Publicaties
2022
Wetenschappelijke publicaties
Ketzetzi, S., Rinaldin, M., Dröge, P., Graaf, J. D., & Kraft, D. J. (2022). Activity-induced interactions and cooperation of artificial microswimmers in one-dimensional environments. Nature Communications, 13(1), [1772]. https://doi.org/10.1038/s41467-022-29430-1
Narinder, N., Bos, M. F., Abaurrea-Velasco, C., de Graaf, J., & Bechinger, C. (2022). Understanding enhanced rotational dynamics of active probes in rod suspensions. Soft Matter, 18(33), 6246-6253. https://doi.org/10.1039/d2sm00583b
Welling, T. A. J., Grau-Carbonell, A., Watanabe, K., Nagao, D., de Graaf, J., van Huis, M. A., & van Blaaderen, A. (2022). Frequency-controlled electrophoretic mobility of a particle within a porous, hollow shell. Journal of Colloid and Interface Science, 627, 761-773. https://doi.org/10.1016/j.jcis.2022.07.091
2021
Wetenschappelijke publicaties
Demirörs, A. F., Aykut, S., Ganzeboom, S., Meier, Y. A., Hardeman, R., de Graaf, J., Mathijssen, A. J. T. M., Poloni, E., Carpenter, J. A., Ünlü, C., & Zenhäusern, D. (2021). Amphibious Transport of Fluids and Solids by Soft Magnetic Carpets. Advanced Science, 8(21), 1-10. [2102510]. https://doi.org/10.1002/advs.202102510
Huang, T., Ibarlucea, B., Caspari, A., Synytska, A., Cuniberti, G., de Graaf, J., & Baraban, L. (2021). Impact of surface charge on the motion of light-activated Janus micromotors. European Physical Journal E, 44(3), 1-11. [39]. https://doi.org/10.1140/epje/s10189-021-00008-x
Abaurrea-Velasco, C., Lozano, C., Bechinger, C., & De Graaf, J. (2021). Erratum: Autonomously Probing Viscoelasticity in Disordered Suspensions [Phys. Rev. Lett. 125 , 258002 (2020)]. Physical Review Letters, 126(11), 1-1. [119902]. https://doi.org/10.1103/PhysRevLett.126.119902
Kuron, M., Stewart, C., de Graaf, J., & Holm, C. (2021). An extensible lattice Boltzmann method for viscoelastic flows: complex and moving boundaries in Oldroyd-B fluids. European Physical Journal E, 44(1), 1-14. [1]. https://doi.org/10.1140/epje/s10189-020-00005-6
Welling, T. A. J., Watanabe, K., Grau-Carbonell, A., De Graaf, J., Nagao, D., Imhof, A., Van Huis, M. A., & Van Blaaderen, A. (2021). Tunability of Interactions between the Core and Shell in Rattle-Type Particles Studied with Liquid-Cell Electron Microscopy. ACS Nano, 15(7), 11137-11149. https://doi.org/10.1021/acsnano.1c03140
Demirörs, A. F., Stauffer, A., Lauener, C., Cossu, J., Ramakrishna, S. N., De Graaf, J., Alcantara, C. C. J., Pané, S., Spencer, N., & Studart, A. R. (2021). Magnetic propulsion of colloidal microrollers controlled by electrically modulated friction. Soft Matter, 17(4), 1037-1047. https://doi.org/10.1039/D0SM01449D
2020
Wetenschappelijke publicaties
Zhang, Z., De Graaf, J., & Faez, S. (2020). Regulating the aggregation of colloidal particles in an electro-osmotic micropump. Soft Matter, 16(47), 10707-10715. https://doi.org/10.1039/d0sm01084g
Ketzetzi, S., De Graaf, J., Doherty, R. P., & Kraft, D. J. (2020). Slip Length Dependent Propulsion Speed of Catalytic Colloidal Swimmers near Walls. Physical Review Letters, 124(4), [048002]. https://doi.org/10.1103/PhysRevLett.124.048002
Ketzetzi, S., De Graaf, J., & Kraft, D. J. (2020). Diffusion-Based Height Analysis Reveals Robust Microswimmer-Wall Separation. Physical Review Letters, 125(23), [238001]. https://doi.org/10.1103/PhysRevLett.125.238001
Abaurrea-Velasco, C., Lozano, C., Bechinger, C., & De Graaf, J. (2020). Autonomously Probing Viscoelasticity in Disordered Suspensions. Physical Review Letters, 125(25), [258002]. https://doi.org/10.1103/PhysRevLett.125.258002
Verweij, R. W., Ketzetzi, S., De Graaf, J., & Kraft, D. J. (2020). Height distribution and orientation of colloidal dumbbells near a wall. Physical Review E, 102(6), [062608]. https://doi.org/10.1103/PhysRevE.102.062608
2019
Wetenschappelijke publicaties
De Graaf, J., & Samin, S. (2019). Self-thermoelectrophoresis at low salinity. Soft Matter, 15(36), 7219-7236. https://doi.org/10.1039/c9sm00886a
Kuron, M., Stärk, P., Holm, C., & De Graaf, J. (2019). Hydrodynamic mobility reversal of squirmers near flat and curved surfaces. Soft Matter, 15(29), 5908-5920. https://doi.org/10.1039/c9sm00692c
Kuron, M., Stärk, P., Burkard, C., De Graaf, J., & Holm, C. (2019). A lattice Boltzmann model for squirmers. Journal of Chemical Physics, 150(14), [144110]. https://doi.org/10.1063/1.5085765
Weik, F., Weeber, R., Szuttor, K., Breitsprecher, K., de Graaf, J., Kuron, M., Landsgesell, J., Menke, H., Sean, D., & Holm, C. (2019). ESPResSo 4.0 – an extensible software package for simulating soft matter systems. European Physical Journal: Special Topics, 227(14), 1789-1816. https://doi.org/10.1140/epjst/e2019-800186-9
2018
Wetenschappelijke publicaties
Castelli, A., De Graaf, J., Marras, S., Brescia, R., Goldoni, L., Manna, L., & Arciniegas, M. P. (2018). Understanding and tailoring ligand interactions in the self-assembly of branched colloidal nanocrystals into planar superlattices. Nature Communications, 9(1), [1141]. https://doi.org/10.1038/s41467-018-03550-z
Palusa, M., De Graaf, J., Brown, A., & Morozov, A. (2018). Sedimentation of a rigid helix in viscous media. Physical Review Fluids, 3(12), [124301]. https://doi.org/10.1103/PhysRevFluids.3.124301
De Graaf, J., Poon, W. C. K., Haughey, M. J., & Hermes, M. (2018). Hydrodynamics strongly affect the dynamics of colloidal gelation but not gel structure. Soft Matter, 15(1), 10-16. https://doi.org/10.1039/c8sm01611a
2017
Wetenschappelijke publicaties
De Graaf, J., & Stenhammar, J. (2017). Lattice-Boltzmann simulations of microswimmer-tracer interactions. Physical Review E, 95(2), [023302]. https://doi.org/10.1103/PhysRevE.95.023302
Niu, R., Kreissl, P., Brown, A. T., Rempfer, G., Botin, D., Holm, C., Palberg, T., & De Graaf, J. (2017). Microfluidic pumping by micromolar salt concentrations. Soft Matter, 13(7), 1505-1518. https://doi.org/10.1039/c6sm02240e
Brown, A. T., Poon, W. C. K., Holm, C., & De Graaf, J. (2017). Ionic screening and dissociation are crucial for understanding chemical self-propulsion in polar solvents. Soft Matter, 13(6), 1200-1222. https://doi.org/10.1039/c6sm01867j
Rempfer, G., Ehrhardt, S., Holm, C., & de Graaf, J. (2017). Nanoparticle Translocation through Conical Nanopores: A Finite Element Study of Electrokinetic Transport. Macromolecular Theory and Simulations, 26(1), [1600051]. https://doi.org/10.1002/mats.201600051
De Graaf, J., & Stenhammar, J. (2017). Stirring by periodic arrays of microswimmers. Journal of Fluid Mechanics, 811, 487-498. https://doi.org/10.1017/jfm.2016.797
2016
Wetenschappelijke publicaties
Kuron, M., Rempfer, G., Schornbaum, F., Bauer, M., Godenschwager, C., Holm, C., & De Graaf, J. (2016). Moving charged particles in lattice Boltzmann-based electrokinetics. Journal of Chemical Physics, 145(21), [214102]. https://doi.org/10.1063/1.4968596
Rempfer, G., Ehrhardt, S., Laohakunakorn, N., Davies, G. B., Keyser, U. F., Holm, C., & De Graaf, J. (2016). Selective Trapping of DNA Using Glass Microcapillaries. Langmuir, 32(33), 8525-8532. https://doi.org/10.1021/acs.langmuir.6b02071
Rempfer, G., Davies, G. B., Holm, C., & De Graaf, J. (2016). Reducing spurious flow in simulations of electrokinetic phenomena. Journal of Chemical Physics, 145(4), [044901]. https://doi.org/10.1063/1.4958950
De Graaf, J., Mathijssen, A. J. T. M., Fabritius, M., Menke, H., Holm, C., & Shendruk, T. N. (2016). Understanding the onset of oscillatory swimming in microchannels. Soft Matter, 12(21), 4704-4708. https://doi.org/10.1039/c6sm00939e
De Graaf, J., Menke, H., Mathijssen, A. J. T. M., Fabritius, M., Holm, C., & Shendruk, T. N. (2016). Lattice-Boltzmann hydrodynamics of anisotropic active matter. Journal of Chemical Physics, 144(13), [134106]. https://doi.org/10.1063/1.4944962
Castelli, A., De Graaf, J., Prato, M., Manna, L., & Arciniegas, M. P. (2016). Tic-Tac-Toe Binary Lattices from the Interfacial Self-Assembly of Branched and Spherical Nanocrystals. ACS Nano, 10(4), 4345-4353. https://doi.org/10.1021/acsnano.5b08018
Sutter, E., Sutter, P., Tkachenko, A. V., Krahne, R., De Graaf, J., Arciniegas, M., & Manna, L. (2016). In situ microscopy of the self-assembly of branched nanocrystals in solution. Nature Communications, 7, [11213]. https://doi.org/10.1038/ncomms11213
2015
Wetenschappelijke publicaties
De Graaf, J., Peter, T., Fischer, L. P., & Holm, C. (2015). The Raspberry model for hydrodynamic interactions revisited. II. the effect of confinement. Journal of Chemical Physics, 143(8), [084108]. https://doi.org/10.1063/1.4928503
Fischer, L. P., Peter, T., Holm, C., & De Graaf, J. (2015). The raspberry model for hydrodynamic interactions revisited. I. Periodic arrays of spheres and dumbbells. Journal of Chemical Physics, 143(8), [084107]. https://doi.org/10.1063/1.4928502
De Graaf, J., Rempfer, G., & Holm, C. (2015). Diffusiophoretic self-propulsion for partially catalytic spherical colloids. IEEE Transactions on Nanobioscience, 14(3), 272-288. [7052389]. https://doi.org/10.1109/TNB.2015.2403255
Gantapara, A. P., de Graaf, J., van Roij, R., & Dijkstra, M. (2015). Phase behavior of a family of truncated hard cubes (vol 142, 054904, 2015). Journal of Chemical Physics, 142(8), [089902]. https://doi.org/10.1063/1.4913473
2014
Wetenschappelijke publicaties
Arciniegas, M. P., Kim, M. R., De Graaf, J., Brescia, R., Marras, S., Miszta, K., Dijkstra, M., Van Roij, R., & Manna, L. (2014). Self-assembly of octapod-shaped colloidal nanocrystals into a hexagonal ballerina network embedded in a thin polymer film. Nano Letters, 14(2), 1056-1063. https://doi.org/10.1021/nl404732m
Peng, B., Soligno, G., Kamp, M., De Nijs, B., De Graaf, J., Dijkstra, M., Van Roij, R., Van Blaaderen, A., & Imhof, A. (2014). Site-specific growth of polymers on silica rods. Soft Matter, 10(48), 9644-9650. https://doi.org/10.1039/c4sm01989j
2013
Wetenschappelijke publicaties
Qi, W., Dijkstra, M., de Graaf, J., Qiao, F., Marras, S., & Manna, L. (2013). Phase diagram of octapod-shaped nanocrystals in a quasi-two-dimensional planar geometry. Journal of Chemical Physics, 138, 154504-1-154504-13. https://doi.org/10.1063/1.4799269
Gantapara, A. P., de Graaf, J., van Roij, R. H. H. G., & Dijkstra, M. (2013). Phase Diagram and Structural Diversity of a Family of Truncated Cubes: Degenerate Close-Packed Structures and Vacancy-Rich States. Physical Review Letters, 111, 015501/1-015501/5. https://doi.org/10.1103/PhysRevLett.111.015501
Evers, W. H., Goris, B., Bals, S., Casavola, M., de Graaf, J., van Roij, R. H. H. G., Dijkstra, M., & Vanmaekelbergh, D. A. M. (2013). Low-Dimensional Semiconductor Superlattices Formed by Geometric Control over Nanocrystal Attachment. Nano Letters, 13(6), 2317-2323. https://doi.org/10.1021/nl303322k
2012
Wetenschappelijke publicaties
Ni, R., Gantapara, A. P., de Graaf, J., van Roij, R., & Dijkstra, M. (2012). Phase diagram of colloidal hard superballs: from cubes via spheres to octahedra (vol 8, pg 8826, 2012). Soft Matter.
de Graaf, J. (2012). Anisotropic Nanocolloids: self-assembly, interfacial adsorption, and electrostatic screening. [Doctoral thesis 1 (Research UU / Graduation UU), Utrecht University]. Utrecht University.
Qi, W., de Graaf, J., Qiao, F., Marras, S., Manna, L., & Dijkstra, M. (2012). Ordered Two-Dimensional Superstructures of Colloidal Octapod-Shaped Nanocrystals on Flat Substrates. Nano Letters, 12, 5299-5303. https://doi.org/10.1021/nl302620j
Ni, R., Gantapara, A. P., de Graaf, J., Van Roij, R., & Dijkstra, M. (2012). Phase diagram of colloidal hard superballs: from cubes via spheres to octahedra. Soft Matter, 8(34), 8826-8834. https://doi.org/10.1039/C2SM25813G
de Graaf, J., Boon, N. J. H., Dijkstra, M., & van Roij, R. H. H. G. (2012). Electrostatic interactions between Janus particles. Journal of Chemical Physics, 137, 104910/1-104910/13. [104910]. https://doi.org/10.1063/1.4751482
de Graaf, J., Filion, L. C., Marechal, M. A. T., van Roij, R. H. H. G., & Dijkstra, M. (2012). Crystal-structure prediction via the Floppy-Box Monte Carlo algorithm: Method and application to hard (non)convex particles. Journal of Chemical Physics, 137(21), 214101/1-104910/13/11. [214101]. https://doi.org/10.1063/1.4767529
Vakpublicaties
Dijkstra, M., de Graaf, J., Vanmaekelbergh, D. A. M., & van Roij, R. H. H. G. (2012). Orde uit Wanorde: Van plantensex via Einstein naar zelfassemblage van nanodeeltjes. Nederlands Tijdschrift voor Natuurkunde, 270-273.
2011
Wetenschappelijke publicaties
de Graaf, J., van Roij, R. H. H. G., & Dijkstra, M. (2011). Dense Regular Packings of Irregular Nonconvex Particles. Physical Review Letters, 107, 155501(1)-155501(18). https://doi.org/10.1103/PhysRevLett.107.155501
Miszta, K., de Graaf, J., Bertoni, G., Dorfs, D., Brescia, R., Marras, S., Ceseracciu, L., Cingolani, R., van Roij, R. H. H. G., Dijkstra, M., & Manna, L. (2011). Hierarchical self-assembly of suspended branched colloidal nanocrystals into superlattice structures. Nature Materials, 10, 872-876. https://doi.org/10.1038/nmat3121
2010
Wetenschappelijke publicaties
de Graaf, J., Dijkstra, M., & Van Roij, R. (2010). Adsorption trajectories and free-energy separatrices for colloidal particles in contact with a liquid-liquid interface. Journal of Chemical Physics, 132(16), 164902/1-164902/14. [164902]. https://doi.org/10.1063/1.3389481
https://dspace.library.uu.nl/bitstream/handle/1874/203094/cvips%26doi%3D10.1063_1.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/203094/cvips%26doi%3D10.1063_1.pdf?sequence=1
Overige resultaten
de Graaf, J., Dijkstra, M., & van Roij, R. H. H. G. (2010). Interfacial adsorption dynamics of colloids: application of the triangular tessellation technique. Poster session presented at International Soft Matter Conference 2010, Granada, Spain.
de Graaf, J., Dijkstra, M., & van Roij, R. H. H. G. (2010). Interfacial adsorption dynamics of colloids: application of the triangular tessellation technique. Poster session presented at NWO CW (Xth Dutch Polymer Days), Veldhoven, NL.
de Graaf, J., Dijkstra, M., & van Roij, R. H. H. G. (2010). Interfacial adsorption dynamics of colloids: application of the triangular tessellation technique. Poster session presented at Physics@FOM, Veldhoven, NL.
2009
Wetenschappelijke publicaties
de Graaf, J., Dijkstra, M., & van Roij, R. H. H. G. (2009). Triangular tessellation scheme for the adsorption free energy at the liquid-liquid interface : towards nonconvex patterned colloids. Physical Review. E, Statistical, nonlinear, and soft matter physics, 80, 051405-1-051405-19.
https://dspace.library.uu.nl/bitstream/handle/1874/42929/e051405.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/42929/e051405.pdf?sequence=1
Bier, M., de Graaf, J., Zwanikken, J. W., & van Roij, R. H. H. G. (2009). Curvature dependence of the electrolytic liquid-liquid interfacial tension. Journal of Chemical Physics, 130(2), 024703/1-024703/7.
https://dspace.library.uu.nl/bitstream/handle/1874/40592/GetPDFServlet.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/40592/GetPDFServlet.pdf?sequence=1
2008
Wetenschappelijke publicaties
de Graaf, J., Zwanikken, J. W., Bier, M., Baarsma, A., Oloumi, Y., Spelt, M., & van Roij, R. H. H. G. (2008). Spontaneous charging and crystallization of water droplets in oil. Journal of Chemical Physics, 129(194701), 1-9.
https://dspace.library.uu.nl/bitstream/handle/1874/32726/GetPDFServlet.pdf?sequence=1
https://dspace.library.uu.nl/bitstream/handle/1874/32726/GetPDFServlet.pdf?sequence=1
Zwanikken, J. W., de Graaf, J., Bier, M., & van Roij, R. H. H. G. (2008). Stability of additive-free water-in-oil emulsions. Journal of physics. Condensed matter, 20, 494238.