Full publication record can be found at ORCID, SCOPUS, Google Scholar and WoS sites.
Besides journal articles, I have also published two open access text books:
Thermodynamics and equilibria in Earth System Sciences: An introduction
Marine Carbon Biogeochemistry. A primer for Earth System Scientists
The latter book contains a few typos. Corrections are listed in:Corrections to Marine Carbon Biogeochemistry by Jack Middelburg Dec 2019.pdf
Publications
2024
Scholarly publications
Liu, M., Raymond, P. A., Lauerwald, R., Zhang, Q., Trapp-Müller, G., Davis, K. L., Moosdorf, N., Xiao, C., Middelburg, J. J., Bouwman, A. F., Beusen, A. H. W., Peng, C., Lacroix, F., Tian, H., Wang, J., Li, M., Zhu, Q., Cohen, S., van Hoek, W. J., ... Regnier, P. (2024). Global riverine land-to-ocean carbon export constrained by observations and multi-model assessment. Nature Geoscience, 17, 896-904. https://doi.org/10.1038/s41561-024-01524-z
Wang, J., Bouwman, A. F., Vilmin, L., Beusen, A. H. W., van Hoek, W. J., Liu, X., & Middelburg, J. J. (2024). Global inland-water nitrogen cycling has accelerated in the Anthropocene. Nature Water, 2(8), 729-740. https://doi.org/10.1038/s44221-024-00282-x
Wang, C., Qiu, Y., Hao, Z., Wang, J., Zhang, C., Middelburg, J. J., Wang, Y., & Zou, X. (2024). Global patterns of organic carbon transfer and accumulation across the land–ocean continuum constrained by radiocarbon data. Nature Geoscience, 17(8), 778-786. https://doi.org/10.1038/s41561-024-01476-4
Zhu, QZ., Yin, X., Taubner, H., Wendt, J., Friedrich, MW., Elvert, M., Hinrichs, KU., & Middelburg, JJ. (2024). Secondary production and priming reshape the organic matter composition in marine sediments. Science advances, 10(20), 1-10. Article eadm8096. https://doi.org/10.1126/sciadv.adm8096
Filbee-Dexter, K., Pessarrodona, A., Pedersen, M. F., Wernberg, T., Duarte, C. M., Assis, J., Bekkby, T., Burrows, M. T., Carlson, D. F., Gattuso, J. P., Gundersen, H., Hancke, K., Krumhansl, K. A., Kuwae, T., Middelburg, J. J., Moore, P. J., Queirós, A. M., Smale, D. A., Sousa-Pinto, I., ... Krause-Jensen, D. (2024). Carbon export from seaweed forests to deep ocean sinks. Nature Geoscience, 17(6), 552-559. https://doi.org/10.1038/s41561-024-01449-7
Middelburg, J. J. (2024). Thermodynamics and Equilibria in Earth System Sciences: An Introduction. (SpringerBriefs in Earth System Sciences). Springer Nature. https://doi.org/10.1007/978-3-031-53407-2
Wu, Z., Yu, D., Yu, Q., Liu, Q., Zhang, M., Dahlgren, R. A., Middelburg, J. J., Qu, L., Li, Q., Guo, W., & Chen, N. (2024). Greenhouse gas emissions (CO2–CH4–N2O) along a large reservoir‐downstream river continuum: The role of seasonal hypoxia. Limnology and Oceanography, 69(5), 1015-1029. https://doi.org/10.1002/lno.12544
van de Mortel, H., Delaigue, L., Humphreys, M. P., Middelburg, J. J., Ossebaar, S., Bakker, K., Trabucho Alexandre, J. P., van Leeuwen ‐ Tolboom, A. W. E., Wolthers, M., & Sulpis, O. (2024). Laboratory Observation of the Buffering Effect of Aragonite Dissolution at the Seafloor. Journal of Geophysical Research: Biogeosciences, 129(2), Article e2023JG007581. https://doi.org/10.1029/2023JG007581
Wang, J., Liu, X., & Middelburg, J. J. (2024). Inland Waters Are Not Exempt from the Human-Driven Multidecadal Increases in Greenhouse Gas Emissions. ACS ES&T Water, 4(1), 5-7. https://doi.org/10.1021/acsestwater.3c00729
2023
Scholarly publications
Geerlings, N. M. J., Middelburg, J. J., Polerecky, L., & Meysman, F. J. R. (2023). Cable Bacteria Get Energy Through Electrical Teamwork. Frontiers for Young Minds, 11, 1-8. Article 978226. https://doi.org/10.3389/frym.2023.978226
https://dspace.library.uu.nl/bitstream/handle/1874/434950/frym-11-978226.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/434950/frym-11-978226.pdf?sequence=1
Wang, J., Liu, X., Beusen, A. H. W., & Middelburg, J. J. (2023). Surface-Water Nitrate Exposure to World Populations Has Expanded and Intensified during 1970–2010. Environmental Science & Technology, 57(48), 19395-19406. https://doi.org/10.1021/acs.est.3c06150
https://dspace.library.uu.nl/bitstream/handle/1874/434645/wang-et-al-2023-surface-water-nitrate-exposure-to-world-populations-has-expanded-and-intensified-during-1970-2010.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/434645/wang-et-al-2023-surface-water-nitrate-exposure-to-world-populations-has-expanded-and-intensified-during-1970-2010.pdf?sequence=1
Wang, J., Vilmin, L., Mogollón, J. M., Beusen, A., van Hoek, W. J., Liu, X., Pika, P. A., Middelburg, J. J., & Bouwman, A. F. (2023). Inland Waters Increasingly Produce and Emit Nitrous Oxide. Environmental Science & Technology, 57(36), 13506-13519. https://doi.org/10.1021/acs.est.3c04230
Sulpis, O., Trossman, D. S., Holzer, M., Jeansson, E., Lauvset, S. K., & Middelburg, J. J. (2023). Respiration Patterns in the Dark Ocean. Global Biogeochemical Cycles, 37(8), Article e2023GB007747. https://doi.org/10.1029/2023GB007747
Sulpis, O., & Middelburg, J. J. (2023). Inorganic blue carbon sequestration. Nature Sustainability, 6(9), 1039-1040. https://doi.org/10.1038/s41893-023-01143-3
Stuart-Lee, A. E., Mortensen, J., Juul-Pedersen, T., Middelburg, J. J., Soetaert, K., Hopwood, M. J., Engel, A., & Meire, L. (2023). Influence of glacier type on bloom phenology in two Southwest Greenland fjords. Estuarine, Coastal and Shelf Science, 284, Article 108271. https://doi.org/10.1016/j.ecss.2023.108271
Cramwinckel, M. J., van der Ploeg, R., van Helmond, N. A. G. M., Waarlo, N., Agnini, C., Bijl, P. K., van der Boon, A., Brinkhuis, H., Frieling, J., Krijgsman, W., Mather, T. A., Middelburg, J. J., Peterse, F., Slomp, C. P., & Sluijs, A. (2023). Deoxygenation and organic carbon sequestration in the Tethyan realm associated with the middle Eocene climatic optimum. Bulletin of the Geological Society of America, 135(5-6), 1280-1296. https://doi.org/10.1130/B36280.1
van der Ploeg, R., Cramwinckel, M. J., Kocken, I. J., Leutert, T. J., Bohaty, S. M., Fokkema, C. D., Hull, P. M., Meckler, A. N., Middelburg, J. J., Müller, I. A., Penman, D. E., Peterse, F., Reichart, G. J., Sexton, P. F., Vahlenkamp, M., De Vleeschouwer, D., Wilson, P. A., Ziegler, M., & Sluijs, A. (2023). North Atlantic surface ocean warming and salinization in response to middle Eocene greenhouse warming. Science advances, 9(4), 1-16. Article eabq0110. https://doi.org/10.1126/sciadv.abq0110
Middelburg, J. J. (2023). Unified prediction of organic matter preservation and degradation. Communications Earth & Environment, 4(1), Article 17. https://doi.org/10.1038/s43247-023-00682-z
https://dspace.library.uu.nl/bitstream/handle/1874/427000/s43247_023_00682_z.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/427000/s43247_023_00682_z.pdf?sequence=1
2022
Scholarly publications
Akse, S. P., Polerecky, L., Kienhuis, M. V. M., & Middelburg, J. J. (2022). The influence of sediment diagenesis and aluminium on oxygen isotope exchange of diatom frustules. Geochimica et Cosmochimica Acta, 333, 362-372. https://doi.org/10.1016/j.gca.2022.07.015
Hülse, D., Vervoort, P., van de Velde, S. J., Kanzaki, Y., Boudreau, B., Arndt, S., Bottjer, D. J., Hoogakker, B., Kuderer, M., Middelburg, J. J., Volkenborn, N., Kirtland Turner, S., & Ridgwell, A. (2022). Assessing the impact of bioturbation on sedimentary isotopic records through numerical models. Earth-Science Reviews, 234, 1-16. Article 104213. https://doi.org/10.1016/j.earscirev.2022.104213
Su, Y., Li, K., Zhang, Y., Liu, Z., Wang, T., Jeppesen, E., Middelburg, J. J., & Smol, J. P. (2022). Effects of climate change and nutrient concentrations on carbon sources for zooplankton in a Tibetan Plateau lake over the past millennium. Journal of Paleolimnology, 68(3), 249-263. https://doi.org/10.1007/s10933-022-00245-w
Hanz, U., Riekenberg, P., de Kluijver, A., van der Meer, M., Middelburg, J. J., de Goeij, J. M., Bart, M. C., Wurz, E., Colaço, A., Duineveld, G. C. A., Reichart, G.-J., Rapp, H.-T., & Mienis, F. (2022). The important role of sponges in carbon and nitrogen cycling in a deep-sea biological hotspot. Functional Ecology, 36(9), 2188-2199. https://doi.org/10.1111/1365-2435.14117
Sulpis, O., Humphreys, M. P., Wilhelmus, M. M., Carroll, D., Berelson, W. M., Menemenlis, D., Middelburg, J. J., & Adkins, J. F. (2022). RADIv1: a non-steady-state early diagenetic model for ocean sediments in Julia and MATLAB/GNU Octave. Geoscientific Model Development, 15(5), 2105-2131. https://doi.org/10.5194/gmd-15-2105-2022
Geerlings, N. M. J., Kienhuis, M. V. M., Hidalgo-Martinez, S., Hageman, R., Vasquez-Cardenas, D., Middelburg, J. J., Meysman, F. J. R., & Polerecky, L. (2022). Polyphosphate Dynamics in Cable Bacteria. Frontiers in Microbiology, 13, 1-18. Article 883807. https://doi.org/10.3389/fmicb.2022.883807
Duarte, C. M., Gattuso, J.-P., Hancke, K., Gundersen, H., Filbee-Dexter, K., Pedersen, M. F., Middelburg, J. J., Burrows, M., Krumhansl, K. A., Wernberg, T., Moore, P., Pessarrodona, A., Ørberg, S. B., Pinto, I. S., Assis, J., Queirós, A., Smale, D. A., Bekkby, T., Serrão, E., & Krause-Jensen, D. (2022). Global estimates of the extent and production of macroalgal forests. Global Ecology and Biogeography, 31(7), 1422-1439. https://doi.org/10.1111/geb.13515
Müller, G., Börker, J., Sluijs, A., & Middelburg, J. J. (2022). Detrital carbonate minerals in Earth's element cycles. Global Biogeochemical Cycles, 36(5), 1-19. Article e2021GB007231. https://doi.org/10.1029/2021GB007231
Chen, N., Wang, J., Liu, X., Zhang, C., Huang, B., Beusen, A. H. W., Middelburg, J. J., & Bouwman, A. F. (2022). Exploring Seasonal and Annual Nitrogen Transfer and Ecological Response in River-Coast Continuums Based on Spatially Explicit Models. Journal of Geophysical Research: Biogeosciences, 127(1), Article e2021JG006634. https://doi.org/10.1029/2021JG006634
Sulpis, O., Agrawal, P., Wolthers, M., Munhoven, G., Walker, M., & Middelburg, J. J. (2022). Aragonite dissolution protects calcite at the seafloor. Nature Communications, 13(1), 1-8. Article 1104. https://doi.org/10.1038/s41467-022-28711-z
Morganti, T. M., Slaby, B. M., De Kluijver, A., Busch, K., Hentschel, U., Middelburg, J. J., Grotheer, H., Mollenhauer, G., Dannheim, J., Rapp, H. T., Purser, A., & Boetius, A. (2022). Giant sponge grounds of Central Arctic seamounts are associated with extinct seep life. Nature Communications, 13(1), 1-15. Article 638. https://doi.org/10.1038/s41467-022-28129-7
Epstein, G., Middelburg, J. J., Hawkins, J. P., Norris, C. R., & Roberts, C. M. (2022). The impact of mobile demersal fishing on carbon storage in seabed sediments. Global Change Biology, 28(9), 2875-2894. https://doi.org/10.1111/gcb.16105
Geerken, E., de Nooijer, L., Toyofuku, T., Roepert, A., Middelburg, J. J., Kienhuis, M. V. M., Nagai, Y., Polerecky, L., & Reichart, G.-J. (2022). High precipitation rates characterize biomineralization in the benthic foraminifer Ammonia beccarii. Geochimica et Cosmochimica Acta, 318, 70-82. https://doi.org/10.1016/j.gca.2021.11.026
2021
Scholarly publications
van Hoek, W. J., Wang, J., Vilmin, L., Beusen, A. H. W., Mogollón, J. M., Müller, G., Pika, P. A., Liu, X., Langeveld, J. J., Bouwman, A. F., & Middelburg, J. J. (2021). Exploring Spatially Explicit Changes in Carbon Budgets of Global River Basins during the 20th Century. Environmental Science and Technology, 55(24), 16757-16769. https://doi.org/10.1021/acs.est.1c04605
Bianchi, T. S., Aller, R. C., Atwood, T. B., Brown, C. J., Buatois, L. A., Levin, L. A., Levinton, J. S., Middelburg, J. J., Morrison, E. S., Regnier, P., Shields, M. R., Snelgrove, P. V. R., Sotka, E. E., & Stanley, R. R. E. (2021). What global biogeochemical consequences will marine animal–sediment interactions have during climate change? Elementa, 9(1), Article 00180. https://doi.org/10.1525/elementa.2020.00180
Sulpis, O., Jeansson, E., Dinauer, A., Lauvset, S. K., & Middelburg, J. J. (2021). Calcium carbonate dissolution patterns in the ocean. Nature Geoscience, 14(6), 423-428. https://doi.org/10.1038/s41561-021-00743-y
Yan, J., Chen, N., Wang, F., Liu, Q., Wu, Z., Middelburg, J. J., Xie, Y., Guo, W., & Zhang, X. (2021). Interaction Between Oxygen Consumption and Carbon Dioxide Emission in a Subtropical Hypoxic Reservoir, Southeastern China. Journal of Geophysical Research: Biogeosciences, 126(4), 1-18. Article e2020JG006133. https://doi.org/10.1029/2020jg006133
https://dspace.library.uu.nl/bitstream/handle/1874/411894/2020JG006133.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/411894/2020JG006133.pdf?sequence=1
Geerlings, N. M. J., Geelhoed, J. S., Vasquez-Cardenas, D., Kienhuis, M. V. M., Hidalgo-Martinez, S., Boschker, H. T. S., Middelburg, J. J., Meysman, F. J. R., & Polerecky, L. (2021). Cell Cycle, Filament Growth and Synchronized Cell Division in Multicellular Cable Bacteria. Frontiers in Microbiology, 12, 1-22. Article 620807. https://doi.org/10.3389/fmicb.2021.620807
Wang, J., Bouwman, A. F., Liu, X., Beusen, A. H. W., Van Dingenen, R., Dentener, F., Yao, Y., Glibert, P. M., Ran, X., Yao, Q., Xu, B., Yu, R., Middelburg, J. J., & Yu, Z. (2021). Harmful Algal Blooms in Chinese Coastal Waters Will Persist Due to Perturbed Nutrient Ratios. Environmental science & technology letters, 8(3), 276-284. https://doi.org/10.1021/acs.estlett.1c00012
de Kluijver, A., Bart, M. C., van Oevelen, D., de Goeij, J. M., Leys, S. P., Maier, S. R., Maldonado, M., Soetaert, K., Verbiest, S., & Middelburg, J. J. (2021). An Integrative Model of Carbon and Nitrogen Metabolism in a Common Deep-Sea Sponge (Geodia barretti). Frontiers in Marine Science, 7, 1-18. Article 596251. https://doi.org/10.3389/fmars.2020.596251
Müller, G., Middelburg, J. J., & Sluijs, A. (2021). Introducing GloRiSe - A global database on river sediment composition. Earth System Science Data, 13(7), 3565-3575. https://doi.org/10.5194/essd-13-3565-2021
de Kluijver, A., Nierop, K. G. J., Morganti, T. M., Bart, M. C., Slaby, B. M., Hanz, U., de Goeij, J. M., Mienis, F., & Middelburg, J. J. (2021). Bacterial precursors and unsaturated long-chain fatty acids are biomarkers of North-Atlantic deep-sea demosponges. PLoS One, 16(1), Article e0241095. https://doi.org/10.1371/journal.pone.0241095
Yu, L., Rozemeijer, J. C., Peter Broers, H., Van Breukelen, B. M., Middelburg, J. J., Ouboter, M., & Van Der Velde, Y. (2021). Drivers of nitrogen and phosphorus dynamics in a groundwater-fed urban catchment revealed by high-frequency monitoring. Hydrology and Earth System Sciences, 25(1), 69-87. https://doi.org/10.5194/hess-25-69-2021
Akse, S. P., Das, G., Agustí, S., Pichevin, L., Polerecky, L., & Middelburg, J. J. (2021). Imaging of organic signals in individual fossil diatom frustules with nanoSIMS and Raman spectroscopy. Marine Chemistry, 228, 1-6. Article 103906. https://doi.org/10.1016/j.marchem.2020.103906
Jacques, C., Gkritzalis, T., Tison, J. L., Hartley, T., van der Veen, C., Röckmann, T., Middelburg, J. J., Cattrijsse, A., Egger, M., Dehairs, F., & Sapart, C. J. (2021). Carbon and Hydrogen Isotope Signatures of Dissolved Methane in the Scheldt Estuary. Estuaries and Coasts, 44(1), 137–146. https://doi.org/10.1007/s12237-020-00768-3
2020
Scholarly publications
Langeveld, J., Bouwman, A. F., van Hoek, W. J., Vilmin, L., Beusen, A. H. W., Mogollón, J. M., & Middelburg, J. J. (2020). Estimating dissolved carbon concentrations in global soils: a global database and model. SN Applied Sciences, 2(10), Article 1626. https://doi.org/10.1007/s42452-020-03290-0
Müller, G., Middelburg, J. J., & Sluijs, A. (2020). Balancing the oceans alkalinity budget by physical weathering of carbonate rocks. Abstract from GeoUtrecht 2020, Utrecht, Netherlands.
Müller, G., Middelburg, J. J., & Sluijs, A. (2020). Closing the Modern Ocean Alkalinity Budget by Riverine Particulate Inorganic Carbon. Abstract from Goldschmidt 202. https://doi.org/10.46427/gold2020.1865
Roepert, A., Polerecky, L., Geerken, E., Reichart, G. J., & J. Middelburg, J. (2020). Distribution of chlorine and fluorine in benthic foraminifera. Biogeosciences, 17(18), 4727-4743. Article 4727. https://doi.org/10.5194/bg-17-4727-2020
Middelburg, J. J., Soetaert, K., & Hagens, M. (2020). Ocean Alkalinity, Buffering and Biogeochemical Processes: Review Article. Reviews of Geophysics, 58(3), Article e2019RG000681. https://doi.org/10.1029/2019RG000681
Middelburg, J. J. (2020). Are nutrients retained by river damming? National Science Review, 7(9), 1458. https://doi.org/10.1093/nsr/nwaa073
Wagner, S., Schubotz, F., Kaiser, K., Hallmann, C., Waska, H., Rossel, P. E., Hansmann, R., Elvert, M., Middelburg, J. J., Engel, A., Blattmann, T. M., Catalá, T. S., Lennartz, S. T., Gomez-Saez, G. V., Pantoja-Gutiérrez, S., Bao, R., & Galy, V. (2020). Soothsaying DOM: A current perspective on the future of oceanic dissolved organic carbon. Frontiers in marine science, 7, Article 341. https://doi.org/10.3389/fmars.2020.00341
Akse, S. P., Middelburg, J. J., King, H. E., & Polerecky, L. (2020). Rapid post-mortem oxygen isotope exchange in biogenic silica. Geochimica et Cosmochimica Acta, 284, 61-74. https://doi.org/10.1016/j.gca.2020.06.007
Vilmin, L., Mogollón, J. M., Beusen, A. H. W., van Hoek, W. J., Liu, X., Middelburg, J. J., & Bouwman, A. F. (2020). Modeling process-based biogeochemical dynamics in surface freshwaters of large watersheds with the IMAGE-DGNM framework. Journal of Advances in Modeling Earth Systems, 12(11), Article e2019MS001796. https://doi.org/10.1029/2019MS001796
Liu, X., van Hoek, W. J., Vilmin, L., Beusen, A., Mogollon, J., Middelburg, J. J., & Bouwman, A. F. (2020). Exploring long term changes in silicon biogeochemistry along the river continuum of the Rhine and Yangtze (Changjiang). Environmental Science & Technology, 54(19), 11940-11950. https://doi.org/10.1021/acs.est.0c01465
Guo, J., Glendell, M., Meersmans, J., Kirkels, F., Middelburg, J. J., & Peterse, F. (2020). Assessing branched tetraether lipids as tracers of soil organic carbon transport through the Carminowe Creek catchment (southwest England). Biogeosciences, 17(12), 3183-3201. https://doi.org/10.5194/bg-17-3183-2020
Tan, E., Zou, W., Zheng, Z., Yan, X., Du, M., Hsu, T.-C., Tian, L., Middelburg, J. J., Trull, T. W., & Kao, S.-J. (2020). Warming stimulates sediment denitrification at the expense of anaerobic ammonium oxidation. Nature Climate Change, 10(4), 349-355. https://doi.org/10.1038/s41558-020-0723-2
Geerlings, N. M. J., Karman, C., Trashin , S., As, K. S., Kienhuis, M. V. M., Hidalgo-Martinez, S., Vasquez-Cardenas, D., Boschker, H. T. S., De Wael, K., Middelburg, J. J., Polerecky, L., & Meysman , F. J. R. (2020). Division of labor and growth during electrical cooperation in multicellular cable bacteria. PNAS, 17(10), 5478-5485. https://doi.org/10.1073/pnas.1916244117
Grothe, A., Andreetto, F., Reichart, G. J., Wolthers, M., van Baak, C. G. C., Vasiliev, I., Stoica, M., Sangiorgi, F., Middelburg, J. J., Davies, G. R., & Krijgsman, W. (2020). Paratethys pacing of the Messinian Salinity Crisis: Low salinity waters contributing to gypsum precipitation? Earth and Planetary Science Letters, 532, 1-12. Article 1160029. https://doi.org/10.1016/j.epsl.2019.116029
Professional publications
Middelburg, J., & de Blok, J. W. (2020). Self-assessment of research of the Department of Earth Sciences 2014-2019. UU Dept. of Earth Sciences.
2019
Scholarly publications
González-Benítez, N., García-Corral, L. S., Morán, X. A. G., Middelburg, J. J., Pizay, M. D., & Gattuso, J. P. (2019). Drivers of Microbial Carbon Fluxes Variability in Two Oligotrophic Mediterranean Coastal Systems. Scientific Reports, 9, Article 17669. https://doi.org/10.1038/s41598-019-53650-z
Lengger, S. K., Rush, D., Mayser, J. P., Blewett, J., Schwartz-Narbonne, R., Talbot, H. M., Middelburg, J. J., Jetten, M. S. M., Schouten, S., Sinninghe Damsté, J. S., & Pancost, R. D. (2019). Dark carbon fixation in the Arabian Sea oxygen minimum zone contributes to sedimentary organic carbon (SOM). Global Biogeochemical Cycles, 33(12), 1715-1732. https://doi.org/10.1029/2019GB006282
van der Ploeg, R., Boudreau, B. P., Middelburg, J. J., & Sluijs, A. (2019). Cenozoic carbonate burial along continental margins. Geology, 47(11), 1025-1028. https://doi.org/10.1130/G46418.1
Weiss, G. M., Roepert, A., Middelburg, J. J., Schouten, S., Sinninghe Damsté, J. S., & van der Meer, M. T. J. (2019). Hydrogen isotope fractionation response to salinity and alkalinity in a calcifying strain of Emiliania huxleyi. Organic Geochemistry, 134, 62-65. https://doi.org/10.1016/j.orggeochem.2019.06.001
Saderne, V., N.R., G., Macreadie, P. I., Maher, D. T., Middelburg, J. J., Serrano, O., Almahasheer, H., Arias-Ortiz, A., Cusack, M., Eyre, B. D., Fourqurean, J. W., Kennedy, H., Krause-Jensen, D., Kuwae, T., Lavery, P. S., Lovelock, C. E., Marba, N., Masqué, P., Mateo, M. A., ... Duarte, C. M. (2019). Role of carbonate burial in Blue Carbon budgets. Nature Communications, 10, Article 1106. https://doi.org/10.1038/s41467-019-08842-6
Remmelzwaal, S. R. C., Sadekov, A. Y., Parkinson, I. J., Schmidt, D. N., Titelboim, D., Abramovich, S., Roepert, A., Kienhuis, M., Polerecky, L., Goring-Harford, H., Kimoto, K., Allen, K. A., Holland, K., Stewart, J. A., & Middelburg, J. J. (2019). Post-depositional overprinting of chromium in foraminifera. Earth and Planetary Science Letters, 515, 100-111. https://doi.org/10.1016/j.epsl.2019.03.001
https://dspace.library.uu.nl/bitstream/handle/1874/381012/post_depositional_overprinting.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/381012/post_depositional_overprinting.pdf?sequence=1
Boudreau, B. P., Middelburg, J. J., Sluijs, A., & van der Ploeg, R. (2019). Secular variations in the carbonate chemistry of the oceans over the Cenozoic. Earth and Planetary Science Letters, 512, 194-206. https://doi.org/10.1016/j.epsl.2019.02.004
Geerlings, N., Zetsche, E.-M., Hidalgo-Martinez, S., Middelburg, J. J., & Meysman, F. J. R. (2019). Mineral formation induced by cable bacteria performing long-distance electron transport in marine sediments. Biogeosciences, 16(3), 811-829. https://doi.org/10.5194/bg-16-811-2019
Cramwinckel, M. J., van der Ploeg, R., Bijl, P. K., Peterse, F., Bohaty, S. M., Röhl, U., Schouten, S., Middelburg, J. J., & Sluijs, A. (2019). Harmful algae and export production collapse in the equatorial Atlantic during the zenith of Middle Eocene Climatic Optimum warmth. Geology, 47(3), 247-250. https://doi.org/10.1130/g45614.1
Middelburg, J. J. (2019). Marine Carbon Biogeochemistry: A Primer for Earth System Scientists. (Springer Briefs in Earth System Sciences). Springer. https://doi.org/10.1007/978-3-030-10822-9
Glibert, P. M., Middelburg, J. J., McClelland, J. W., & Vander Zanden, M. J. (2019). Stable isotope tracers: Enriching our perspectives and questions on sources, fates, rates, and pathways of major elements in aquatic systems. Limnology and Oceanography, 64(3), 950-981. https://doi.org/10.1002/lno.11087
Kocken, I. J., Cramwinckel, M. J., Zeebe, R., Middelburg, J. B. M., & Sluijs, A. (2019). The 405 kyr and 2.4 Myr eccentricity components in Cenozoic carbon isotope records. Climate of the Past, 15(1), 91-104. https://doi.org/10.5194/cp-2018-42, https://doi.org/10.5194/cp-15-91-2019
2018
Scholarly publications
Boudreau, B. P., Middelburg, J. J., & Luo, Y. (2018). The role of calcification in carbonate compensation. Nature Geoscience, 11(12), 894-900. https://doi.org/10.1038/s41561-018-0259-5
https://dspace.library.uu.nl/bitstream/handle/1874/375025/s41561_018_0259_5.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/375025/s41561_018_0259_5.pdf?sequence=1
Gattuso, J. P., Magnan, A. K., Bopp, L., Cheung, W. W. L., Duarte, C. M., Hinkel, J., Mcleod, E., Micheli, F., Oschlies, A., Williamson, P., Billé, R., Chalastani, V. I., Gates, R. D., Irisson, J. O., Middelburg, J. J., Pörtner, H. O., & Rau, G. H. (2018). Ocean solutions to address climate change and its effects on marine ecosystems. Frontiers in Marine Science, 5(OCT), Article 337. https://doi.org/10.3389/fmars.2018.00337
Su, Y., Hu, E., Liu, Z., Jeppesen, E., & Middelburg, J. J. (2018). Assimilation of ancient organic carbon by zoöplankton in Tibetan Plateau lakes is depending on watershed characteristics. Limnology and Oceanography, 63(6), 2359-2371. https://doi.org/10.1002/lno.10943
van der Ploeg, R., Selby, D., Cramwinckel, M. J., Li, Y., Bohaty, S. M., Middelburg, J. J., & Sluijs, A. (2018). Middle Eocene greenhouse warming facilitated by diminished weathering feedback. Nature Communications, 9(1), Article 2877. https://doi.org/10.1038/s41467-018-05104-9
Dean, J. F., Middelburg, J. J., Röckmann, T., Aerts, R., Blauw, L. G., Egger, M., Jetten, M. S. M., de Jong, A. E. E., Meisel, O. H., Rasigraf, O., Slomp, C. P., in't Zandt, M. H., & Dolman, A. J. (2018). Methane Feedbacks to the Global Climate System in a Warmer World. Reviews of Geophysics, 56(1), 207-250. https://doi.org/10.1002/2017RG000559
van Bree, L. G. J., Peterse, F., van der Meer, M. T. J., Middelburg, J. J., Negash, A. M. D., De Crop, W., Cocquyt, C., Wieringa, J. J., Verschuren, D., & Sinninghe Damsté, J. S. (2018). Seasonal variability in the abundance and stable carbon-isotopic composition of lipid biomarkers in suspended particulate matter from a stratified equatorial lake (Lake Chala, Kenya/Tanzania): Implications for the sedimentary record. Quaternary Science Reviews, 192, 208-224. https://doi.org/10.1016/j.quascirev.2018.05.023
van Oevelen, D., Mueller, C. E., Lundälv, T., van Duyl, F. C., de Goeij, J. M., & Middelburg, J. J. (2018). Niche overlap between a cold-water coral and an associated sponge for isotopically-enriched particulate food sources. PLoS One, 13(3), Article e0194659. https://doi.org/10.1371/journal.pone.0194659
Lessin, G., Artioli, Y., Almroth-Rosell, E., Blackford, J. C., Dale, A. W., Glud, R. N., Middelburg, J. J., Pastres, R., Queirós, A. M., Rabouille, C., Regnier, P., Soetaert, K., Solidoro, C., & Yakushev, E. (2018). Modelling marine sediment biogeochemistry: current knowledge gaps, challenges and some methodological advice for advancement. Frontiers in Marine Science, 5, Article 19. https://doi.org/10.3389/fmars.2018.00019
Frieling, J., Reichart, G.-J., Middelburg, J. J., Röhl, U., Westerhold, T., Bohaty, S. M., & Sluijs, A. (2018). Tropical Atlantic climate and ecosystem regime shifts during the Paleocene-Eocene Thermal Maximum. Climate of the Past, 14(1), 39-55. https://doi.org/10.5194/cp-14-39-2018
Middelburg, J. J. (2018). Review and syntheses: to the bottom of carbon processing at the seafloor. Biogeosciences, 15(2), 413-427. https://doi.org/10.5194/bg-15-413-2018
Sulu-Gambari, F., Hagens, M., Behrends, T., Seitaj, D., Meysman, F. J. R., Middelburg, J., & Slomp, C. P. (2018). Phosphorus Cycling and Burial in Sediments of a Seasonally Hypoxic Marine Basin. Estuaries and Coasts, 41(4), 921-939. https://doi.org/10.1007/s12237-017-0324-0
Professional publications
Magnan, A. K., Billé, R., Bopp, L., Chalastani, V. I., Cheung, W. W. L., Duarte, C. M., Gates, R. D., Hinkel, J., Irisson, J. O., Mcleod, E., Micheli, F., Middelburg, J. J., Oschlies, A., Pörtner, H. O., Rau, G. H., Williamson, P., & Gattuso, J. P. (2018). Ocean-based measures for climate action. Presses de Sciences Po. https://www.iddri.org/en/publications-and-events/policy-brief/ocean-based-measures-climate-action
2017
Scholarly publications
Kostadinova, A. I., Middelburg, J., Ciulla, M., Garssen, J., Hennink, W. E., Knippels, L. M., Van Nostrum, C. F., & Willemsen, L. E. (2017). Short beta-lactoglobulin-derived peptides loaded in PLGA nanoparticles for the prevention of cow's milk allergy. Allergy: European Journal of Allergy and Clinical Immunology, 72, 140-141. https://doi.org/10.1111/all.13247
Lammers, J. M., Schubert, C. J., Middelburg, J. J., & Reichart, G. J. (2017). Microbial carbon processing in oligotrophic Lake Lucerne (Switzerland): results of in situ 13C-labelling studies. Biogeochemistry, 136(2), 131-149. https://doi.org/10.1007/s10533-017-0389-7
Su, Y., Lammers, M., Zhang, Y., van Bree, L., Liu, Z., Reichart, G.-J., & Middelburg, J. J. (2017). Sources of organic matter for bacteria in sediments of Lake Rotsee, Switzerland. Journal of Paleolimnology, 58(3), 391-402. https://doi.org/10.1007/s10933-017-9985-8
https://dspace.library.uu.nl/bitstream/handle/1874/355579/Sources.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/355579/Sources.pdf?sequence=1
Lammers, J. M., Reichart, G.-J., & Middelburg, J. J. (2017). Seasonal variability in phytoplankton stable carbon isotope ratios and bacterial carbon sources in a shallow Dutch lake. Limnology and Oceanography, 62(6), 2773-2787. https://doi.org/10.1002/lno.10605
Christianen, M. J. A., Middelburg, J. J., Holthuijsen, S. J., Jouta, J., Compton, T. J., van der Heide, T., Piersma, T., Sinninghe Damsté, J. S., van der Veer, H. W., Schouten, S., & Olff, H. (2017). Benthic primary producers are key to sustain the Wadden Sea food web: stable carbon isotope analysis at landscape scale. Ecology, 98(6), 1498-1512. https://doi.org/10.1002/ecy.1837
https://dspace.library.uu.nl/bitstream/handle/1874/352458/Benthic.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/352458/Benthic.pdf?sequence=1
Morales, C., Rogov, M., Wierzbowski, H., Ershova, V., Suan, G., Adatte, T., Föllmi, K. B., Tegelaar, E., Reichart, G.-J., de Lange, G. J., Middelburg, J. J., & van de Schootbrugge, B. (2017). Glendonites track methane seepage in Mesozoic polar seas. Geology, 45(6), 503-506. https://doi.org/10.1130/G38967.1
https://dspace.library.uu.nl/bitstream/handle/1874/350029/Geology.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/350029/Geology.pdf?sequence=1
Holding, J. M., Duarte, C. M., Delgado-Huertas, A., Soetaert, K., Vonk, J. E., Agusti, S., Wassmann, P., & Middelburg, J. J. (2017). Autochthonous and allochthonous contributions of organic carbon to microbial food webs in Svalbard fjords. Limnology and Oceanography, 62(3), 1307-1323. https://doi.org/10.1002/lno.10526
Jickells, T. D., Buitenhuis, E., Altieri, K., Baker, A. R., Capone, D., Duce, R. A., Dentener, F., Fennel, F., Kanakidou, M., LaRoche, J., Lee, K., Liss, P., Middelburg, J. J., Moore, J. K., Okin, G., Oschlies, A., Sarin, M., Seitzinger, S., Sharples, J., ... Zamora, L. M. (2017). A reevaluation of the magnitude and impacts of anthropogenic atmospheric nitrogen inputs on the ocean. Global Biogeochemical Cycles, 31(2), 289-305. https://doi.org/10.1002/2016GB005586
Frieling, J., Gebhardt, H., Huber, M., Adekeye, O. A., Akande, S. O., Reichart, G.-J., Middelburg, J. J., Schouten, S., & Sluijs, A. (2017). Extreme warmth and heat-stressed plankton in the tropics during the Paleocene-Eocene Thermal Maximum. Science advances, 3(3), Article e1600891. https://doi.org/10.1126/sciadv.1600891
Le Guitton, M., Soetaert, K., Sinninghe Damsté, J. S., & Middelburg, J. J. (2017). A seasonal study of particulate organic matter composition and quality along an offshore transect in the Southern North Sea. Estuarine, Coastal and Shelf Science, 188, 1-11. https://doi.org/10.1016/j.ecss.2017.02.002
Sharples, J., Middelburg, J. J., Fennel, K., & Jickells, T. (2017). What proportion of riverine nutrients reaches the open ocean? Global Biogeochemical Cycles, 31(1), 39-58. https://doi.org/10.1002/2016GB005483
Maugendre, L., J.-P., G., de Kluijver, A., Soetaert, K., van Oevelen, D., Middelburg, J. J., & Gazeau, F. (2017). Carbon-13 labelling shows no effect of ocean acidification on carbon transfer in Mediterranean plankton communities. Estuarine, Coastal and Shelf Science, 186(Part A), 100-111. https://doi.org/10.1016/j.ecss.2015.12.018
Professional publications
de Blok, J.-W., Middelburg, J. J., & Drury, M. R. (2017). Self-assessment of Research, Mid-term Review 2017: Department of Earth Sciences 2014-2016, internal report. UU Dept. of Earth Sciences.
Other output
Dolman, A. J., Dean, J. F., Aerts, R., Blauw, L., Egger, M., Jetten, M. S. M., de Jong, A., Meisel, O. H., Rasigraf, O., Röckmann, T., Slomp, C., in 't Zandt, M., & Middelburg, J. J. (2017). Methane feedbacks to the global carbon cycle in a warming climate – combining microbial and geochemical perspectives. Abstract from EGU General Assembly 2017, Vienna, Austria.
Middelburg, J. J. (2017). EGU2017-2283 To the bottom of carbon processing at the seafloor: towards integration of geological, geochemical and ecological concepts (Vladimir Ivanovich Vernadsky Medal Lecture). Abstract from European Geosciences Union General Assembly 2017, Vienna, Austria.
2016
Scholarly publications
Hagens, M., & Middelburg, J. J. (2016). Attributing seasonal pH variability in surface ocean waters to governing factors. Geophysical Research Letters, 43(24), 12528-12537. https://doi.org/10.1002/2016GL071719
Lammers, J. M., Schubert, C. J., Middelburg, J. J., & Reichart, G.-J. (2016). Carbon flows in eutrophic Lake Rotsee: a ¹³C-labelling experiment. Biogeochemistry, 131(1), 147-162. https://doi.org/10.1007/s10533-016-0272-y
van Oevelen, D., Mueller, C. E., Lundälv, T., & Middelburg, J. J. (2016). Food selectivity and processing by the cold-water Coral Lophelia pertusa. Biogeosciences, 13(20), 5789-5798. https://doi.org/10.5194/bg-13-5789-2016
Luo, Y., Boudreau, B. P., Dickens, G. R., Sluijs, A., & Middelburg, J. J. (2016). An alternative model for CaCO3 over-shooting during the PETM: Biological carbonate compensation. Earth and Planetary Science Letters, 453, 223-233. https://doi.org/10.1016/j.epsl.2016.08.012
Eyre, B. D., Oakes, J. M., & Middelburg, J. (2016). Fate of microphytobenthos nitrogen in subtropical subtidal sediments: A 15N pulse-chase study. Limnology and Oceanography, 61(6), 2108-2121. https://doi.org/10.1002/lno.10356
https://dspace.library.uu.nl/bitstream/handle/1874/341481/Fate_of_microphytobenthos_nitrogen_in_subtropical_subtidal_sediments.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/341481/Fate_of_microphytobenthos_nitrogen_in_subtropical_subtidal_sediments.pdf?sequence=1
Woulds, C., Bouillon, S., Cowie, G. L., Drake, E., Middelburg, J., & Witte, U. (2016). Patterns of carbon processing at the seafloor: the role of faunal and microbial communities in moderating carbon flows. Biogeosciences, 13(15), 4343-4357. https://doi.org/10.5194/bg-13-4343-2016
Beusen, A., Bouwman, A., van Beek, L. P. H., Mogollon, J., & Middelburg, J. J. (2016). Global riverine N and P transport to ocean increased during the 20th century despite increased retention along the aquatic continuum. Biogeosciences, 13(8), 2441-2451. https://doi.org/10.5194/bg-13-2441-2016
Bale, N. J., Hopmans, E. C., Schoon, P. L., de Kluijver, A., Downing, J. A., Middelburg, J. J., Sinninghe Damsté, J. S., & Schouten, S. (2016). Impact of trophic state on the distribution of intact polar lipids in surface waters of lakes. Limnology and Oceanography, 61(3), 1065-1077. https://doi.org/10.1002/lno.10274
Hagens, M., & Middelburg, J. B. M. (2016). Generalised expressions for the response of pH to changes in ocean chemistry. Geochimica et Cosmochimica Acta, 187, 334-349. https://doi.org/10.1016/j.gca.2016.04.012
https://dspace.library.uu.nl/bitstream/handle/1874/335190/Hagens_Middelburg_GCA_2016_accepted.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/335190/Hagens_Middelburg_GCA_2016_accepted.pdf?sequence=1
Walraven, N., Bakker, M., van Os, B., Klaver, G., Middelburg, J. J., & Davies, G. (2016). Pollution and Oral Bioaccessibility of Pb in Soils of Villages and Cities with a Long Habitation History. International Journal of Environmental Research and Public Health, 13, Article 221. https://doi.org/10.3390/ijerph13020221
Rix, L., de Goeij, J. M., Mueller, C. E., Struck, U., Middelburg, J. J., van Duyl, F. C., Al-Horani, F. A., Wild, C., Naumann, M. S., & van Oevelen, D. (2016). Coral mucus fuels the sponge loop in warm- and cold-water coral reef ecosystems. Scientific Reports, 6, Article 18715. https://doi.org/10.1038/srep18715
Brouwer, G. M., Duijnstee, I., Hazeleger, J. H., Rossi, F., Lourens, L. J., Middelburg, J. J., & Wolthers, M. (2016). Diet shifts and population dynamics of estuarine foraminifera during ecosystem recovery after experimentally induced hypoxia crises. Estuarine, Coastal and Shelf Science, 170, 20-33. https://doi.org/10.1016/j.ecss.2015.12.015
Svensson, E., Schouten, S., Hopmans, E. C., Middelburg, J. J., & Sinninghe Damste, J. (2016). Factors controlling the stable nitrogen isotopic composition (δ15N) of lipids in marine animals. PLoS One, 11(1), Article e0146321. https://doi.org/10.1371/journal.pone.0146321
Tadonléké, R. D., Pollet, T., van Rijswijk, P., Leberre, B., & Middelburg, J. J. (2016). Effects of oxygen loss on carbon processing and heterotrophic prokaryotes from an estuarine ecosystem: Results from stable isotope probing and cytometry analyses. Estuaries and Coasts, 39(4), 992-1005. https://doi.org/10.1007/s12237-015-0053-1
Other output
Akse, S. P., Kienhuis, M. V. M., Middelburg, J. B. M., & Polerecky, L. (2016). Diatom chemistry as a potential paleoproxy for sea surface conditions. Poster session presented at 6th international nanoSIMS users meeting, Utrecht, Netherlands.
Akse, S. P., Kienhuis, M. V. M., Middelburg, J. B. M., & Polerecky, L. (2016). Diatom chemistry as a potential paleoproxy for sea surface conditions. Poster session presented at Urbino Summer School in Paleoclimatology, Urbino, Italy.
https://dspace.library.uu.nl/bitstream/handle/1874/346339/Poster_USSP.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/346339/Poster_USSP.pdf?sequence=1
Akse, S. P., Polerecky, L., Kienhuis, M. V. M., & Middelburg, J. B. M. (2016). Diatom chemistry as a potential paleoproxy for sea surface conditions. Poster session presented at ICP 12, Utrecht, Netherlands.
https://dspace.library.uu.nl/bitstream/handle/1874/346338/Poster_ICP_7.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/346338/Poster_ICP_7.pdf?sequence=1
Flores, M. R., Polerecky, L., Middelburg, J. B. M., van Grinsven, S., & Liu, Z. (2016). Variability of short-term carbon uptake and transfer within a natural microbial community from Lake Taihu, China. Poster session presented at 6th international nanoSIMS users meeting, Utrecht, Netherlands.
van der Ploeg, R., Selby, D. S., Cramwinckel, M. J., Bohaty, S. M., Sluijs, A., & Middelburg, J. J. (2016). Global warming and ocean acidification through diminished weathering feedback during the Middle Eocene Climatic Optimum. 49th American Geophysical Union (AGU) Fall Meeting. Abstract from AGU Fall Meeting 2016, San Fransisco, California, United States.
Roepert, A., Polerecky, L., & Middelburg, J. J. (2016). Cl/Ca ratio of coccoliths as a salinity proxy. Abstract from 6th international nanoSIMS users meeting, Utrecht, Netherlands.
Roepert, A., Polerecky, L., & Middelburg, J. J. (2016). Cl/Ca ratio of coccoliths as a salinity proxy. Abstract from 12th International Conference on Paleoceanography, Utrecht, Netherlands.
Hagens, M., Slomp, C. P., Meysman, F., Seitaj, D., Harlay, J., Borges, A., & Middelburg, J. B. M. (2016). Biogeochemical processes and buffering capacity concurrently affect acidification in a seasonally hypoxic coastal marine basin. Abstract from Sustainability Conference Utrecht University 2016, Utrecht, Netherlands.
Hagens, M., Slomp, C. P., Meysman, F., Seitaj, D., Harlay, J., Borges, A., & Middelburg, J. J. (2016). Biogeochemical processes and buffering capacity concurrently affect acidification in a seasonally hypoxic coastal marine basin. Poster session presented at Sustainability Conference Utrecht University 2016, Utrecht, Netherlands.
Middelburg, J. (2016, Mar 29). Speeches Dies Natalis, 29 March 2016 (p.13): Appraisal for the honorary degree awarded to Prof. Dr. Sybil Seitzinger. Universiteit Utrecht.
https://dspace.library.uu.nl/bitstream/handle/1874/329033/Pages_from_speechesdies2016.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/329033/Pages_from_speechesdies2016.pdf?sequence=1
2015
Scholarly publications
Beusen, A. H. W., van Beek, L. P. H., Bouwman, L., Mogollon, J. M., & Middelburg, J. B. M. (2015). Coupling global models for hydrology and nutrient loading to simulate nitrogen and phosphorus retention in surface water – description of IMAGE–GNM and analysis of performance. Geoscientific Model Development, 8(12), 4045-4067. https://doi.org/10.5194/gmd-8-4045-2015
Middelburg, J. J., Mueller, C. E., Veuger, B., Larsson, A. I., Form, A., & van Oevelen, D. (2015). Discovery of symbiotic nitrogen fixation and chemoautotrophy in cold-water corals. Scientific Reports, 5, Article 17962. https://doi.org/10.1038/srep17962
Boudreau, B. P., Luo, Y., Meysman, F. J. R., Middelburg, J. J., & Dickens, G. R. (2015). Gas hydrate dissociation prolongs acidification of the Anthropocene oceans. Geophysical Research Letters, 42(21), 9337-9344. https://doi.org/10.1002/2015GL065779
Svensson, E., Schouten, S., Stam, A., Middelburg, J. J., & Sinninghe Damsté, J. S. (2015). Compound-specific stable isotope analysis of nitrogen-containing intact polar lipids. Rapid Communications in Mass Spectrometry, 29(23), 2263-2271. https://doi.org/10.1002/rcm.7393
le Guitton, M., Soetaert, K., Sinninghe Damsté, J. S., & Middelburg, J. J. (2015). Biogeochemical consequences of vertical and lateral transport of particulate organic matter in the southern North Sea: A multiproxy approach. Estuarine, Coastal and Shelf Science, 165, 117-127. https://doi.org/10.1016/j.ecss.2015.09.010
Brouwer, M. G. M., Wolthers, M., Hazeleger, J. H., Rossi, F., Lourens, L. J., Middelburg, J. J., & Duijnstee, I. A. P. (2015). Differential response of intertidal foraminifera to community recovery following experimentally induced hypoxia. Journal of Foraminiferal Research, 45(3), 220-234. https://doi.org/10.2113/gsjfr.45.3.220
Ruvalcaba, I., van Helmond, N. A. G. M., Tsandev, I., Middelburg, J. J., & Slomp, C. P. (2015). The nitrogen isotope composition of sediments from the proto-North Atlantic during Oceanic Anoxic Event 2. Paleoceanography, 30(7), 923-937. https://doi.org/10.1002/2014PA002744
Braeckman, U., Provoost, P., Sabbe, K., Soetaert, K., Middelburg, J. J., Vincx, M., & Vanaverbeke, J. (2015). Temporal dynamics in a shallow coastal benthic food web: Insights from fatty acid biomarkers and their stable isotopes. Marine Environmental Research, 108, 55. https://doi.org/10.1016/j.marenvres.2015.04.010
Middelburg, J. J. (2015). Escape by dilution: Dissolved organic matter in much of the deep ocean is too dilute to be consumed by microbes. Science, 348(6232), 290. https://doi.org/10.1126/science.aaa9852
https://dspace.library.uu.nl/bitstream/handle/1874/314588/290.full.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/314588/290.full.pdf?sequence=1
de Kluijver, A., Ning, J., Liu, Z., Jeppesen, E., Gulati, R. D., & Middelburg, J. J. (2015). Macrophytes and periphyton carbon subsidies to bacterioplankton and zooplankton in a shallow eutrophic lake in tropical China. Limnology and Oceanography, 60(2), 375-385. https://doi.org/10.1002/lno.10040
Vasquez-Cardenas, D., van de Vossenberg, J., Polerecky, L., Malkin, S. Y., Schauer, R., Hidalgo-Martinez, S., Confurius, V., Middelburg, J. J., Meysman, F. J. R., & Boschker, H. T. S. (2015). Microbial carbon metabolism associated with electrogenic sulphur oxidation in coastal sediments. The ISME Journal, 9(9), 1966-1978. https://doi.org/10.1038/ismej.2015.10
Hagens, M., Slomp, C., Meysman, F., Seitaj, D., Harlay, J., Borges, A., & Middelburg, J. (2015). Biogeochemical processes and buffering capacity concurrently affect acidification in a seasonally hypoxic coastal marine basin. Biogeosciences, 12, 1561-1583. https://doi.org/10.5194/bg-12-1561-2015
Kim, J.-H., Schouten, S., Rodrigo-Gámiz, M., Rampen, S., Marino, G., Huguet, C., Helmke, P., Buscail, R., Hopmans, E. C., Pross, J., Sangiorgi, F., Middelburg, J. B. M., & Sinninghe Damsté, J. S. (2015). Influence of deep-water derived isoprenoid tetraether lipids on the TEXH86 paleothermometer in the Mediterranean Sea. Geochimica et Cosmochimica Acta, 150, 125-141. https://doi.org/10.1016/j.gca.2014.11.017
https://dspace.library.uu.nl/bitstream/handle/1874/309842/1_s2.0_S0016703714006875_main_1.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/309842/1_s2.0_S0016703714006875_main_1.pdf?sequence=1
Walraven, N., Bakker, M., van Os, B. J. H., Klaver, G. T., Middelburg, J. J., & Davies, G. R. (2015). Factors controlling the oral bioaccessibility of anthropogenic Pb in polluted soils. Science of the Total Environment, 506-507, 149-163. https://doi.org/10.1016/j.scitotenv.2014.10.118
https://dspace.library.uu.nl/bitstream/handle/1874/302990/Factors_controlling.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/302990/Factors_controlling.pdf?sequence=1
Other output
Morales, C., Suan, G., Wierzbowski, H., Rogov, M., Teichert, B., Kienhuis, M. V. M., Polerecky, L., Middelburg, J. B. M., Reichart, G. J., & van de Schootbrugge, B. (2015). Mesozoic authigenic carbonate deposition in the Artic: Do glendonites record gas hydrate destabilization during the Jurassic?. Abstract from EGU General Assembly 2015, Vienna, Austria.
2014
Scholarly publications
de Kluijver, A., Schoon, P., Downing, J. A., Schouten, S., & Middelburg, J. J. (2014). Stable carbon isotope biogeochemistry of lakes along a trophic gradient. Biogeosciences, 11, 6265-6276. https://doi.org/10.5194/bg-11-6265-2014
Moneta, A., Veuger, B., van Rijswijk, P., Meysman, F., Soetaert, K., & Middelburg, J. J. (2014). Dissolved inorganic and organic nitrogen uptake in the coastal North Sea: A seasonal study. Estuarine, Coastal and Shelf Science, 147, 78-86. https://doi.org/10.1016/j.ecss.2014.05.022
Hagens, M., Hunter, K. A., Liss, P. S., & Middelburg, J. J. (2014). Biogeochemical context impacts seawater pH changes resulting from atmospheric sulfur and nitrogen deposition. Geophysical Research Letters, 41(3), 935-941. https://doi.org/10.1002/2013GL058796
Mueller, C., Larsson, A. I., Veuger, B., Middelburg, J. J., & van Oevelen, D. (2014). Opportunistic feeding on various organic food sources by the cold-water coral Lophelia pertusa. Biogeosciences, 11, 123-133. https://doi.org/10.5194/bg-11-123-2014
Gazeau, F., van Rijswijk, P., Pozzato, L., & Middelburg, J. J. (2014). Impacts of ocean acidification on sediment processes in shallow waters of the Arctic Ocean. PLoS One, 9(4), 1-11. Article e94068. https://doi.org/10.1371/journal.pone.0094068
Woulds, C., Middelburg, J. J., & Cowie, G. L. (2014). Alteration of organic matter during infaunal polychaete gut passage and links to sediment organic geochemistry. Part II: Fatty acids and aldoses. Geochimica et Cosmochimica Acta, 136, 38-59. https://doi.org/10.1016/j.gca.2014.02.013
Walraven, N., van Os, B. J. H., Klaver, G. T., Middelburg, J. J., & Davies, G. R. (2014). Reconstruction of historical atmospheric Pb using Dutch urban lake sediments: A Pb isotope study. Science of the Total Environment, 484, 185-195. https://doi.org/10.1016/j.scitotenv.2014.02.062
Svensson, E., Freitas, V., Schouten, S., Middelburg, J. J., van der Veer, H. W., & Sinninghe Damsté, J. S. (2014). Comparison of the stable carbon and nitrogen isotopic values of gill and white muscle tissue of fish. Journal of Experimental Marine Biology and Ecology, 457, 173-179. https://doi.org/10.1016/j.jembe.2014.04.014
Middelburg, J. J. (2014). Stable isotopes dissect aquatic food webs from the top to the bottom. Biogeosciences, 11(8), 2357-2371. https://doi.org/10.5194/bg-11-2357-2014
Walraven, N., van Os, B. J. H., Klaver, G. T., Middelburg, J. J., & Davies, G. R. (2014). The lead (Pb) isotope signature, behaviour and fate of traffic-related lead pollution in roadside soils in The Netherlands. Science of the Total Environment, 472, 888-900. https://doi.org/10.1016/j.scitoenv.2013.11.110
Professional publications
de Blok, J. W., Trampert, J., & Middelburg, J. (2014). Quality Assessment of Research: Self-assessment 2008-2013: Institute for Earth Sciences Utrecht (IVAU). UU Dept. of Earth Sciences.
Other output
Frieling, J., Gebhardt, H., Adekeye, O. A., Akande, S. O., Reichart, G. J., Middelburg, J. J., Schouten, S., & Sluijs, A. (2014). The Paleocene - Eocene Thermal Maximum: Temperature and ecology in the tropics. Rendiconti Online della Società Geologica Italiana, 31, 78. https://doi.org/10.3301/ROL.2014.55
Ruvalcaba, I., van Helmond, N. A. G. M., Tsandev, I., Middelburg, J. B. M., & Slomp, C. P. (2014). Reassessing the nitrogen isotope composition of sediments from the proto-North Atlantic during Oceanic Anoxic Event 2. Poster session presented at Last Darwin Day & First NESSC and SIAM Day, Veldhoven, Netherlands.
https://dspace.library.uu.nl/bitstream/handle/1874/396787/NESSC2014_Nisotopes.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/396787/NESSC2014_Nisotopes.pdf?sequence=1
Hagens, M., Slomp, C., Meysman, F., Borges, A., & Middelburg, J. (2014). Hypoxia and biogeochemical processes concurrently impact acidification in a seasonally stratified coastal marine lake. Abstract from Ocean Sciences Meeting 2014, Honolulu, United States.
Lammers, M., Schubert, C. J., Scharfbillig, A., Middelburg, J., & Reichart, G. (2014). Carbon cycling in lacustrine food webs, an in situ 13C-labeling experiment. Abstract from NAC12: the 12th Netherlands Earth Sciences Conference, Veldhoven. http://nac12.nl/conference-details/programme/session/70
Hagens, M., Slomp, C., Meysman, F., Borges, A., & Middelburg, J. (2014). Hypoxia and biogeochemical processes concurrently impact acidification in a seasonally stratified coastal marine lake. Abstract from NAC12: the 12th Netherlands Earth Sciences Conference, Veldhoven.
Hagens, M., Slomp, C., Meysman, F., Borges, A., & Middelburg, J. (2014). Hypoxia and biogeochemical processes concurrently impact acidification in a seasonally stratified coastal marine lake. Poster session presented at NAC12: the 12th Netherlands Earth Sciences Conference, Veldhoven.
Hagens, M., Hunter, K., Liss, P., & Middelburg, J. (2014). Biogeochemical context impacts seawater pH changes resulting from atmospheric sulfur and nitrogen deposition. Abstract from NAC12: the 12th Netherlands Earth Sciences Conference, Veldhoven.
Hagens, M., Slomp, C., Meysman, F., Seitaj, D., Borges, A., & Middelburg, J. (2014). Hypoxia and biogeochemical processes concomitantly influence acidification in the seasonally stratified coastal marine Lake Grevelingen, the Netherlands. Abstract from 46th GHER colloquium - Low oxygen environments in marine, estuarine and fresh waters, Liege, Belgium.
2013
Scholarly publications
Meysman, F. J. R., Galaktionov, O. S., Madani, S., & Middelburg, J. J. (2013). Modelling Biological Interactions in Aquatic Sediments as Coupled Reactive Transport. In E. Kristensen, R. R. Haese, & J. E. Kostka (Eds.), Interactions Between Macro- and Microorganisms in Marine Sediments (Vol. 60, pp. 359-388). (Coastal and Estuarine Studies; Vol. 60). Wiley-Blackwell. https://doi.org/10.1029/CE060p0359
Schoon, P. L., de Kluijver, A., Middelburg, J. J., Downing, J. A., Sinninghe Damsté, J. S., & Schouten, S. (2013). Influence of lake water pH and alkalinity on the distribution of core and intact polar branched glycerol dialkyl glycerol tetraethers (GDGTs) in lakes. Organic Geochemistry, 60, 72-82. https://doi.org/10.1016/j.orggeochem.2013.04.015
Rossi, F., Gribsholt, B., Gazeau, F., Di Santo, V., & Middelburg, J. J. (2013). Complex effects of ecosystem engineer loss on benthic ecosystem response to detrital macroalgae. PLoS One, 8(6), art.no. e66650. Article e66650. https://doi.org/10.1371/journal.pone.0066650
Walraven, N., van Gaans, P. F. M., van der Veer, G., van Os, B. J. H., Klaver, G. T., Vriend, S. P., Middelburg, J. J., & Davies, G. R. (2013). Tracing diffuse anthropogenic Pb sources in rural soils by means of Pb isotope analysis. Applied Geochemistry, 37, 242-257. https://doi.org/10.1016/j.apgeochem.2013.07.015
Arndt, S., Jørgensen, B. B., LaRowe, D. E., Middelburg, J. J., Pancost, R. D., & Regnier, P. (2013). Quantifying the degradation of organic matter in marine sediments: A review and synthesis. Earth-Science Reviews, 123, 53-86. https://doi.org/10.1016/j.earscirev.2013.02.008
Krumins, J. A., van Oevelen, D., Bezemer, T. M., De Deyn, G. B., Hol, W. H. G., van Donk, E., de Boer, W., de Ruiter, P. C., Middelburg, J. J., Monroy, F., Soetaert, K., Thébault, E., van de Koppel, J., van Veen, J. A., Viketoft, M., & van der Putten, W. H. (2013). Soil and freshwater and marine sediment food webs: their structure and function. BioScience, 63(1), 35-42. https://doi.org/10.1525/bio.2013.63.1.8
Pozzato, L., van Oevelen, D., Moodley, L., Soetaert, K., & Middelburg, J. J. (2013). Carbon processing at the deep-sea floor of the Arabian Sea oxygen minimum zone: A tracer approach. Journal of Sea Research, 78, 45-58. https://doi.org/10.1016/j.seares.2013.01.002
de Kluijver, A., Soetaert, K., Czerny, J., Schulz, K. G., Boxhammer, T., Riebesell, U., & Middelburg, J. J. (2013). A 13C labelling study on carbon fluxes in Arctic plankton communities under elevated CO2 levels. Biogeosciences, 10(3), 1425-1440. https://doi.org/10.5194/bg-10-1425-2013
de Goeij, J. M., van Oevelen, D., Vermeij, M. J. A., Osinga, R., Middelburg, J. J., de Goei, A. F. P. M., & Admiraal, W. (2013). Surviving in a marine desert: the sponge loop retains resources within coral reefs. Science, 342(6154), 108-110. https://doi.org/10.1126/science.1241981
Riebesell, U., Gattuso, J.-P., Thingstad, T. F., & Middelburg, J. J. (2013). Arctic ocean acidification: pelagic ecosystem and biogeochemical responses during a mesocosm study. Biogeosciences, 10, 5619-5626. https://doi.org/10.5194/bg-10-5619-2013
Voss, M., Bange, H. W., Dippner, J. W., Middelburg, J. J., Montoya, J. P., & Ward, B. (2013). The marine nitrogen cycle: recent discoveries, uncertainties and the potential relevance of climate change. Philosophical transactions / Royal Society of London. Biological sciences, 368(1621), 20130121. Article 20130121. https://doi.org/10.1098/rstb.2013.0121
Van Engeland, T., Bouma, T. J., Morris, E. P., Brun, F. G., Peralta, G., Lara, M., Hendriks, I. E., van Rijswijk, P., Veuger, B., Soetaert, K., & Middelburg, J. J. (2013). Dissolved organic matter uptake in a temperate seagrass ecosystem. Marine Ecology Progress Series, 478, 87-100. https://doi.org/10.3354/meps10183
Mueller, C. E., Lundälv, T., Middelburg, J. J., & van Oevelen, D. (2013). The symbiosis between Lophelia pertusa and Eunice norvegica stimulates coral calcification and worm assimilation. PLoS One, 8(3), art. e58660. Article e58660. https://doi.org/10.1371/journal.pone.0058660
Bouwman, A. F., Bierkens, M. F. P., Griffioen, J., Hefting, M. M., Middelburg, J. J., Middelkoop, H., & Slomp, C. P. (2013). Nutrient dynamics, transfer and retention along the aquatic continuum from land to ocean: towards integration of ecological and biogeochemical models. Biogeosciences, 10(1), 1-23. https://doi.org/10.5194/bg-10-1-2013
Veuger, B., Pitcher, A., Schouten, S., Sinninghe Damsté, J. S., & Middelburg, J. J. (2013). Nitrification and growth of autotrophic nitrifying bacteria and Thaumarchaeota in the coastal North Sea. Biogeosciences, 10(3), 1775-1785. https://doi.org/10.5194/bg-10-1775-2013
van Duinen, G. A., Vermonden, K., Bodelier, P. L. E., Hendriks, A. J., Leuven, R. S. E. W., Middelburg, J. J., van der Velde, G., & Verberk, W. C. E. P. (2013). Methane as a carbon source for the food web in raised bog pools. Freshwater Science, 32(4), 1260-1272. https://doi.org/10.1899/12-121.1
Pozzato, L., van Oevelen, D., Moodley, L., Soetaert, K., & Middelburg, J. J. (2013). Sink or link? The bacterial role in benthic carbon cycling in the Arabian Sea’s oxygen minimum zone. Biogeosciences, 10, 6879-6891. https://doi.org/10.5194/bg-10-6879-2013
Kürten, B., Painting, S. J., Struck, U., Polunin, N. V. C., & Middelburg, J. J. (2013). Tracking seasonal changes in North Sea zooplankton trophic dynamics using stable isotopes. Biogeochemistry, 113(1-3), 167-187. https://doi.org/10.1007/s10533-011-9630-y
Koho, K. A., Nierop, K. G. J., Moodley, L., Middelburg, J. J., Pozzato, L., Soetaert, K., & Reichart, G.-J. (2013). Microbial bioavailability regulates organic matter preservation in marine sediments. Biogeosciences, 10(2), 1131-1141. https://doi.org/10.5194/bg-10-1131-2013
Morris, E. P., Peralta, G., Van Engeland, T., Bouma, T. J., Brun, F. G., Lara, M., Hendriks, I. E., Benavente, J., Soetaert, K., Middelburg, J. J., & Perez-Llorens, J. L. (2013). The role of hydrodynamics in structuring in situ ammonium uptake within a submerged macrophyte community. Limnology and Oceanography: Fluids and Environments, 3, 210-224. https://doi.org/10.1215/21573689-2397024
Provoost, P., Braeckman, U., Van Gansbeke, D., Moodley, L., Soetaert, K., Middelburg, J. J., & Vanaverbeke, J. (2013). Modelling benthic oxygen consumption and benthic-pelagic coupling at a shallow station in the southern North Sea. Estuarine, Coastal and Shelf Science, 120, 1-11. https://doi.org/10.1016/j.ecss.2013.01.008
Kürten, B., Frutos, I., Struck, U., Painting, S. J., Polunin, N. V. C., & Middelburg, J. J. (2013). Trophodynamics and functional feeding groups of North Sea fauna: a combined stable isotope and fatty acid approach. Biogeochemistry, 113(1-3), 189-212. https://doi.org/10.1007/s10533-012-9701-8
Walraven, N., van Gaans, P. F. M., van der Veer, G., van Os, B. J. H., Klaver, G. T., Vriend, S. P., Middelburg, J. J., & Davies, G. R. (2013). Lithologically inherited variation in Pb isotope ratios in sedimentary soils in The Netherlands. Applied Geochemistry, 37, 228-241. https://doi.org/10.1016/j.apgeochem.2013.06.006
Other output
Hagens, M., Slomp, C., Meysman, F., Borges, A., & Middelburg, J. (2013). The influence of biogeochemical processes on the pH dynamics in the seasonally hypoxic saline Lake Grevelingen, The Netherlands. Geophysical Research Abstracts, 15, Article EGU2013-7084. http://adsabs.harvard.edu/abs/2013EGUGA..15.7084H
2012
Scholarly publications
Downing, J. A., Cole, J. J., Duarte, C. M., Middelburg, J. J., Melack, J. M., Prairie, Y. T., Kortelainen, P., Striegl, R. G., McDowell, W. H., & Tranvik, L. J. (2012). Global abundance and size distribution of streams and rivers. Inland Waters, 2, 229-236. https://doi.org/10.5268/IW-2.4.502
Evrard, V., Huettel, M., Cook, P. L. M., Soetaert, K., Heip, C. H. R., & Middelburg, J. J. (2012). Importance of phytodetritus and microphytobenthos for heterotrophs in a shallow subtidal sandy sediment. Marine Ecology Progress Series, 455, 13-31. https://doi.org/10.3354/meps09676
Pedrotti, M. L., Fiorini, S., Kerros, M.-E., Middelburg, J. J., & Gattuso, J.-P. (2012). Variable production of transparent exopolymeric particles by haploid and diploid life stages of coccolithophores grown under different CO2 concentrations. Journal of Plankton Research, 34(5), 388-398. https://doi.org/10.1093/plankt/fbs012
Woulds, C., Middelburg, J. J., & Cowie, G. L. (2012). Alteration of organic matter during infaunal polychaete gut passage and links to sediment organic geochemistry. Part I: Amino acids. Geochimica et Cosmochimica Acta, 77, 396-414. https://doi.org/10.1016/j.gca.2011.10.042
Oakes, J. M., Eyre, B. D., & Middelburg, J. J. (2012). Transformation and fate of microphytobenthos carbon in subtropical shallow subtidal sands: A 13C-labeling study. Limnology and Oceanography, 57(6), 1846-1856. https://doi.org/10.4319/lo.2012.57.06.1846
Veuger, B., van Oevelen, D., & Middelburg, J. J. (2012). Fate of microbial nitrogen, carbon, hydrolysable amino acids, monosaccharides, and fatty acids in sediment. Geochimica et Cosmochimica Acta, 83, 217-233. https://doi.org/10.1016/j.gca.2011.12.016
Braeckman, U., Provoost, P., Sabbe, K., Soetaert, K., Middelburg, J. J., Vincx, M., & Vanaverbeke, J. (2012). Temporal dynamics in the diet of two marine polychaetes as inferred from fatty acid biomarkers. Journal of Sea Research, 68, 6-19. https://doi.org/10.1016/j/seares.2011.11.003
de Kluijver, A., Yu, J., Houtekamer, M., Middelburg, J. J., & Liu, Z. (2012). Cyanobacteria as a carbon source for zooplankton in eutrophic Lake Taihu, China, measured by 13C labeling and fatty acid biomarkers. Limnology and Oceanography, 57(4), 1245-1254. https://doi.org/10.4319/lo.2012.57.4.1245
Dähnke, K., Moneta, A., Veuger, B., Soetaert, K., & Middelburg, J. J. (2012). Balance of assimilative and dissimilative nitrogen processes in a diatom-rich tidal flat sediment. Biogeosciences, 9, 4059-4070. https://doi.org/10.5194/bg-9-4059-2012
Van Colen, C., Rossi, F., Montserrat, F., Andersson, M. G. I., Gribsholt, B., Herman, P. M. J., Degraer, S., Vincx, M., Ysebaert, T., & Middelburg, J. J. (2012). Organism-sediment interactions govern post-hypoxia recovery of ecosystem functioning. PLoS One, 7(11), e49795. Article e49795. https://doi.org/10.1371/journal.pone.0049795
Professional publications
Reichart, G.-J., Lammers, M., Slomp, C. P., Wessels, W., Middelburg, J. B. M., Brinkhuis, H., Reumer, J. W. F., Kloosterboer, M., & van der Valk, A. E. (2012). Aarde in Evolutie : lerarenhandleiding. Universiteit Utrecht, Junior College Utrecht.
2011
Scholarly publications
Braeckman, U., Provoost, P., Moens, T., Soetaert, K., Middelburg, J. J., Vincx, M., & Vanaverbeke, J. (2011). Biological vs. physical mixing effects on benthic food web dynamics. PLoS One, 6(3), e18078. https://doi.org/10.1371/journal.pone.0018078
Fiorini, S., Middelburg, J. J., & Gattuso, J.-P. (2011). Testing the effects of elevated pCO2 on coccolithophores (Prymnesiophyceae): comparison between haploid and diploid life stages. Journal of Phycology, 47, 1281-1291.
Middelburg, J. J. (2011). Chemoautotrophy in the ocean. Geophysical Research Letters, 38, L24604-1-L24604-4. https://doi.org/10.1029/2011GL049725
Voss, M., Baker, A., Bange, H. W., Conley, D., Cornell, S., Deutsch, B., Engel, A., Ganeshram, R., Garnier, J., Heiskanen, A. S., Jickells, T., Lancelot, C., McQuatters-Gollop, A., Middelburg, J. J., Schiedek, D., & Slomp, C. P. (2011). Nitrogen processes in coastal and marine ecosystems. ENA European Nitrogen Assessment. In M. A. Sutton, C. M. Howard, J. W. Erisman, G. Billen, A. Bleeker, P. Grennfeldt, H. van Grinsven, & B. Grizzetti (Eds.), The European Nitrogen Assessment. Sources, effects and policy perspectives (pp. 147-176). Cambridge University Press.
Danovaro, R., Corinaldesi, C., Dell'Anno, A., Fuhrman, J. A., Middelburg, J. J., Noble, R. T., & Suttle, C. A. (2011). Marine viruses and global climate change. FEMS Microbiology Reviews, 35(6), 993-1034. https://doi.org/10.1111/j.1574-6976.2010.00258.x
Fiorini, S., Middelburg, J. J., & Gattuso, J.-P. (2011). Effects of elevated CO2 partial pressure and temperature on the coccolithophore Syracosphaera pulchra. Aquatic Microbial Ecology, 64(3), 221-232. https://doi.org/10.3354/ame01520
Gazeau, F., Gattuso, J.-P., Greaves, M., Elderfield, H., Peene, J., Heip, C. H. R., & Middelburg, J. J. (2011). Effect of carbonate chemistry alteration on the early embryonic development of the Pacific oyster (Crassostrea gigas). PLoS One, 6(8), e23010. https://doi.org/10.1371/journal.pone.0023010
van Duyl, F. C., Moodley, L., Nieuwland, G., van IJzerloo, L., van Soest, R. W. M., Houtekamer, M., Meesters, E. H., & Middelburg, J. J. (2011). Coral cavity sponges depend on reef-derived food resources: stable isotope and fatty acid constraints. Marine Biology, 158(7), 1653-1666. https://doi.org/10.1007/s00227-011-1681-z
Meysman, F. J. R., Boudreau, B. P., & Middelburg, J. J. (2011). When and why does bioturbation lead to diffusive mixing? Journal of Marine Research, 68(6), 881-920. https://doi.org/10.1357/002224010796673885
Van Engeland, T., Bouma, T. J., Morris, E. P., Brun, F. G., Peralta, G., Lara, M., Hendriks, I. E., Soetaert, K., & Middelburg, J. J. (2011). Potential uptake of dissolved organic matter by seagrasses and macroalgae. Marine Ecology Progress Series, 427, 71-81. https://doi.org/10.3354/meps09054
Moodley, L., Nigam, R., Ingole, B., Prakash Babu, C., Panchang, R., Nanajkar, M., Sivadas, S., van Breugel, P., van IJzerloo, L., Rutgers, R., Heip, C. H. R., Soetaert, K., & Middelburg, J. J. (2011). Oxygen minimum seafloor ecological (mal) functioning. Journal of Experimental Marine Biology and Ecology, 398(1-2), 91-100. https://doi.org/10.1016/j.jembe.2010.12.015
Laane, R. W. P. M., & Middelburg, J. J. (2011). Biogeochemistry, An Introduction. In E. Wolanski, D. McLusky, R. W. P. M. Laane, & J. J. Middelburg (Eds.), Biogeochemistry (pp. 1-5). (Treatise on Estuarine and Coastal Science; No. 5). Academic Press.
Koopmans, M., van Rijswijk, P., Martens, D., Egorova-Zachernyuk, T. A., Middelburg, J. J., & Wijffels, R. H. (2011). Carbon conversion and metabolic rate in two marine sponges. Marine Biology, 158(1), 9-20. https://doi.org/10.1007/s00227-010-1538-x
Van den Meersche, K., Soetaert, K., & Middelburg, J. J. (2011). Plankton dynamics in an estuarine plume: a mesocosm 13C and 15N tracer study. Marine Ecology Progress Series, 429, 29-43. https://doi.org/10.3354/meps09097
Rossi, F., & Middelburg, J. J. (2011). Intraspecific diet shift of Macoma balthica during community reassembly in an estuarine intertidal flat. Estuarine, Coastal and Shelf Science, 92(3), 496-501. https://doi.org/10.1016/j.ecss.2011.02.008
Professional publications
Heip, C. H. R., Middelburg, J. J., & Philippart, C. J. M. (2011). Functioning of Ecosystems at the Land–Ocean Interface. (Treatise on Estuarine and Coastal Science ed.) Academic Press. https://doi.org/10.1016/B978-0-12-374711-2.00701-4
Laane, R. W. P. M., & Middelburg, J. J. (2011). Biogeochemistry: A introduction. (Treatise on Estuarine and Coastal Science ed.) Academic Press.
2010
Scholarly publications
Van Frausum, J., Middelburg, J. J., Soetaert, K., & Meysman, F. J. R. (2010). Different proxies for the reactivity of aquatic sediments towards oxygen: A model assessment. Ecological Modelling, 221, 2054-2067.
Van Engeland, T., Soetaert, K., Knuijt, A., Laane, R. W. P. M., & Middelburg, J. J. (2010). Dissolved organic nitrogen dynamics in the North Sea: A time series analysis (1995 - 2005). Estuarine, Coastal and Shelf Science, 89, 31-42.
De Laender, F., van Oevelen, D., Soetaert, K., & Middelburg, J. J. (2010). Carbon transfer in herbivore- and microbial loop-dominated pelagic food webs in the southern Barents Sea during spring and summer. Marine Ecology Progress Series, 398, 93-107, doi: 10.3354/meps08335.
Hofmann, A. F., Soetaert, K., Middelburg, J. J., & Meysman, F. J. R. (2010). AquaEnv: An Aquatic Acid–Base Modelling Environment in R. Aquatic Geochemistry, 16(4), 507-546, doi: 10.1007/s10498-009-9084-1.
Meysman, F. J. R., Galaktionov, O. S., Glud, R. N., & Middelburg, J. J. (2010). Oxygen penetration around burrows and roots in aquatic sediments. Journal of Marine Research, 68(2), 309-336.
Zonneveld, K. A. F., Versteegh, G. J. M., Kasten, S., Eglinton, T. I., Emeis, K.-C., Huguet, C., Koch, B. P., de Lange, G. J., de Leeuw, J. W., Middelburg, J. J., Mollenhauer, G., Prahl, F. G., Rethemeyer, J., & Wakeham, S. G. (2010). Selective preservation of organic matter in marine environments; processes and impact on the sedimentary record. Biogeosciences, 7(2), 483-511.
Gazeau, F., Gattuso, J.-P., Dawber, C., Pronker, A. E., Peene, F., Peene, J., Heip, C. H. R., & Middelburg, J. J. (2010). Effect of ocean acidification on the early life stages of the blue mussel Mytilus edulis. Biogeosciences, 7(7), 2051-2060.
Sweetman, A. K., Middelburg, J. J., Berle, A. M., Bernardino, A. F., Schander, C., Demopoulos, A. W. J., & Smith, C. R. (2010). Impacts of exotic mangrove forests and mangrove deforestation on carbon remineralization and ecosystem functioning in marine sediments. Biogeosciences, 7(7), 2129-2145, doi: 10.5194/bg-7-2129-2010.
Guilini, K., van Oevelen, D., Soetaert, K., Middelburg, J. J., & Vanreusel, A. (2010). Nutritional importance of benthic bacteria for deep-sea nematodes from the Arctic ice margin: Results of an isotope tracer experiment. Limnology and Oceanography, 55(5), 1977-1989.
van Oevelen, D., Van den Meersche, K., Meysman, F. J. R., Soetaert, K., Middelburg, J. J., & Vézina, A. F. (2010). Quantifying food web flows using linear inverse models. Ecosystems, 13(1), 32-45. https://doi.org/10.1007/s10021-009-9297-6
Bahlmann, E., Bernasconi, S. M., Bouillon, S., Houtekamer, M., Korntheuer, M., Langenberg, F., Mayr, C., Metzke, M., Middelburg, J. J., Nagel, B., Struck, U., Voß, M., & Emeis, K. C. (2010). Performance evaluation of nitrogen isotope ratio determination in marine and lacustrine sediments: An inter-laboratory comparison. Organic Geochemistry, 41(1), 3-12, doi:10.1016/j.orggeochem.2009.05.008.
Fiorini, S., Gattuso, J.-P., van Rijswijk, P., & Middelburg, J. J. (2010). Coccolithophores lipid and carbon isotope composition and their variability related to changes in seawater carbonate chemistry. Journal of Experimental Marine Biology and Ecology, 394, 74-85.
Evrard, V., Soetaert, K., Heip, C. H. R., Huettel, M., Xenopoulos, M. A., & Middelburg, J. J. (2010). Carbon and nitrogen flows through the benthic food web of a photic subtidal sandy sediment. Marine Ecology Progress Series, 416, 1-16.
Woulds, C., Cowie, G., & Middelburg, J. J. (2010). A method for the quantitative detection of 13C labelled amino acids and aldoses in marine sediments and fauna. Organic Geochemistry, 41(1), 13-21.
De Laender, F., van Oevelen, D., Frantzen, S., Middelburg, J. J., & Soetaert, K. (2010). Seasonal PCB bioaccumulation in an arctic marine ecosystem: A model analysis incorporating lipid dynamics, food-web productivity and migration. Environmental Science and Technology, 44(1), 356-361.
Nisumaa, A.-M., Pesant, S., Bellerby, R. G. J., Delille, B., Middelburg, J. J., Orr, J. C., Riebesell, U., Tyrrell, T., Wolf-Gladrow, D., & Gattuso, J.-P. (2010). EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2, 167-175.
Boudreau, B. P., Middelburg, J. J., & Meysman, F. J. R. (2010). Carbonate compensation dynamics. Geophysical Research Letters, 37, L03603-doi:10.1029/2009GL041847.
Oakes, J. M., Eyre, B. D., Middelburg, J. J., & Boschker, H. T. S. (2010). Composition, production, and loss of carbohydrates in subtropical shallow subtidal sandy sediments: Rapid processing and long-term retention revealed by 13C-labeling. Limnology and Oceanography, 55(5), 2126-2138.
Provoost, P., van Heuven, S., Soetaert, K., Laane, R. W. P. M., & Middelburg, J. J. (2010). Seasonal and long-term changes in pH in the Dutch coastal zone. Biogeosciences, 7, 3869-3878.
Braeckman, U., Provoost, P., Gribsholt, B., Van Gansbeke, D., Middelburg, J. J., Soetaert, K., Vincx, M., & Vanaverbeke, J. (2010). Role of macrofauna functional traits and density in biogeochemical fluxes and bioturbation. Marine Ecology Progress Series, 399, 173-186.
De Laender, F., van Oevelen, D., Middelburg, J. J., & Soetaert, K. (2010). Uncertainties in ecological, chemical and physiological parameters of a bioaccumulation model: Implications for internal concentrations and tissue based risk quotients. Ecotoxicology and Environmental Safety, 73, 240-246.
De Laender, F., Soetaert, K., De Schamphelaere, K. A. C., Middelburg, J. J., & Janssen, C. R. (2010). Ecological significance of hazardous concentrations in a planktonic food web. Ecotoxicology and Environmental Safety, 73(3), 247-253.
De Laender, F., Soetaert, K., & Middelburg, J. J. (2010). Inferring chemical effects on carbon flows in aquatic food webs: Methodology and case study. Environmental Pollution, 158, 1775-1782.
Kennedy, H., Beggins, J., Duarte, C. M., Fourqurean, J. W., Holmer, M., Marba, N., & Middelburg, J. J. (2010). Seagrass sediments as a global carbon sink: Isotopic constraints. Global Biogeochemical Cycles, 24, GB4026, doi:10.1029/2010GB003848.
Boudreau, B. P., Middelburg, J. J., Hofmann, A. F., & Meysman, F. J. R. (2010). Ongoing transients in carbonate compensation. Global Biogeochemical Cycles, 24, GB4010, doi: 10.1029/2009GB003654.
de Kluijver, A., Soetaert, K., Schulz, K. G., Riebesell, U., Bellerby, R. G. J., & Middelburg, J. J. (2010). Phytoplankton-bacteria coupling under elevated CO2 levels: a stable isotope labelling study. Biogeosciences, 7, 3783-3797, doi:10.5194/bg-7-3783-2010.
Hofmann, A. F., Middelburg, J. J., Soetaert, K., Wolf-Gladrow, D. A., & Meysman, F. J. R. (2010). Proton cycling, buffering, and reaction stoichiometry in natural waters. Marine Chemistry, 121, 246-255.
Schouten, S., Middelburg, J. J., Hopmans, E. C., & Sinninghe Damsté, J. S. (2010). Fossilization and degradation of intact polar lipids in deep subsurface sediments: A theoretical approach. Geochimica et Cosmochimica Acta, 74, 3806-3814.
Zhang, L., Li, K., Liu, Z., & Middelburg, J. J. (2010). Sedimented cyanobacterial detritus as a source of nutrient for submerged macrophytes (Vallisneria spiralis and Elodea nuttallii): An isotope labeling experiment using 15N. Limnology and Oceanography, 55(5), 1912-1917.
Zhang, J., Gilbert, D., Gooday, A. J., Levin, L., Naqvi, S. W. A., Middelburg, J. J., Scranton, M., Ekau, W., Peña, A. S., Dewitte, B., Oguz, T., Monteiro, P. M. S., Urban, E., Rabalais, N. N., Ittekkot, V., Kemp, W. M., Ulloa, O., Elmgren, R., Escobar-Briones, E., & Van der Plas, A. K. (2010). Natural and human-induced hypoxia and consequences for coastal areas: synthesis and future development. Biogeosciences, 7(5), 1443-1467.
2009
Scholarly publications
Levin, L. A., Ekau, W., Gooday, A., Jorrisen, F., Middelburg, J. J., Naqvi, W., Neira, C., Rabalais, N., & Zhang, J. (2009). Effects of natural and human-induced hypoxia on coastal benthos. Biogeosciences, 6(10), 2063-2098. http://www.biogeosciences.net/6/2063/2009/bg-6-2063-2009.html
Bouillon, S., Abril, G., Borges, A. V., Dehairs, F., Govers, G., Hughes, H. J., Mercks, R., Meysman, F. J. R., Nyunja, J., Osburn, C., & Middelburg, J. B. M. (2009). Distribution, origin and cycling of carbon in the Tana River (Kenya): a dry season basin-scale survey from headwaters to the delta. Biogeosciences, 6, 2475-2493. http://www.biogeosciences.net/6/2475/2009/bg-6-2475-2009.pdf
Woulds, C., Andersson, J. H., Cowie, G. L., Middelburg, J. J., & Levin, L. A. (2009). 13C tracer studies on the short-term fate of organic carbon in marine sediments: comparing the Pakistan margin to other regions. Deep-Sea Research. Part II: topical studies in oceanography, 56(6-7), 393-402. http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VGC-4TW11W5-1&_user=3021443&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_acct=C000021878&_version=1&_urlVersion=0&_userid=3021443&md5=8cc22ae1cf134bc2cdb858b9449d3b67
Cook, P. L. M., van Oevelen, D., Soetaert, K., & Middelburg, J. J. (2009). Carbon and nitrogen cycling on intertidal mudflats of a temperate Australian estuary. IV. Inverse model analysis and synthesis. Marine Ecology Progress Series, 394, 35-48.
Dijkman, N. A., Boschker, H. T. S., Middelburg, J. J., & Kromkamp, J. C. (2009). Group-specific primary production based on stable-isotope labeling of phospholipid-derived fatty acids. Limnology and Oceanography: Methods, 7, 612-625. http://www.aslo.org/lomethods/free/2009/0612.html
Hofmann, A. F., Middelburg, J. J., Soetaert, K., & Meysman, F. J. R. (2009). pH modelling in aquatic systems with time-variable acid-base dissociation constants applied to the turbid, tidal Scheldt estuary. Biogeosciences, 6, 1539-1561. http://www.biogeosciences.net/6/1539/2009/bg-6-1539-2009.html
Gooday, A. J., Jorissen, F., Levin, L. A., Middelburg, J. J., Naqvi, S. W. A., Rabalais, N. N., Scranton, M., & Zhang, J. (2009). Historical records of coastal eutrophication-induced hypoxia. Biogeosciences, 6, 1707-1745. http://www.biogeosciences.net/6/1707/2009/bg-6-1707-2009.html
Vandewiele, S., Cowie, G., Soetaert, K., & Middelburg, J. J. (2009). Amino acid biogeochemistry and organic matter degradation state accross the Pakistan Margin Oxygen minimum zone. Deep-Sea Research. Part II: topical studies in oceanography, 56(6-7), 376-392.
Middelburg, J. J., & Levin, L. A. (2009). Coastal hypoxia and sediment biogeochemistry. Biogeosciences, 6, 1273-1293. http://www.biogeosciences.net/6/1273/2009/bg-6-1273-2009.html
Cox, T. J. S., Maris, T., Soetaert, K., Conley, D. J., van Damme, S., Meire, P., Middelburg, J. J., Vos, M., & Struyf, E. (2009). A macro-tidal freshwater ecosystem recovering from hypereutrophication: the Schelde case study. Biogeosciences, 6, 2935-2948.
2008
Scholarly publications
Vonk, J. A., Middelburg, J. J., Stapel, J., & Bouma, T. J. (2008). Dissolved organic nitrogen uptake by seagrasses. Limnology and Oceanography, 53(2), 542-548. https://doi.org/10.4319/lo.2008.53.2.0542
Hofmann, A., Soetaert, K., & Middelburg, J. J. (2008). Present nitrogen and carbon dynamics in the Scheldt estuary using a novel1-D model. Biogeosciences, 5(4), 981-1006.
Andersson, J. H., Woulds, C., Schwarz, M., Cowie, G. L., Levin, L. A., Soetaert, K., & Middelburg, J. J. (2008). Short-term fate of phytodetritus in sediments across the Arabian Sea Oxygen Minimum Zone. Biogeosciences, 5(1), 43-53.
Brion, N., Andersson, M. G. I., Elskens, M., Diaconu, C., Baeyens, W., Dehairs, F., & Middelburg, J. J. (2008). Nitrogen cycling, retention and export in a eutrophic temperate macrotidal estuary. Marine Ecology Progress Series, 357, 87-99.
Hofmann, A. F., Meysman, F. J. R., Soetaert, K., & Middelburg, J. J. (2008). A step-by-step procedure for pH model construction in aquatic systems. Biogeosciences, 5(1), 227-251.
Evrard, V., Cook, P. M. L., Veuger, B., Huettel, M., & Middelburg, J. J. (2008). Tracing incorporation and pathways of carbon and nitrogen in the microbial community of a photic subtidal sand. Aquatic Microbial Ecology, 53, 257-269.
Huguet, C., de Lange, G. J., Gustafsson, O., Middelburg, J. J., Sinninghe Damsté, J. S., & Schouten, S. (2008). Selective preservation of soil organic matter in oxidized marine sediments (Madeira Abyssal Plain). Geochimica et Cosmochimica Acta, 72, 6061-6068.
2007
Scholarly publications
Soetaert, K., Hoffman, A., Middelburg, J. J., Meysman, F. J. R., & Greenwood, J. (2007). The effect of biogeochemical processes on pH. Marine Chemistry, 105, 30-51.
Woulds, C., Cowie, G. L., Levin, L. A., Andersson, J. H., Middelburg, J. J., Vandewiele, S., Lamont, P. A., Larkin, K., Gooday, A., Schumacher, S., Whitcraft, C., Jeffreys, R., & Schwartz, M. (2007). Oxygen as a control on sea floor faunal communities and their roles in sedimentary organic matter cycling. Limnology and Oceanography, 52(4), 1698-1709.
Veuger, B., Middelburg, J. J., Boschker, H. T. S., & Houtekamer, M. (2007). Update of "Analysis of 15N incorporation in D-alanine: a new method for tracing bacteria N uptake" (Veuger et al. 2005, Limnol. Oceanogr. Methods 3: 230-240). Limnology and Oceanography: Methods, 5, 192-194.
Veuger, B., & Middelburg, J. J. (2007). Incorporation of nitrogen and carbon from urea and amino acids by bacteria and algae in intertidal sediment. Aquatic Microbial Ecology, 48, 35-46.
2006
Scholarly publications
Andersson, M. G. I., Brion, N., & Middelburg, J. J. (2006). Comparison of nitrifier activity versus growth in turbid, tidal estuary (Scheldt estuary in northern Europe). Aquatic Microbial Ecology, 42, 149-158.
Andersson, J. H., Middelburg, J. J., & Soetaert, K. (2006). Identifiability and uncertainty analysis of bio-irrigation. Journal of Marine Research, 64(3), 407-429.
Andersson, M. G. I., Van Rijswijk, P., & Middelburg, J. J. (2006). Uptake of dissolved inorganic nitrogen, urea and amino acids in the Scheldt estuary: a comparison of C and N uptake. Aquatic Microbial Ecology, 44, 303-315.
Veuger, B., van Oevelen, D., Middelburg, J. J., & Boschker, H. T. S. (2006). Fate of peptidoglycan in an intertidal sediment: an in situ 13C-labeling study. Limnology and Oceanography, 51(4), 1572-1580.
Gribsholt, B., Struyf, E., Tramper, A., Andersson, M., Brion, N., De Brabandere, L., van Damme, S., Meire, P., Middelburg, J. J., Dehairs, F., & Boschker, H. T. S. (2006). Ammonium transformation in a Belgian tidal freshwater marsh: an in situ 15N labelling study. Biogeochemistry, 80, 289-298.
Other output
Middelburg, J. J. (2006). Tussen Aarde en leven. Universiteit Utrecht.
2005
Scholarly publications
Veuger, B., Middelburg, J. J., Boschker, H. T. S., & Houtekamer, M. (2005). Analysis of 15N incorporation in D-alanine: a new method for tracing bacteria N uptake. Limnology and Oceanography: Methods, 3, 230-240.
Evrard, V., Bouma, T. J., & Middelburg, J. J. (2005). Nutrient dynamics of seagrass systems: on the importance of particulate organic matter and root systems. Marine Ecology Progress Series, 295, 49-55.
Moodley, L., Middelburg, J. J., Herman, P. M. J., Soetaert, K., & de Lange, G. J. (2005). Oxygenation and organic-matter preservation in marine sediments: Direct experimental evidence from ancient organic carbon-rich deposits. Geology, 33(11), 889-892.
Gribsholt, B., Boschker, H. T. S., Struyf, E., Andersson, M., Tramper, A., De Brabandere, L., van Damme, S., Brion, N., Meire, P., Dehairs, F., Middelburg, J. J., & Heip, C. H. R. (2005). Nitrogen processing in a tidal freshwater marsh: A whole ecosystem 15N labeling study. Limnology and Oceanography, 50(6), 1945-1959.
2004
Scholarly publications
Veuger, B., Middelburg, J. J., Boschker, H. T. S., Nieuwenhuize, J., van Rijswijk, P., Rochelle-Newall, E., & Navarro, N. (2004). Microbial uptake of dissolved organic and inorganic nitrogen in Randers fjord, Denmark. Estuarine, Coastal and Shelf Science, 61, 507-515.
Andersson, J. H., Wijsman, J. W. M., Herman, P. M. J., Middelburg, J. J., Soetaert, K., & Heip, C. H. R. (2004). Respiration patterns in the deep ocean. Geophysical Research Letters, 31.
1990
Scholarly publications
Middelburg, J. (1990). Early diagenesis and authigenic mineral formation in anoxic sediments of Kau Bay, Indonesia. [Doctoral thesis 1 (Research UU / Graduation UU), Universiteit Utrecht]. Faculteit Aardwetenschappen.
https://dspace.library.uu.nl/bitstream/handle/1874/315012/Middelburg_Jacobus_B_M_71_1990.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/315012/Middelburg_Jacobus_B_M_71_1990.pdf?sequence=1