Publicaties
2023
Wetenschappelijke publicaties
Song, Y., Spooren, J., Jongekrijg, C. D., Manders, E. HH., de Jonge, R., Pieterse, C. MJ., Bakker, P. AHM., & Berendsen, R. L. (2023). Seed tuber imprinting shapes the next-generation potato microbiome. (pp. 1-21). bioRxiv. https://doi.org/10.1101/2023.07.27.549298v1
Goossens, P., Spooren, J., Baremans, K. C. M., Andel, A., Lapin, D., Echobardo, N., Pieterse, C. M. J., Ackerveken, G. V. D., & Berendsen, R. L. (2023). Congruent downy mildew-associated microbiomes reduce plant disease and function as transferable resistobiomes. bioRxiv. https://doi.org/10.1101/2023.03.14.532520
2022
Wetenschappelijke publicaties
Vismans, G., van Bentum, S., Spooren, J., Song, Y., Goossens, P., Valls, J., Snoek, B. L., Thiombiano, B., Schilder, M., Dong, L., Bouwmeester, H. J., Pétriacq, P., Pieterse, C. M. J., Bakker, P. A. H. M., & Berendsen, R. L. (2022). Coumarin biosynthesis genes are required after foliar pathogen infection for the creation of a microbial soil-borne legacy that primes plants for SA-dependent defenses. Scientific Reports, 12(1), [22473]. https://doi.org/10.1038/s41598-022-26551-x
van Bentum, S., van Bekkum, P. J., Strijk, P. A., van Pelt, J. A., Bakker, P. A. H. M., Berendsen, R. L., & van der Vlugt, R. A. (2022). First report of Soybean Mosaic Virus in commercially grown soybean in the Netherlands. Plant Disease, 106(2), 775. https://doi.org/10.1094/PDIS-06-21-1181-PDN
Bakker, P., & Berendsen, R. (2022). The soil-borne ultimatum, microbial biotechnology and sustainable agriculture. Microbial Biotechnology, 15, 84-87.
2021
Wetenschappelijke publicaties
Montes-Osuna, N., Cabanás, C. G. L., Valverde-Corredor, A., Berendsen, R. L., Prieto, P., & Mercado-Blanco, J. (2021). Assessing the involvement of selected phenotypes of pseudomonas simiae PICF7 in olive root colonization and biological control of verticillium dahliae. Plants, 10(2), 1-23. [412]. https://doi.org/10.3390/plants10020412
Stringlis, I. A., Teixeira, P. J. P. L., Berendsen, R. L., Pieterse, C. M. J., & Zamioudis, C. (2021). Editorial: Beneficial Microbiota Interacting With the Plant Immune System. Frontiers in Plant Science, 12, 1-4. [698902]. https://doi.org/10.3389/fpls.2021.698902
Vismans, G., Spooren, J., Pieterse, C., Bakker, P., & Berendsen, R. (2021). Soil-borne legacies of disease in Arabidopsis thaliana. In L. C. Carvalhais, & P. G. Dennis (Eds.), The Plant Microbiome: Methods and Protocols (1 ed., pp. 209-218). (Methods in Molecular Biology; Vol. 2232). Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1040-4_17
Yu, K., Stringlis, I. A., van Bentum, S., de Jonge, R., Snoek, B. L., Pieterse, C. M. J., Bakker, P. A. H. M., & Berendsen, R. L. (2021). Transcriptome Signatures in Pseudomonas simiae WCS417 Shed Light on Role of Root-Secreted Coumarins in Arabidopsis-Mutualist Communication. Microorganisms, 9(3), [575]. https://doi.org/10.3390/microorganisms9030575
Pieterse, C. M. J., Berendsen, R. L., de Jonge, R., Stringlis, I. A., Van Dijken, A. J. H., Van Pelt, J. A., Van Wees, S. C. M., Yu, K., Zamioudis, C., & Bakker, P. A. H. M. (2021). Pseudomonas simiae WCS417: star track of a model beneficial rhizobacterium. Plant and Soil, 461(1-2), 245-263. https://doi.org/10.1007/s11104-020-04786-9
2020
Wetenschappelijke publicaties
Song, Y., Pieterse, C. M. J., Bakker, P. A. H. M., & Berendsen, R. L. (2020). Collection of sterile root exudates from foliar pathogen-inoculated plants. In L. C. Carvalhais, & P. G. Dennis (Eds.), The Plant Microbiome: Methods and Protocols (1 ed., pp. 305-317). (Methods in Molecular Biology; Vol. 2232). Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1040-4_23
Vismans, G., Spooren, J., Pieterse, C. M. J., Bakker, P. A. H. M., & Berendsen, R. L. (2020). Soil-Borne Legacies of Disease in Arabidopsisthaliana. In The Plant Microbiome (pp. 209-218). (Methods in Molecular Biology book series; Vol. 2232). Springer. https://doi.org/10.1007/978-1-0716-1040-4_17,
https://dspace.library.uu.nl/bitstream/handle/1874/414703/Vismans2021_Protocol_Soil_BorneLegaciesOfDiseaseInA.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/414703/Vismans2021_Protocol_Soil_BorneLegaciesOfDiseaseInA.pdf?sequence=1
Bakker, P. A. H. M., Berendsen, R. L., Van Pelt, J. A., Vismans, G., Yu, K., Li, E., Van Bentum, S., Poppeliers, S. W. M., Sanchez Gil, J. J., Zhang, H., Goossens, P., Stringlis, I. A., Song, Y., de Jonge, R., & Pieterse, C. M. J. (2020). The soil-borne identity and microbiome-assisted agriculture: Looking back to the future. Molecular Plant, 13(10), 1394-1401. https://doi.org/10.1016/j.molp.2020.09.017
2019
Wetenschappelijke publicaties
Yu, K., Liu, Y., Tichelaar, R., Savant, N., Lagendijk, E., van Kuijk, S. J. L., Stringlis, I. A., van Dijken, A. J. H., Pieterse, C. M. J., Bakker, P. A. H. M., Haney, C. H., & Berendsen, R. L. (2019). Rhizosphere-associated Pseudomonas suppress local root immune responses by gluconic acid-mediated lowering of environmental pH. Current Biology, 29, 3913-3920. https://doi.org/10.1016/j.cub.2019.09.015
Stringlis, I., Zamioudis, C., Berendsen, R. L., Bakker, P. A. H. M., & Pieterse, C. M. J. (2019). Type III secretion system of beneficial rhizobacteria Pseudomonas simiae WCS417 and Pseudomonas defensor WCS374. Frontiers in Microbiology, 10, [1631]. https://doi.org/10.3389/fmicb.2019.01631
Yu, K., Pieterse, C. M. J., Bakker, P. A. H. M., & Berendsen, R. L. (2019). Beneficial microbes going underground of root immunity. Plant Cell and Environment, 42(10), 2860-2870. https://doi.org/10.1111/pce.13632
2018
Wetenschappelijke publicaties
Yuan, J., Zhao, J., Wen, T., Zhao, M., Li, R., Goossens, P., Huang, Q., Bai, Y., Vivanco, J. M., Kowalchuk, G. A., Berendsen, R. L., & Shen, Q. (2018). Root exudates drive the soil-borne legacy of aboveground pathogen infection. Microbiome, 6(1), [156]. https://doi.org/10.1186/s40168-018-0537-x
Stringlis, I., Yu, K., Feussner, K., de Jonge, R., Van Bentum, S., van Verk, M. C., Berendsen, R. L., Bakker, P. A. H. M., Feussner, I., & Pieterse, C. M. J. (2018). MYB72-dependent coumarin exudation shapes root microbiome assembly to promote plant health. Proceedings of the National Academy of Sciences of the United States of America, 115(22), 5213-5222. https://doi.org/10.1073/pnas.1722335115
Berendsen, R. L., Vismans, G., Yu, K., Song, Y., de Jonge, R., Burgman, W. P., Burmølle, M., Herschend, J., Bakker, P. A. H. M., & Pieterse, C. M. J. (2018). Disease-induced assemblage of a plant-beneficial bacterial consortium. ISME Journal, 12, 1496–1507. https://doi.org/10.1038/s41396-018-0093-1
Bakker, P. A. H. M., Pieterse, C. M. J., de Jonge, R., & Berendsen, R. L. (2018). The Soil-Borne Legacy. Cell, 172(6), 1178-1180. https://doi.org/10.1016/j.cell.2018.02.024
2016
Wetenschappelijke publicaties
Pieterse, C. M. J., de Jonge, R., & Berendsen, R. L. (2016). The soil-borne supremacy. Trends in Plant Science, 21, 171-172. https://doi.org/10.1016/j.tplants.2016.01.018
2015
Wetenschappelijke publicaties
Staicu, L. C., Ackerson, C. J., Cornelis, P., Ye, L., Berendsen, R. L., Hunter, W. J., Noblitt, S. D., Henry, C. S., Cappa, J. J., Montenieri, R. L., Wong, A. O., Musilova, L., Sura-de Jong, M., van Hullebusch, E. D., Lens, P. N. L., Reynolds, R. J. B., & Pilon-Smits, E. A. H. (2015). Pseudomonas moraviensis subsp. stanleyae, a bacterial endophyte of hyperaccumulator Stanleya pinnata, is capable of efficient selenite reduction to elemental selenium under aerobic conditions. Journal of Applied Microbiology, 119(2), 400-410. https://doi.org/10.1111/jam.12842
https://dspace.library.uu.nl/bitstream/handle/1874/329445/Staicu.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/329445/Staicu.pdf?sequence=1
Robroek, B. J. M., Jassey, V. E. J., Kox, M. A. R., Berendsen, R. L., Mills, R. E., Meima-Franke, M., Puissant, J., Cécillon, L., Bakker, P. A. H. M., & Bodelier, P. L. E. (2015). Peatland vascular plant functional types affect methane dynamics by altering microbial community structure. Journal of Ecology, 103(4), 925–934. https://doi.org/10.1111/1365-2745.12413
https://dspace.library.uu.nl/bitstream/handle/1874/329441/Robroek.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/329441/Robroek.pdf?sequence=1
Berendsen, R. L., van Verk, M. C., Stringlis, I. A., Zamioudis, C., Tommassen, J., Pieterse, C. M. J., & Bakker, P. A. H. M. (2015). Unearthing the genomes of plant-beneficial Pseudomonas model strains WCS358, WCS374 and WCS417. BMC Genomics, 16, [539]. https://doi.org/10.1186/s12864-015-1632-z
2014
Wetenschappelijke publicaties
Ye, L., Hildebrandt, F., Ballet, S., Laus, M. S., Berendsen, R., & Cornelis, P. (2014). Draft Genome Sequence Analysis of a Pseudomonas putida W15Oct28 Strain with Antagonistic Activity to Gram-Positive and Pseudomonas sp. Pathogens. PLoS One, 9(11), 1-14. [e110038]. https://doi.org/10.1371/journal.pone.0110038
Pieterse, C. M. J., Zamioudis, C., Berendsen, R. L., Weller, D. M., van Wees, S. C. M., & Bakker, P. A. H. M. (2014). Induced systemic resistance by beneficial microbes. Annual Review of Phytopathology, 52, 347-375. https://doi.org/10.1146/annurev-phyto-082712-102340
2013
Wetenschappelijke publicaties
Berendsen, R. L., Pieterse, C. M. J., Bakker, P. A. H. M., & van Verk, M. (2013). De genoomsequentie van drie Pseudomonas-stammen uit de WCS-collectie. Gewasbescherming, 44(3), 82.
https://dspace.library.uu.nl/bitstream/handle/1874/387856/de_genoomsequentie.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/387856/de_genoomsequentie.pdf?sequence=1
Berendsen, R. L., Kalkhove, S. I. C., Lugones, L. G., Baars, J. J., Wösten, H. A. B., & Bakker, P. A. H. M. (2013). Effects of the mushroom-volatile 1-octen-3-ol on dry bubble disease. Applied Microbiology and Biotechnology, 97(12), 5535-5543.
Bakker, P. A. H. M., Berendsen, R. L., Doornbos, R. F., Wintermans, P. C. A., & Pieterse, C. M. J. (2013). The rhizospere revisited: root microbiomics. Frontiers in Plant Science, 4, 165. https://doi.org/10.3389/fpls.2013.00165
Berendsen, R. L., Schrier, N., Kalkhove, S. I. C., Lugones, L. G., Baars, J. J. P., Zijlstra, C., de Weerdt, M., Wösten, H. A. B., & Bakker, P. A. H. M. (2013). Absence of induced resistance in Agaricus bisporus against Lecanicillium fungicola. Antonie van Leeuwenhoek International Journal of General and Molecular Microbiology, 103, 539-550. https://doi.org/10.1007/s10482-012-9836-6
Bakker, P. A. H. M., Doornbos, R. F., Zamioudis, C., Berendsen, R. L., & Pieterse, C. M. J. (2013). Induced systemic resistance and the rhizosphere microbiome. Plant Pathology, 29, 136-143. https://doi.org/10.5423/PPJ.SI.07.2012.0111
Overige resultaten
Bakker, P. A. H. M., Berendsen, R. L., Doornbos, R. P., & Pieterse, C. M. J. (2013). Exploiting the rhizosphere microbiome to improve crop production. Paper presented at 12th Symposium on Bacterial Genetics and Ecology.
Berendsen, R. L., van Verk, M. C., Pieterse, C. M. J., & Bakker, P. A. H. M. (2013). Genetic comparison of the ISR eliciting WCS-strains. Paper presented at Pseudomonas Conference 2013.
Zamioudis, C., Stringlis, I., Berendsen, R. L., van Wees, S. C. M., Bakker, P. A. H. M., & Pieterse, C. M. J. (2013). Induced systemic resistance triggered by beneficial microbes. Paper presented at Unknown event.
2012
Wetenschappelijke publicaties
Berendsen, R. L., Pieterse, C. M. J., & Bakker, P. A. H. M. (2012). The rhizosphere microbiome and plant health. Trends in Plant Science, 17, 478-486. https://doi.org/10.1016/j.tplants.2012.04.001
Berendsen, R. L., Kalkhove, S. I. C., Lugones, L. G., Baars, J. J. P., & Wösten, H. A. B. (2012). Effects of fluorescent Pseudomonas spp. isolated from mushroom cultures on Lecanicillium fungicola. Biological Control, 63(2), 210-221. https://doi.org/10.1016/j.biocontrol.2012.07.012
Berendsen, R. L., Kalkhove, S. I. C., Lugones, L. G., Wösten, H. A. B., & Bakker, P. A. H. M. (2012). Germination of Lecanicillium fungicola in the mycosphere of Agaricus bisporus. Environmental Microbiology Reports, 4(2), 227-233. https://doi.org/10.1111/j.1758-2229.2011.00325.x
Overige resultaten
Bakker, P. A. H. M., Doornbos, R. F., Berendsen, R. L., & Pieterse, C. M. J. (2012). Pseudomonas-mediated induced systemic resistance, what is in it for the bacteria. Paper presented at IS-MPMI 2012 XV International Congress, Kyoto, Japan.
Bakker, P. A. H. M., Berendsen, R. L., & Pieterse, C. M. J. (2012). Induced systemic resistance and the rhizosphere microbiome. Paper presented at 28th new Phytologisht Symposium on Functions and ecology of the Plant Microbiome, Rhodes, Greece.
Bakker, P. A. H. M., Berendsen, R. L., Doornbos, R. F., Zamioudis, C., & Pieterse, C. M. J. (2012). Effects of induced resistance on the rhizosphere microbiome. Paper presented at Annual meeting of teh Spanisch Phytopathological Society, Malaga, Spain.
Berendsen, R. L., Pieterse, C. M. J., & Bakker, P. A. H. M. (2012). Induced systemic resisstance and rhizosphere colonization by Pseudomonas fluorescens. Paper presented at 28th New Phytologist Symposium on Functions and Ecology of the Plant Microbiome, Rhodes.
2011
Wetenschappelijke publicaties
Berendsen, R. L. (2011). Dry bubble disease of the white button mushroom. Ecology and control of Lecanicillium fungicola. [Doctoral thesis 1 (Research UU / Graduation UU), Utrecht University]. Utrecht University.
https://dspace.library.uu.nl/bitstream/handle/1874/209109/berendsen.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/209109/berendsen.pdf?sequence=1
Overige resultaten
Berendsen, R. L., Kalkhove, S. I. C., Lugones, L. G., Wösten, H. A. B., & Bakker, P. A. H. M. (2011). Control and ecology of dry bubble disease of the white button mushrooms. Paper presented at EPS automn school Host-microbe interactions, Wageningen.
2010
Wetenschappelijke publicaties
Berendsen, R. L., Baars, J. J. P., Kalkhove, S. I. C., Lugones, L. G., Wösten, H. A. B., & Bakker, P. A. H. M. (2010). Pathogen profile: Lecanicillium fungicola, causal agent of dry bubble disease in white-button mushroom. Molecular Plant Pathology, 11, 585-595. https://doi.org/10.1111/j.1364-3703.2010.00627.x
Overige resultaten
Berendsen, R. L., Kalkhove, S. I. C., Baars, J. J. P., Lugones, L. G., Wosten, H. A. B., & Bakker, P. A. H. M. (2010). Microbial inhibition of Lecanicillium fungicola in thr mycosphere of Agaricus bisporus.. Paper presented at 13th International Symposium on Microbial Ecology, Seattle, USA.
2009
Wetenschappelijke publicaties
Berendsen, R. L., Baars, J., Kalkhove, S., Wadman, M. W., Lugones, L. G., Wösten, H. A. B., & Bakker, P. A. H. M. (2009). Selection of Pseudomonas strains that are antagonistic to Verticillium fungicola, the causal agent of dry bubble disease in Agaricus bisporus. In B. Duffy, M. Maurhofer, C. Keel, C. Gessler, Y. Elad, & S. Kiewnick (Eds.), Molecular tools for understanding and improving biocontrol. (pp. 32). (WPRS Bulletin; No. 43). IOBC.
2008
Overige resultaten
Berendsen, R. L., & Bakker, P. A. H. M. (2008). Selection of Pseudomonas strains that are antagonistic to Verticillium fungicola, the causal agent of dry bubble disease in Agaricus bisporus.. 44. Abstract from Unknown event, Asilomar, USA.