (2008). Localization of gene expression in developmental stages of Schizophyllum commune using the fluorescent marker dTomato. Abstract from Genetics and Cell Biology of Basidiomycetes Conference VII, Cape Girardeau, MO.