Medewerkers Bètawetenschappen

Lutz, Martin & Kroon - Batenburg, Louise (28-06-2018). Order-Disorder in Diaquobis(salicylato)copper(II) Revisited. Croatica Chemica Acta, 91 (2), (pp. 289-298).

Yang, Shenyu, Yan, Yun, Huang, Jianbin, Petukhov, Andrei V., Kroon - Batenburg, Loes M. J., Drechsler, Markus, Zhou, Chengcheng, Tu, Mei, Granick, Steve & Jiang, Lingxiang (20-06-2017). Giant capsids from lattice self-assembly of cyclodextrin complexes. Nature Communications, 8.

Kroon - Batenburg, Louise, Helliwell, John R., Mcmahon, Brian & Terwilliger, Thomas C. (01-01-2017). Raw diffraction data preservation and reuse - overview, update on practicalities and metadata requirements. IUCrJ, 4 (1), (pp. 87-99) (13 p.).

Helliwell, John R., Mcmahon, Brian, Guss, J. Mitchell & Kroon - Batenburg, Louise (01-11-2017). The science is in the data. IUCrJ, 4 (6), (pp. 714-722) (9 p.).

Helliwell, John R., Tanley, Simon W. M., Schreurs, Antoine M. M. & Kroon - Batenburg, Louise (04-06-2016). Cisplatin coordination chemistry determination at hen egg white lysozyme His15 with ligand distances and angles, and their standard uncertainties, and also reporting a split occupancy effect. arXiv.org, 1606.01372. 10 pages. One figure with two stereos and two further separate (identical to the stereos) figures with atom labels. This arXiv article is the first part of a Data Review.

Tanley, Simon W. M., Schreurs, Antoine M. M., Kroon - Batenburg, Louise & Helliwell, John R. (01-03-2016). Re-refinement of 4g4a: room-temperature X-ray diffraction study of cisplatin and its binding to His15 of HEWL after 14 months chemical exposure in the presence of DMSO. Acta Crystallographica Section F:Structural Biology Communications, 72 (3), (pp. 253-254).

Tanley, Simon W. M., Schreurs, Antoine M. M., Kroon - Batenburg, Louise & Helliwell, John R. (01-03-2016). Re-refinement of 4xan: hen egg-white lysozyme with carboplatin in sodium bromide solution. Acta Crystallographica Section F:Structural Biology Communications, 72 (3), (pp. 251-252) (2 p.).

Kroon-Batenburg, L.M.J., Schreurs, A.M.M., Ravelli, R.G. & Gros, P. (2015). Accounting for partiality in serial crystallography using ray-tracing principles. Acta Crystallographica Section D: Biological Crystallography, 71 (9), (pp. 1799-1811).

Kroon-Batenburg, L.M.J., Tanley, S.W.M., Diederichs, Kay, Levy, C., Schreurs, A.M.M. & Helliwell, J.R. (2015). Response from Tanley et al. to Crystallography and chemistry should always go together: a cautionary tale of protein complexes with cisplatin and carboplatin. Acta Crystallographica Section D: Biological Crystallography, 71 (9), (pp. 1982-1983).

Tanley, S.W.M., Diederichs, K., Kroon-Batenburg, L.M.J., Schreurs, A.M.M. & Helliwell, J.R. (2014). Carboplatin binding to a model protein in non-NaCl conditions to eliminate partial conversion to cisplatin, and the use of different criteria to choose the resolution limit. IUCrJ, in press (14 p.).

Tanley, Simon W M, Diederichs, Kay, Kroon - Batenburg, Louise, Levy, Colin, Schreurs, Antoine M M & Helliwell, John R. (01-01-2014). Carboplatin binding to histidine. Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 70 (9), (pp. 1135-1142) (8 p.).

Kroon - Batenburg, Louise & Helliwell, John R. (01-01-2014). Experiences with making diffraction image data available - What metadata do we need to archive?. Acta Crystallographica Section D: Biological Crystallography, 70 (10), (pp. 2502-2509) (8 p.).

Elgersma, Ronald C., Kroon - Batenburg, Louise, Posthuma, George, Meeldijk, Johannes D., Rijkers, Dirk T S & Liskamp, Rob M J (17-12-2014). PH-controlled aggregation polymorphism of amyloidogenic Aβ (16-22) - Insights for obtaining peptide tapes and peptide nanotubes, as function of the N -terminal capping moiety. European Journal of Medicinal Chemistry, 88, (pp. 55-65) (11 p.).

Nieuwland, M., Ruizendaal, L., Brinkmann, A., Kroon-Batenburg, L.M.J., van Hest, J.C.M. & Löwik, D.W.P.M. (2013). A structural study of the self-assembly of a palmitoyl peptide amphiphile. Faraday Discussions of the Chemical Society, 166, (pp. 361-379) (19 p.).

Tanley, S.W.M., Schreurs, A.M.M., Helliwell, J.R. & Kroon-Batenburg, L.M.J. (2013). Experience with exchange and archiving of raw data: comparison of data from two diffractometers and four software packages on a series of lysozyme crystals. Journal of Applied Crystallography, 46 (1), (pp. 108-119) (12 p.).

Tanley, S.W.M., Diederichs, K., Kroon-Batenburg, L.M.J., Schreurs, A.M.M. & Helliwell, J.R. (2013). Experiences with archived raw diffraction images data: capturing cisplatin after chemical conversion of carboplatin in high salt conditions for a protein crystal. Journal of Synchrotron Radiation, 20, (pp. 880-883) (4 p.).

Beringer, D.X. & Kroon-Batenburg, L.M.J. (01-02-2013). The structure of the FnI-EGF-like tandem domain of coagulation factor XII solved using SIRAS. Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 69 (2), (pp. 94-102) (9 p.).

Beringer, D.X., Fischer, M.J.E., Meeldijk, J.D., van Donselaar, E.G., de Mol, N.J. & Kroon-Batenburg, L.M.J. (2013). Tissue-type plasminogen activator binds to Abeta and AIAPP amyloid fibrils with multiple domains. Amyloid : the international journal of experimental and clinical investigation : the official journal of the International Society of Amyloidosis, 20 (2), (pp. 113-121) (9 p.).

Petit, A., Muller, B., Bruin, P., Meyboom, R., Piest, M., Kroon-Batenburg, L.M.J., de Leede, L.G., Hennink, W.E. & Vermonden, T. (2012). Modulating rheological and degradation properties of temperature-responsive gelling systems composed of blends of PCLA-PEG-PCLA triblock copolymers and their fully hexanoyl-capped derivatives. Acta Biomaterialia, 8 (12), (pp. 4260-4267) (8 p.).

Tanley, S.W.M., Schreurs, A.M.M., Kroon-Batenburg, L.M.J. & Helliwell, J.R. (2012). Room-temperature X-ray diffraction studies of cisplatin and carboplatin binding to His15 of HEWL after prolonged chemical exposure. Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 68 (11), (pp. 1300-1306) (7 p.).

Tanley, S.W.M., Schreurs, A.M.M., Kroon-Batenburg, L.M.J., Meredith, J., Prendergast, R., Walsh, D., Bryant, P., Levy, C. & Helliwell, J.R. (2012). Structural studies of the effect that dimethyl sulfoxide has on cisplatin and carboplatin binding to histidine in a protein. Acta Crystallographica Section D: Biological Crystallography, 68 (5), (pp. 601-612) (12 p.).

Li, L., Wölfel, A., Schönleber, A., Mondal, S., Schreurs, A.M.M., Kroon-Batenburg, L.M.J. & van Smaalen, S. (2011). Modulated anharmonic ADPs are intrinsic to aperiodic crystals: a case study on incommensurate Rb2ZnCl4. Acta Crystallographica Section B: Structural Science, 67 (3), (pp. 205-217) (13 p.).

Porta, J., Lovelace, J.J., Schreurs, A.M.M., Kroon-Batenburg, L.M.J. & Borgstahl, G.E.O. (2011). Processing incommensurately modulated protein diffraction data with Eval15. Acta Crystallographica Section D: Biological Crystallography, 67 (7), (pp. 628-638) (11 p.).

Schreurs, A.M.M., Xian, X. & Kroon-Batenburg, L.M.J. (2010). EVAL15: a diffraction data integration method based on ab initio predicted profiles. Journal of Applied Crystallography, 43 (1), (pp. 70-82) (13 p.).

van de Manakker, F., Kroon-Batenburg, L.M.J., Vermonden, T., van Nostrum, C.F. & Hennink, W.E. (2010). Supramolecular hydrogels formed by ß-cyclodextrin self-association and host–guest inclusion complexes. Soft Matter, 6, (pp. 187-194) (8 p.).

Bouma, B., Maas, C. (Coen), Kroon-Batenburg, L.M.J., Kranenburg, O., Wu, Y. & Gebbink, M.F.B.G. (01-07-2009). Fibrin in blood clots forms natural amyloid. Journal of Thrombosis and Haemostasis, 7 (S2), (pp. 700) (1 p.).

Bult, W., Seevinck, P.R., Krijger, G.C., Visser, T., Kroon-Batenburg, L.M.J., Bakker, C.J.G., Hennink, W.E., van het Schip, A.D. & Nijsen, J.F.W. (2009). Microspheres with Ultrahigh Holmium Content for Radioablation of Malignancies. Pharmaceutical Research, 26 (6), (pp. 1371-1378) (8 p.). ISI:000265834600009.

Teertstra, W.R., van der Velden, G.J., de Jong, J.F., Kruijtzer, J.A.W., Liskamp, R.M.J., Kroon-Batenburg, L.M.J., Mueller, W.H., Gebbink, M.F.B.G. & Woesten, H.A.B. (2009). The filament-specific rep1-1 repellent of the phytopathogen ustilago maydis forms functional surface-active amyloid-like fibrils. Journal of Biological Chemistry, 284, (pp. 9153-9159) (7 p.).

van Kuik, J.A., Vincent, S.J.F., Leeflang, B.R., Kroon-Batenburg, L.M.J. & Kamerling, J.P. (2006). Conformational analysis in aqueous solution and estimation of the persistence length of exopolysaccharides produced by Lactobacillus helveticus Lh59 and Streptococcus macedonicus Sc136. Canadian Journal of Chemistry, 84 (4), (pp. 730-742) (13 p.).

Leeflang, B.R., van Kuik, J.A. & Kroon-Batenburg, L.M.J. (2006). Oligosaccharides and cellulose crystal surfaces: computer simulations. ACS Symposium Series, 930, (pp. 133-155) (23 p.).

Sparr, E.M., Ganchev, D.N., Snel, M.M.E., Ridder, A.N.J.A., Kroon-Batenburg, L.M.J., Chupin, V.V., Rijkers, D.T.S., Killian, J.A. & de Kruijff, B. (2005). Molecular organization in striated domains induced by transmembrane alpha-helical peptides in dipalmitoyl phosphatidylcholine bilayers. Biochemistry, 44, (pp. 2-10) (9 p.).

Duisenburg, A.J.M., Kroon-Batenburg, L.M.J. & Schreurs, A.M.M. (2003). An intensity evaluation method: EVAL-14. Journal of Applied Crystallography, 36, (pp. 220-229) (10 p.).

Bouma, B., Kroon-Batenburg, L.M.J., Wu, Y.P., Brunjes, B., Posthuma, G., Kranenburg, O.W., de Groot, P.G., Voest, E.E. & Gebbink, M.F.B.G. (2003). Glycation induces formation of amyloid cross-beta structure in albumin. Journal of Biological Chemistry, 278 (43), (pp. 41810-41819) (10 p.).

Kranenburg, O.W., Kroon-Batenburg, L.M.J., Reijerkerk, A., Wu, Y.P., Voest, E.E. & Gebbink, M.F.B.G. (2003). Recombinant endostatin forms amyloid fibrils that bind and are cytotoxic to murine neuroblastoma cells in vitro. FEBS Letters, 539, (pp. 149-155) (7 p.).

Lommerse, J.P.M., van Rooijen, J.J.M., Kroon-Batenburg, L.M.J., Kamerling, J.P. & Vliegenthart, J.F.G. (2002). Conformational analysis of two xylose-containing N-glycans in aqueous solution by using 1H NMR ROESY and NOESY spectroscopy in combination with MD simulations. Carbohydrate Research, 337, (pp. 2279-2299) (21 p.).

Nijsen, J.F.W., Van Het Schip, A.D., Van Steenbergen, M.J., Zielhuis, S.W., Kroon-Batenburg, L.M.J., Van De Weert, M., Van Rijk, P.P. & Hennink, W.E. (15-04-2002). Influence of neutron irradiation on holmium acetylacetonate loaded poly(L-lactic acid) microspheres. Biomaterials, 23 (8), (pp. 1831-1839) (9 p.).

de Jong, S.J., van Nostrum, C.F., Kroon-Batenburg, L.M.J., Kettenes-van den Bosch, J.J. & Hennink, W.E. (2002). Oligolactate-grafted dextran hydrogels: detection of stereocomplex crosslinks by X-ray diffraction. Journal of Applied Polymer Science, 86, (pp. 289-293) (5 p.).

Kranenburg, O.W., Bouma, B.N., Kroon-Batenburg, L.M.J., Reijerkerk, A., Wu, Y.P., Voest, E.E. & Gebbink, M.F.B.G. (2002). Tissue-type plasminogen activator is a multiligand cross-beta structure receptor. Current Biology, 12, (pp. 1833-1839) (7 p.).

Nijsen, J.F.W., van Steenbergen, M.J., Kooijman, H., Talsma, H., Kroon-Batenburg, L.M.J., van de Weert, M., van Rijk, P.P., de Witte, A., van het Schip, A.D. & Hennink, W.E. (2001). Characterization of poly (L-lactic acid) microspheres loaded with holmium aceylacetonate. Biomaterials, 22, (pp. 3073-3081) (9 p.).

Nijsen, J.F.W., Van Steenbergen, M.J., Kooijman, H., Talsma, H., Kroon-Batenburg, L.M.J., Van De Weert, M., Van Rijk, P.P., De Witte, A., Van Het Schip, A.D. & Hennink, W.E. (15-11-2001). Characterization of poly(L-lactic acid) microspheres loaded with holmium acetylacetonate. Biomaterials, 22 (22), (pp. 3073-3081) (9 p.).

Kroon-Batenburg, L.M.J., Spieser, S.A.H., Kroon, J., Ramzi, M. & Vroege, G.J. (2001). New insights in the structure of cellulose: solid state, accessibility and solvent interactions - a model for the cellulose/phosphoric acid system. Das Papier, T71 (IPW 4/2001), (pp. 3-8) (6 p.).

Kroon-Batenburg, L.M.J. & Kroon, J. (05-01-1997). The crystal and molecular structures of cellulose I and II. Glycoconjugate Journal, 14 (5), (pp. 677-690) (14 p.).

Lommerse, J.P.M., Kroon-Batenburg, L.M.J., Kamerling, J.P. & Vliegenthart, J.F.G. (16-12-1995). Conformational analysis of the xylose-containing N-glycan of pineapple stem bromelain as part of the intact glycoprotein. Biochemistry, 34 (25), (pp. 8196-8206) (11 p.).

Lommerse, J.P., Kroon-Batenburg, L.M., Kroon, J., Kamerling, J.P. & Vliegenthart, J.F. (01-07-1995). Conformations and internal mobility of a glycopeptide derived from bromelain using molecular dynamics simulations and NOESY analysis. Journal of Biomolecular NMR, 6 (1), (pp. 79-94) (16 p.).

Banic, Z., Kojic-Prodic, B., Kroon-Batenburg, L. & Keglevic, D. (16-12-1994). Conformational analysis and computer modelling of muramic acid δ-lactam structures. Carbohydrate Research, 259 (2), (pp. 159-174) (16 p.).

Kroon, J., Kroon-Batenburg, L. M. J., Leeflang, B. R. & Vliegenthart, J. F. G. (01-06-1994). Intramolecular versus intermolecular hydrogen bonding in solution. Journal of Molecular Structure, 322 (1), (pp. 27-31).

Kroon-Batenburg, L.M.J., Kroon, J., Leeflang, B.R. & Vliegenthart, J.F.G. (01-06-1993). Conformational analysis of methyl β-cellobioside by ROESY NMR spectroscopy and MD simulations in combination with the CROSREL method. Carbohydrate Research, 245 (1), (pp. 21-42) (22 p.).

Leeflang, B.R., Vliegenthart, J.F.G., Kroon-Batenburg, L.M.J., Van Eijck, B.P. & Kroon, J. (01-06-1992). A1H-NMR and MD study of intramolecular hydrogen bonds in methyl β-cellobioside. Carbohydrate Research, 230 (1), (pp. 41-61) (21 p.).

Kroon-Batenburg, L.M.J. & Kroon, J. (16-12-1990). Solvent effect on the conformation of the hydroxymethyl group established by molecular dynamics simulations of methyl-β-D-glucoside in water. Biopolymers, 29 (8-9), (pp. 1243-1248) (6 p.).

Breg, J., Kroon-Batenburg, L.M.J., Strecker, G., Montreuil, J. & Vliegenthart, J.F.G. (12-07-1989). Conformational analysis of the sialylα(2→3/6)N-acetyllactosamine structural element occurring in glycoproteins, by two-dimensional NOE 1H-NMR spectroscopy in combination with energy calculations by hard-sphere exo-anomeric and molecular mechanics force-field with hydrogen-bonding potential. Biochemistry International, 178 (3), (pp. 727-739) (13 p.).