2012

  • Ahmad, S. (2012). Plant basal resistance: genetics, biochemistry and impacts on plant-biotic interactions. pp. 1-145, Ph.D. Thesis Utrecht University. 
  • Bakker, P.A.H.M. and Mercado-Blanco, J. (2012). The rhizosphere microbiota and plant health. Plant and Soil Virtual Issue 2 (pdf).
  • Berendsen, R.L., Kalkhove, S.I.C., Lugones, L.G., Baars, J.J.P., Wösten, H.A.B. and Bakker, P.A.H.M. (2012). Effects of fluorescent Pseudomonas spp. isolated from mushroom cultures on Lecanicillium fungicolaBiological Control 63: 210-221 (pdf).
  • Berendsen, R.L., Kalkhove, S.I.C., Lugones, L.G., Wösten, H.A.B. and Bakker, P.A.H.M. (2012). Germination of Lecanicillium fungicola in the mycosphere ofAgaricus bisporus. Environmental Microbiology Reports 4: 227-233 (pdf).
  • Berendsen, R.L., Pieterse, C.M.J. and Bakker, P.A.H.M. (2012). The rhizosphere microbiome and plant health. Trends in Plant Science 17: 478-486 (pdf).
  • Cabral, A., Oome, S., Sander, N., Küfner, I., Nürnberger, T., and Van den Ackerveken, G. (2012). Nontoxic Nep1-like proteins of the downy mildew pathogen Hyaloperonospora arabidopsidis; repression of necrosis-inducing activity by a surface-exposed region. Molecular Plant-Microbe Interactions 25: 697-708 (pdf).
  • Cerrudo, I., Keller, M.M., Cargnel, M.D., Demkura, P.V., De Wit, M., Patitucci, M.S., Pierik, R., Pieterse, C.M.J. and Ballaré, C.L. (2012). Low Red:Far-Red ratios reduce Arabidopsis resistance to Botrytis cinerea and jasmonate responses via a COI1-JAZ10-dependent, salicylic acid-independent mechanism. Plant Physiology 158: 2042–2052 (pdf).
  • Cruz-Ramírez, A., Díaz-Triviño, S., Blilou, I., Grieneisen, V.A., Sozzani, R., Zamioudis, C., Miskolczi, P., Nieuwland, J., Benjamins, R., Dhonukshe, P., Caballero-Pérez, J., Horvath, B., Long, Y., Mähönen, A.P., Zhang, H., Xu, J., Murray, J.A.H., Benfey, P.N., Bako, L., Marée, A.F.M. and Scheres, B. (2012). A bistable circuit involving SCARECROW-RETINOBLASTOMA integrates cues to inform asymmetric stem cell division. Cell 150: 1002-1015 (pdf).
  • Djavaheri, M., Mercado-Blanco, J., Versluis, C., Meyer, J.-M., Van Loon, L.C. and Bakker, P.A.H.M. (2012). Iron-regulated metabolites produced by Pseudomonas fluorescens WCS374r are not required for eliciting induced systemic resistance (ISR) against Pseudomonas syringae pv. tomato in Arabidopsis. MicrobiologyOpen 1: 311-325 (pdf).
  • Doornbos, R.F., Van Loon, L.C. and Bakker, P.A.H.M. (2012). Impact of root exudates and plant defense signaling on bacterial communities in the rhizosphere. Agronomy for Sustainable Development 32: 227-243 (pdf).
  • Kipfer, T., Wohlgemuth, T., Van der Heijden, M.G.A., Ghazoul, J. and Egli, S. (2012). Growth response of drought-stressed Pinus sylvestris seedlings to single- and multi-species inoculation with ectomycorrhizal fungi. PLoS ONE 7: e35275.
  • Lapin, D., Meyer, R.C., Takahashi, H., Bechtold, U. and Van den Ackerveken, G. (2012) Broad-spectrum resistance of Arabidopsis C24 to downy mildew is mediated by different combinations of isolate-specific loci. New Phytologist 196: 1171–1181 (pdf)
  • Neal, A.L., Ahmad, S., Gordon-Weeks, R. and Ton, J. (2012). Benzoxazinoids in root exudates of maize attract Pseudomonas putida to the rhizosphere. PLoS ONE 7: e35498 (pdf).
  • Pieterse, C.M.J. (2012). Prime time for transgenerational defense. Plant Physiology 158: 545 (pdf).
  • Pieterse, C.M.J., Leon-Reyes, A., Van der Does, D., Verhage, A., Koornneef, A., Van Pelt, J.A. and Van Wees, S.C.M. (2012). Networking by small-molecule hormones in plant immunity. In: Induced resistance in plants against insects and diseases, IOBC-WPRS Bulletin 83: 77-80 (pdf).
  • Pieterse, C.M.J., Van der Does, D., Zamioudis, C., Leon-Reyes, A. and Van Wees, S.C.M. (2012). Hormonal modulation of plant immunity. Annual Review of Cell and Developmental Biology 28: 489-521 (pdf).
  • Seidl, M.F., Van den Ackerveken, G., Govers, F. and Snel, B. (2012). Reconstruction of oomycete genome evolution identifies differences in evolutionary trajectories leading to present-day large gene families. Genome Biology Evolution 4: 199-211 (pdf).
  • Seidl, M.F., Wang, R-P., Van den Ackerveken, G., Govers, F. and Snel, B. (2012) Bioinformatic inference of specific and general transcription factor binding sites in the plant pathogen Phytophthora infestansPLoS ONE 7: e51295 (pdf).
  • Smit, E., Bakker, P.A.H.M., Bergmans, H., Bloem, J., Griffiths, B.S., Rutgers, M., Sanvido, O., Singh, B.K., Van Veen H., Wilhelm, R. and Glandorf, D.C.M. (2012). General Surveillance of the soil ecosystem: an approach to monitoring unexpected adverse effects of GMO’s. Ecological Indicators 14: 107-113 (pdf).
  • Stassen, J.H.M. (2012). Identification and functional analysis of downy mildew effectors in lettuce and Arabidopsis. pp. 1-187, Ph.D. Thesis Utrecht University.
  • Stassen, J.H.M., Seidl, M.F., Vergeer, P.W.J., Nijman, I.J., Snel, B., Cuppen, E., and Van den Ackerveken, G. (2012). Effector identification in the lettuce downy mildew Bremia lactucae by massively parallel transcriptome sequencing. Molecular Plant Pathology 13: 719-731 (pdf).
  • Terpstra, I. (2012). Genetical genomics - Genetic regulation of environmental responses in Arabidopsis. pp. 1-139, Ph.D. Thesis Utrecht University.
  • Van der Does, D. (2012). Hormonal crosstalk in plant immunity. pp. 1-169, Ph.D. Thesis Utrecht University.
  • Van der Ent, S. and Pieterse, C.M.J. (2012). Ethylene: multitasker in plant-attacker interactions. In: Annual Plant Reviews - The Plant Hormone Ethylene (M.T. McManus, ed). Blackwell Publishing. Annual Plant Reviews 44: 343-377.
  • Van der Heijden, M. (2012). Met mycorrhiza meer mans: Duurzaamheid en biodiversiteit door ondergrondse schimmelnetwerken. Oratie Universiteit Utrecht, 12 p (pdf).
  • Van Molken, T., De Caluwe, H., Hordijk, C.A., Leon-Reyes, A., Snoeren, T.A.L., Van Dam, N.M. and Stuefer, J.F. (2012). Virus infection decreases the attractiveness of white clover plants for a non-vectoring herbivore. Oecologia170: 433-444 (pdf).
  • Van Wees, S.C.M. (2012).Unravelling intimacies between plants and their enemies. Plant Biology 14: iii-iv (pdf).
  • Van Zanten, M., Ritsema, T., Polko, J.K., Leon-Reyes, A., Voesenek, L.A.C.J., Millenaar, F.F., Pieterse, C.M.J. and Peeters, A.J.M. (2012). Modulation of ethylene and heat-controlled hyponastic leaf movement in Arabidopsis thaliana by the plant defense hormones jasmonate and salicylate. Planta 235: 677–685 (pdf).
  • Veiga, R.S.L. (2012). Biological weed control with soil fungi? Antagonistic effects of arbuscular mycorrhizal fungi on the growth of weeds. pp. 1-139, Ph.D. Thesis Utrecht University. 
  • Veiga, R.S.L., Howard, K. and Van der Heijden, M.G.A. (2012). No evidence for allelopathic effects of arbuscular mycorrhizal fungi on the non-host plant Stellaria media. Plant and Soil 360: 319-331.
  • Verbruggen, E., Kiers, E.T., Bakelaar, P.N.C., Röling, W.F.M. and Van der Heijden, M.G.A. (2012). Soil communities from organically and conventionally managed fields provide different agro-ecosystem services. Plant and Soil 350: 43-55.
  • Verbruggen, E., Kiers, E.T., Bakelaar, P.N.C., Roling, W.F.M. and Van der Heijden, M.G.A. (2012). Provision of contrasting ecosystem services by soil communities from different agricultural fields. Plant and Soil 350: 43-55.
  • Verbruggen, E., Kuramae, E.E., Hillekens, R., De Hollander, M., Kiers, E.T., Roling, W.F.M., Kowalchuk, G.A. and Van der Heijden, M.G.A. (2012). Testing potential effects of maize expressing the Bacillus thuringiensis Cry1Ab endotoxin (Bt Maize) on mycorrhizal fungal communities via DNA- and RNA-based pyrosequencing and molecular fingerprinting. Applied and Environmental Microbiology 78: 7384-7392.
  • Verbruggen, E., Van der Heijden, M.G.A., Weedon, J.T., Kowalchuk, G.A. and Rolling, W.F.M. (2012). Community assembly, species richness and nestedness of arbuscular mycorrhizal fungi in agricultural soils. Molecular Ecology 21: 2341-2353.
  • Verhage, A., Vlaardingerbroek, I., Dicke, M., Van Wees, S.C.M. and Pieterse, C.M.J. (2012). The transcription factor MYC2 shapes plant defense responses in Arabidopsis upon Pieris rapae herbivory.  In: Induced resistance in plants against insects and diseases, IOBC-WPRS Bulletin 83: 21-24. 
  • Weller,  D.M., Mavrodi, D.V., Van Pelt, J.A., Pieterse, C.M.J., Van Loon, L.C. and Bakker, P.A.H.M. (2012). Induced systemic resistance (ISR) in Arabidopsis thaliana against Pseudomonas syringae pv. tomato by 2,4-diacetylphloroglucinol-producing Pseudomonas fluorescensPhytopathology 102: 403-412 (pdf).
  • Zamioudis, C. (2012). Signaling in Arabidopsis roots in response to beneficial rhizobacteria. pp. 1-127, Ph.D. Thesis Utrecht University.
  • Zamioudis, C. and Pieterse, C.M.J. (2012). Modulation of host immunity by beneficial microbes. Molecular Plant-Microbe Interactions 25: 139-150 (pdf).
  • Zeilmaker, T. (2012). Functional and applied aspects of the DOWNY MILDEW RESISTANT 1 and 6 genes in Arabidopsis. pp. 1-147, Ph.D. Thesis Utrecht University.