Publications
2019
Scholarly publications
Domínguez Pardo, J. J., van Walree, C. A., Egmond, M. R., Koorengevel, M. C., & Killian, J. A. (2019).
Nanodiscs bounded by styrene-maleic acid allow trans-cis isomerization of enclosed photoswitches of azobenzene labeled lipids.
Chemistry and Physics of Lipids,
220, 1-5.
https://doi.org/10.1016/j.chemphyslip.2019.02.002 Van Willigen, M., Vonk, A. M., Yeoh, H. Y., Kruisselbrink, E.
, Kleizen, B., Van Der Ent, C. K.
, Egmond, M. R., De Jonge, H. R.
, Braakman, I., Beekman, J. M.
, & Van Der Sluijs, P. (2019).
Folding-function relationship of the most common cystic fibrosis-causing CFTR conductance mutants.
Life Science Alliance,
2(1), [e201800172].
https://doi.org/10.26508/lsa.201800172 Schildknegt, D., Lodder, N., Pandey, A., Egmond, M., Pena, F.
, Braakman, I., & van der Sluijs, P. (2019).
Characterization of CNPY5 and its family members.
Protein Science,
28(7), 1276-1289.
https://doi.org/10.1002/pro.3635 2018
Scholarly publications
Liu, Y., Moura, E. C. C. M.
, Dörr, J. M., Scheidelaar, S., Heger, M., Egmond, M. R., Killian, J. A., Mohammadi, T., & Breukink, E. (2018).
Correction: Bacillus subtilis MraY in detergent-free system of nanodiscs wrapped by styrene-maleic acid copolymers.
PLoS One,
13(12), e0210135.
https://doi.org/10.1371/journal.pone.0210135 Liu, Y., Moura, E. C. C. M.
, Dörr, J. M., Scheidelaar, S., Heger, M., Egmond, M. R., Killian, J. A., Mohammadi, T., & Breukink, E. (2018).
Bacillus subtilis MraY in detergent-free system of nanodiscs wrapped by styrene-maleic acid copolymers.
PLoS One,
13(11), [e0206692].
https://doi.org/10.1371/journal.pone.0206692 2017
Scholarly publications
Reiniers, M. J., van Golen, R. F., Bonnet, S.
, Broekgaarden, M., van Gulik, T. M.
, Egmond, M. R., & Heger, M. (2017).
Preparation and Practical Applications of 2',7'-Dichlorodihydrofluorescein in Redox Assays.
Analytical Chemistry,
89(7), 3853-3857.
https://doi.org/10.1021/acs.analchem.7b00043 Broekgaarden, M., Weijer, R., van Wijk, A. C.
, Cox, R. C., Egmond, M. R., Hoebe, R., van Gulik, T. M.
, & Heger, M. (2017).
Photodynamic Therapy with Liposomal Zinc Phthalocyanine and Tirapazamine Increases Tumor Cell Death via DNA Damage.
Journal of Biomedical Nanotechnology,
13(2), 204-220.
https://doi.org/10.1166/jbn.2017.2327 2016
Scholarly publications
Liu, Y., Garcia Lopes Maia Rodrigues, J., Bonvin, A. M. J. J., Zaal, E. A., Berkers, C. R., Heger, M., Gawarecka, K., Swiezewska, E.
, Breukink, E., & Egmond, M. R. (2016).
New insight into the catalytic mechanism of bacterial mray from enzyme kinetics and docking studies.
Journal of Biological Chemistry,
291(29), 15057-15068.
https://doi.org/10.1074/jbc.M116.717884 2015
Scholarly publications
Spelbrink, R. E. J., Lensing, H.
, Egmond, M. R., & Giuseppin, M. L. F. (2015).
Potato Patatin Generates Short-Chain Fatty Acids from Milk Fat that Contribute to Flavour Development in Cheese Ripening.
Applied Biochemistry and Biotechnology,
176(1), 231-43.
https://doi.org/10.1007/s12010-015-1569-32013
Scholarly publications
Teixeira, A., Cox, R. C., & Egmond, M. R. (2013).
Furan fatty acids efficiently rescue brain cells from cell death induced by oxidative stress.
Food & function,
4(8), 1209-1215.
https://doi.org/10.1039/C3FO60094G 2012
Scholarly publications
Wieczorek, B., Snelders, D. J. M., Dijkstra, H. P., Versluis, C., Lutz, M., Spek, A. L., Egmond, M. R., Klein Gebbink, R. J. M., & van Koten, G. (2012).
Coordination Chemistry in Water of a Free and a Lipase-Embedded Cationic NCN-Pincer Platinum Center with Neutral and Ionic Triarylphosphines.
Organometallics,
31, 2810-2820.
https://doi.org/10.1021/om2010832 2011
Scholarly publications
Wieczorek, B., Träff, A., Krumlinde, P.
, Dijkstra, H. P., Egmond, M. R., van Koten, G., Bäckvall, J-E.
, & Klein Gebbink, R. J. M. (2011).
Covalent anchoring of a racemization catalyst to CALB-beads: towards dual immobilization of DKR catalysts.
Tetrahedron Letters,
52(14), 1601-1604.
https://doi.org/10.1016/j.tetlet.2011.01.106 van der Poel, S., Wolthoorn, J., van den Heuvel, D.
, Egmond, M. R., Groux-Degroote, S.
, Neumann, S., Gerritsen, H. C., van Meer, G., & Sprong, H. (2011).
Hyperacidification of trans-Golgi network and endo/lysosomes in melanocytes by glucosylceramide-dependent V-ATPase activity.
Traffic,
12(11), 1634-1647.
https://doi.org/10.1111/j.1600-0854.2011.01263.x 2010
Scholarly publications
van Kampen, M. D., Rosenstein, R., Götz, F.
, & Egmond, M. R. (2010).
Cloning, purification and characterisation of Staphylococcus warneri lipase 2.
Biochimica Et Biophysica Acta. Protein Structure And Molecular Enzymology,
1544(1-2), 229-241.
https://doi.org/10.1016/S0167-4838(00)00224-7Wieczorek, B., Lemcke, B.
, Dijkstra, H. P., Egmond, M. R., Klein Gebbink, R. J. M., & van Koten, G. (2010).
Site-selective ser-hydrolase labelling with a luminescent organometallic NCN-platinum complex.
European Journal of Inorganic Chemistry,
13, 1929-1938.
https://doi.org/10.1002/ejic.200900980 Snijder, H. J., Kingma, R. L., Kalk, K. H., Dekker, N.
, Egmond, M. R., & Dijkstra, B. W. (2010).
Structural investigations of calcium binding and its role in activity and activation of outer membrane phospholipase A from Escherichia coli.
Journal of Molecular Biology,
309(2), 477-489.
https://doi.org/10.1006/jmbi.2001.4675Rodenbrock, A., Selber, K.
, Egmond, M. R., & Kula, M-R. (2010).
Extraction of peptide tagged cutinase in detergent-based aqueous two-phase systems.
Bioseparation,
9(5), 269-276.
https://doi.org/10.1023/A:1011190713820Kramer, R. A., Zandwijken, D., Cox, R. C., Egmond, M. R., & Dekker, N. (2010). Fluorescent substrates for the endoprotease OmpT. In R. Epton (Ed.), Innovation and perspectives in solid phase synthesis & combinatorial libraries 2000 : peptides, proteins and nucleic acids : small molecule organic chemical diversity : collected papers, Sixth International Symposium, York, England, UK (pp. 301-304). Mayflower Wordwide.
Grönroos, J. O., Laine, V. J. O., Janssen, M. J. W.
, Egmond, M. R., & Nevalainen, T. J. (2010).
Bactericidal properties of group IIA and group V phospholipases A2.
Journal of Immunology,
166, 4029-4034.
https://doi.org/10.4049/jimmunol.166.6.40292009
Scholarly publications
Rutten, L., Wieczorek, B., Mannie, J-PBA., Kruithof, C. A., Dijkstra, H. P., Egmond, M. R., Lutz, M., Klein Gebbink, R. J. M., Gros, P., & van Koten, G. (2009). Solid-state structural characterization of cutinase-ECE-pincer-metal hybrids. Chemistry-A European Journal, 15(17), 4270-4280.
Wieczorek, B., Dijkstra, H. P., Egmond, M. R., Klein Gebbink, R. J. M., & van Koten, G. (2009).
Incorporating ECE-pincer metal complexes as functional building blocks in semisynthetic metalloenzymes, supramolecular polypeptide hybrids, tamoxifen derivatives, biomarkers and sensors.
Journal of Organometallic Chemistry,
694(6), 812-822.
http://www.elsevier.com Rutten, L., Mannie, J-PBA., Stead, C. M., Raetz, C. R. H., Reynolds, C. M.
, Bonvin, A. M. J. J., Tommassen, J. P. M., Egmond, M. R., Trent, M. S.
, & Gros, P. (2009).
Active-site architecture and catalytic mechanism of the lipid A deacylase LpxR of Salmonella typhimurium.
Proceedings of the National Academy of Sciences of the United States of America,
106(6), 1960-1964.
https://doi.org/10.1073/pnas.0813064106https://dspace.library.uu.nl/bitstream/handle/1874/42725/1960.full.pdf?sequence=1 Tsaytler, P. A., Krijgsveld, J., Goerdayal, S. S., Rüdiger, S., & Egmond, M. R. (2009). Novel Hsp90 partners discovered using complementary proteomic approaches. Cell Stress & Chaperones, (14), 629-638.
2008
Scholarly publications
Kruithof, C. A., Dijkstra, H. P., Lutz, M., Spek, A. L., Egmond, M. R., Klein Gebbink, R. J. M., & van Koten, G. (2008).
Non-tethered organometallic phosphonate inhibitors for lipase inhibition: positioning of the metal center in the active site of cutinase.
European Journal of Inorganic Chemistry,
2008(28), 4425-4432.
https://dspace.library.uu.nl/bitstream/handle/1874/33216/790.pdf?sequence=1 Tsaytler, P. A., O'Flaherty, M. C., Sakharov, D. V., Krijgsveld, J., & Egmond, M. R. (2008).
Immediate protein targets of photodynamic treatment in carcinoma cells.
Journal of Proteome Research,
7(9), 3868-3878.
https://dspace.library.uu.nl/bitstream/handle/1874/32610/14.%2520Tsaytler%25202008%2520pp%25203868-78.pdf?sequence=1 Neumann, S., Opacic, M.
, Wechselberger, R. W., Sprong, H., & Egmond, M. R. (2008).
Glycolipid transfer protein: clear structure and activity, but enigmatic function.
Advances in Enzyme Regulation,
48(1), 137-151.
https://dspace.library.uu.nl/bitstream/handle/1874/33242/534.pdf?sequence=1 2007
Scholarly publications
Dijkstra, H. P., Sprong, H., Aerts, B. N. H., Kruithof, C. A., Egmond, M. R., & Klein Gebbink, R. J. M. (2007). Selective and diagnostic labelling of serine hydrolases with reactive phosphonate inhibitors. Organic & Biomolecular Chemistry, 6, 523-531.
2006
Scholarly publications
van Meer, G., Egmond, M. R., & Halter, D. (2006). Sphingolipids and multidrug resistance of cancer cells. In Y. Hirabayashi, Y. Igarashi, & A. H. Merrill jr. (Eds.), Sphingolipid Biology (pp. 263-270). Springer.
van Meer, G., Halter, D., Sprong, H., Somerharju, P.
, & Egmond, M. R. (2006).
ABC lipid transporters: extruders, flippases, or flopless activators? FEBS Letters,
580, 1171-1177.
https://dspace.library.uu.nl/bitstream/handle/1874/19996/15.%2520van%2520Meer%25202006%2520pp1171-77.pdf?sequence=1 Wierenga, P. A., Kosters, H.
, Egmond, M. R., Voragen, A. G. J., & Jongh, H. H. J. (2006).
Importance of physical vs. chemical interactions in surface shear rheology.
Advances in Colloid and Interface Science,
119, 131-139.
https://dspace.library.uu.nl/bitstream/handle/1874/19998/17.Wierenga%25202006%2520pp%2520131-39.pdf?sequence=1Rutten, L., Geurtsen, J. J. G., Lambert, W., Smolenaers, J. J. M.
, Bonvin, A. M., de Haan, A., van der Ley, P.
, Egmond, M. R., Gros, P., & Tommassen, J. P. M. (2006).
Crystal structure and catalytic mechanism of the LPS 3-O-deacylase PagL from Pseudomonas aeruginosa.
Proceedings of the National Academy of Sciences of the United States of America,
103, 7071-7076.
https://doi.org/10.1073/pnas.0509392103 2005
Scholarly publications
Kruithof, C. A., Casado Lacabra, M. A., Guillena, G., Egmond, M. R., van der Kerk-van Hoof, A. C., Heck, A. J. R., Klein Gebbink, R. J. M., & van Koten, G. (2005). Lipase Active-Site-Directed Anchoring of Organometallics:Metallopincer/Protein Hybrids. Chemistry-A European Journal, 11, 6869-6877.
Brandenburg, K., Garidel, P., Schromm, A. B., Andra, J.
, Egmond, M., & Wiese, A. (2005).
Investigation into the interaction of the bacterial protease OmpT with outer membrane lipids and biological activity of OmpT:lipopolysaccharide complexes.
European biophysics journal,
34, 28-41.
https://dspace.library.uu.nl/bitstream/handle/1874/7920/2.Brandenburg%25202005%2520pp28-41.pdf?sequence=2Wierenga, P. A., Meinders, M. J. B.
, Egmond, M. R., Voragen, A. G. J., & de Jongh, H. H. J. (2005).
Quantitative description of the relation between protein net charge and protein adsorption to air-water interfaces.
Journal of Physical Chemistry. B,
109, 16946-16952.
https://dspace.library.uu.nl/bitstream/handle/1874/14759/12.Wierenga%25202005%2520pp%252016946-16952.pdf?sequence=12004
Scholarly publications
2003
Scholarly publications
Guillena Townley, G.
, Kruithof, C. A., Casado Lacabra, M. A.
, Egmond, M. R., & van Koten, G. (2003).
The Suzuki cross-coupling reaction: a powerful tool for the attachment of organometallic 'NCN'-pincer units to biological scaffolds.
Journal of Organometallic Chemistry,
668, 3-7.
https://dspace.library.uu.nl/bitstream/handle/1874/14486/14.Guillena%25202003%2520pp3-7.pdf?sequence=1Nieuwenhuizen, W. F., van Leeuwen, S., Jack, R. W.
, Egmond, M. R., & Götz, F. (2003).
Molecular cloning and characterization of the alkaline ceramidase from Pseudomonas aeruginosa PA01.
Tijdschrift: tijdelijk onbekend,
30, 94-104.
https://dspace.library.uu.nl/bitstream/handle/1874/14379/5.Nieuwenhuzen2003%2520pp94-104.pdf?sequence=1Wierenga, P. A., Meinders, M. B.
, Egmond, M. R., Voragen, A. G. J., & de Jongh, H. H. J. (2003).
Protein exposed hydrophobicity reduces the kinetic barrier of adsorption of ovalbumin to the air-water interface.
Langmuir,
19, 8964-8970.
https://dspace.library.uu.nl/bitstream/handle/1874/14948/12.Wierenga2003%2520pp8964-70.pdf?sequence=1Other output
Nieuwenhuizen, W. F., Egmond, M. R., van der Wilden, W., & Oudenaarde, I. (2003). Use of a sphingoid base for inhibiting ceramidase activity. (Patent No. EP 1287815 A1 200303).
2002
Scholarly publications
Nilsson, A., Johansson, H-O., Mannesse, M., Egmond, M. R., & Tjerneld, F. (2002). Partitioning of peptide-tagged proteins in aqueous two-phase systems using hydrophobically modified micelle-forming thermoseparating polymer. Biochimica et Biophysica Acta, 1601, 138-148.
Kramer, R. A., Brandenburg, K.
, Vandeputte-Rutten, L., Werkhoven, M.
, Gros, P., Dekker, N.
, & Egmond, M. R. (2002).
Lipopolysaccharide regions involved in the activation of Escherichia coli outer membrane protease OmpT.
European Journal of Biochemistry,
269, 1746-1752.
https://dspace.library.uu.nl/bitstream/handle/1874/14272/9.Kramer2002%2520pp1746-52.pdf?sequence=1Calado, C. R. C., Mannesse, M. L. M.
, Egmond, M. R., Cabral, J. M. S., & Fonseca, L. P. (2002).
Production of wild-type and peptide fusion cutinases by recombinant Saccharomyces cerevisiae MM01 strains.
Tijdschrift: tijdelijk onbekend,
78(6), 692-698.
https://dspace.library.uu.nl/bitstream/handle/1874/14270/2.Calado%25202002pp%2520692-8.pdf?sequence=1Kooter, I. M., Steiner, R. A., Dijkstra, B. W., Noort, P. I.
, & Egmond, M. R. (2002).
EPR characterisation of the mononuclear Cu-containing Aspergillus japonicus quercetin 2,3-dioxygenase reveals dramatic changes upon anaerobic binding of substrates.
European Journal of Biochemistry,
269, 2971-2979.
https://dspace.library.uu.nl/bitstream/handle/1874/26003/8.Kooter%25202002%2520pp%25202971-9.pdf?sequence=1Kingma, R. L., Snijder, H. J., Dijkstra, B. W., Dekker, N.
, & Egmond, M. R. (2002).
Functional importance of calcium binding sites in outer membrane phospholipase A.
Biochimica et Biophysica Acta,
1561, 230-237.
https://dspace.library.uu.nl/bitstream/handle/1874/14271/6.Kingma2002%2520pp230-37.pdf?sequence=1Professional publications
Fusetti, F., Schröter, K. H., Steiner, R. A., Noort, P. I., Pijning, T., Rozeboom, H. J., Kalk, K. H.
, Egmond, M. R., & Dijkstra, B. W. (2002).
Crystal structure of the copper-containing quercetin 2,3-dioxygenase from Aspergillus japonicus.
Structure,
10, 259-268.
https://dspace.library.uu.nl/bitstream/handle/1874/14262/3.Fusetti2002%2520pp259-68.pdf?sequence=12001
Scholarly publications
Snijder, H. J., van Eerde, J. H., Kalk, K. H., Dekker, N.
, Egmond, M. R., & Dijkstra, B. W. (2001).
Structural investigations of the active-site mutant Asn156Ala of outer membrane phospholipase A: Function of the Asn-His interaction in the catalytic triad.
Protein Science,
10(10), 1962-1969.
https://doi.org/10.1110/ps.17701Vandeputte-Rutten, L., Kramer, R. A., Kroon, J., Dekker, N., Egmond, M. R., & Gros, P. (2001). Crystal structure of the outer membrane protease OmpT from Escherichia coli suggests a novel catalytic site EMBO Journal. EMBO Journal, 20, 5033-5039.
Kramer, R. A., Vandeputte-Rutten, L., de Roon, G. J., Gros, P., Dekker, N., & Egmond, M. R. (2001). Identification of essential acidic residues of outer membrane protease OmpT supports a novel active site. FEBS Letters, 505, 426-430.
Hirschberg, J. H. B. H., Simons, J. F. A., Dekker, N., & Egmond, M. R. (2001). Cloning, expression, purification and characterization of patatin, a novel phospholipase A. European Journal of Biochemistry, 268, 5037-5044.
Dekker, N.
, Cox, R. C., Kramer, R. A.
, & Egmond, M. R. (2001).
Substrate specificity of the integral membrane protease OmpT determined by spatially addressed peptide libraries.
Biochemistry,
40(6), 1694-1701.
https://doi.org/10.1021/bi00141951973
Scholarly publications
Egmond, M. R., Veldink, G. A., Vliegenthart, J. F. G., & Boldingh, J. (1973).
C 11 H abstraction from linoleic acid, the rate limiting step in lipoxygenase catalysis.
Biochemical and Biophysical Research Communications,
54(3), 1178-1184.
https://doi.org/10.1016/0006-291X(73)90816-4