Computational tools & resources:

ggPlantmap is an open-source R package with the goal of facilitating the generation of informative ggplot maps from plant images to explore quantitative cell-type specific data. When combined with external quantitative data, ggPlantmap can be used for the visualization and displaying of spatial profiles in distinct parts/cells of the plant.

Additional code and data resources for Transcription factors SlMYB41, SlMYB92 and SlWRKY71 regulate gene expression in the tomato exodermis (2024)
Github repository for the publication
Raw data on GEO (to be posted upon publication)

Additional code and data resources for Innovation, conservation, and repurposing of gene function in root cell type development (2021)
Github repository for the publication
Raw data on GEO
Data on tomato eFP browser - click on the “Tissue and Experiment eFP Viewers

Additional code and data resources for Evolutionary flexibility in flooding response circuitry in angiosperms (2019)
Github repository for the publication
Genome browser - CoGe viewer of ATAC-seq, nuclear RNA, total RNA, TRAP RNA and Ribo-seq

Protocols:

Protocols developed during my postdoc period can be found here. They include bench protocols for TRAP-seq and affordable library prep method for RNAseq.