Dr. M.F. (Matti) Pronker

Dr. M.F. (Matti) Pronker

Researcher
Biomol.Mass Spectrometry & Proteom.
m.f.pronker@uu.nl

Publications

2024

Scholarly publications

Beugelink, J. W., Sweep, E., Janssen, B. J. C., Snijder, J., & Pronker, M. F. (2024, Mar 28). Structural basis for recognition of the FLAG-tag by anti-FLAG M2. Manuscript in preparation. https://doi.org/10.1101/2024.03.25.586599
Peng, W., Giesbers, K., Siborova, M., Beugelink, W., Pronker, M., Schulte, D., Hilkens, J., Janssen, B., Strijbis, K., & Snijder, J. (2024). Reverse-engineering the anti-MUC1 antibody 139H2 by mass spectrometry–based de novo sequencing. Life Science Alliance, 7(6), Article 202302366. https://doi.org/10.26508/lsa.202302366
Zou, Y., Pronker, M. F., Damen, J. M. A., Heck, A. J. R., & Reiding, K. R. (2024). Genotype-dependent N-glycosylation and newly exposed O-glycosylation affect plasmin-induced cleavage of histidine-rich glycoprotein (HRG). Journal of Biological Chemistry, 300(3), Article 105683. https://doi.org/10.1016/j.jbc.2024.105683
https://dspace.library.uu.nl/bitstream/handle/1874/437166/1-s2.0-S0021925824000590-main.pdf?sequence=1
van de Wakker, S. I., Bauzá-Martinez, J., Ríos Arceo, C., Manjikian, H., Snijders Blok, C. J. B., Roefs, M. T., Willms, E., Maas, R. G. C., Pronker, M. F., de Jong, O. G., Wu, W., Görgens, A., El Andaloussi, S., Sluijter, J. P. G., & Vader, P. (2024). Size matters: Functional differences of small extracellular vesicle subpopulations in cardiac repair responses. Journal of Extracellular Vesicles, 13(1), e12396. Article 12396. https://doi.org/10.1002/jev2.12396

2023

Scholarly publications

Peng, W., Giesbers, K. C. A. P., Šiborová, M., Beugelink, J. W., Pronker, M. F., Schulte, D., Hilkens, J., Janssen, B. J. C., Strijbis, K., & Snijder, J. (2023). Reverse engineering the anti-MUC1 hybridoma antibody 139H2 by mass spectrometry-based de novo sequencing. bioRxiv. https://doi.org/10.1101/2023.07.05.547778
https://dspace.library.uu.nl/bitstream/handle/1874/436026/2023.07.05.547778v1.full.pdf?sequence=1
Pronker, M. F., Creutznacher, R., Drulyte, I., Hulswit, R. J. G., Li, Z., van Kuppeveld, F. J. M., Snijder, J., Lang, Y., Bosch, B.-J., Boons, G.-J., Frank, M., de Groot, R. J., & Hurdiss, D. L. (2023). Sialoglycan binding triggers spike opening in a human coronavirus. Nature, 624(7990), 201-206. https://doi.org/10.1038/s41586-023-06599-z
https://dspace.library.uu.nl/bitstream/handle/1874/434377/s41586-023-06599-z.pdf?sequence=1
Zou, Y., van Breukelen, B., Pronker, M., Reiding, K., & Heck, A. J. R. (2023). Proteogenomic Features of the Highly Polymorphic Histidine-rich Glycoprotein Arose Late in Evolution. Molecular and Cellular Proteomics, 22(7), Article 100585. https://doi.org/10.1016/j.mcpro.2023.100585

2022

Scholarly publications

Peng, W., Rayaprolu, V., Parvate, A. D., Pronker, M. F., Hui, S., Parekh, D., Shaffer, K., Yu, X., Saphire, E. O., & Snijder, J. (2022). Glycan shield of the ebolavirus envelope glycoprotein GP. Communications Biology, 5(1), 1-11. Article 785. https://doi.org/10.1038/s42003-022-03767-1
Bauzá-Martinez, J., Armony, G., Pronker, M. F., & Wu, W. (2022). Characterization of protein complexes in extracellular vesicles by intact extracellular vesicle crosslinking mass spectrometry (iEVXL). Journal of Extracellular Vesicles, 11(8), 1-15. Article e12245. https://doi.org/10.1002/jev2.12245

2021

Scholarly publications

Peng, W., Pronker, M. F., & Snijder, J. (2021). Mass Spectrometry-Based De Novo Sequencing of Monoclonal Antibodies Using Multiple Proteases and a Dual Fragmentation Scheme. Journal of Proteome Research, 20(7), 3559-3566. https://doi.org/10.1021/acs.jproteome.1c00169
Hevler, J. F., Lukassen, M. V., Cabrera-Orefice, A., Arnold, S., Pronker, M. F., Franc, V., & Heck, A. J. R. (2021). Selective cross-linking of coinciding protein assemblies by in-gel cross-linking mass spectrometry. EMBO Journal, 40(4), 1-16. Article e106174. https://doi.org/10.15252/embj.2020106174

2020

Scholarly publications

Hurdiss, D. L., Drulyte, I., Lang, Y., Shamorkina, T. M., Pronker, M. F., van Kuppeveld, F. J. M., Snijder, J., & de Groot, R. J. (2020). Cryo-EM structure of coronavirus-HKU1 haemagglutinin esterase reveals architectural changes arising from prolonged circulation in humans. Nature Communications, 11(1), 1-10. Article 4646. https://doi.org/10.1038/s41467-020-18440-6

2019

Scholarly publications

Pronker, M. F., Van Den Hoek, H., & Janssen, B. J. C. (2019). Design and structural characterisation of olfactomedin-1 variants as tools for functional studies. BMC Molecular and Cell Biology, 20, Article 50. https://doi.org/10.1186/s12860-019-0232-1

2017

Scholarly publications

Pronker, M. F., Tas, R. P., Vlieg, H. C., & Janssen, B. J. C. (2017). Nogo Receptor crystal structures with a native disulfide pattern suggest a novel mode of self-interaction. Acta Crystallographica Section D Structural Biology, 73(11), 860-876. https://doi.org/10.1107/S2059798317013791
Pronker, M. F. (2017). On the Myelin-Axon Interaction: Structural Studies of Myelin-Associated Glycoprotein, Olfactomedin-1 and the Nogo Receptor. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Utrecht University.
https://dspace.library.uu.nl/bitstream/handle/1874/348467/Pronker.pdf?sequence=1

2016

Scholarly publications

Pronker, M. F., Lemstra, S., Snijder, J., Heck, A. J. R., Thies - Weesie, D., Pasterkamp, R. J., & Janssen, B. J. C. (2016). Structural basis of myelin-associated glycoprotein adhesion and signalling. Nature Communications, 7, 1-13. Article 13584. https://doi.org/10.1038/ncomms13584

2015

Scholarly publications

Pronker, M. F., Bos, T. G. A. A., Sharp, T. H., Thies-Weesie, D. M. E., & Janssen, B. J. C. (2015). Olfactomedin-1 has a V-shaped disulfide-linked tetrameric structure. Journal of Biological Chemistry, 290(24), 15092-15101. https://doi.org/10.1074/jbc.M115.653485