2018

  • Aerts, N., De Bruijn, S., Van Mourik, H., Angenent, G.C. and Van Dijk, A.D.J. (2018). Comparative analysis of binding patterns of MADS-domain proteins in Arabidopsis thaliana. BMC Plant Biology 18: 131. https://doi.org/10.1186/s12870-018-1348-8.
  • Bakker, P.A.H.M., Pieterse, C.M.J., De Jonge, R. and Berendsen, R.L. (2018). The soil-borne legacy. Cell 172: 1178-180. https://doi.org/10.1016/j.cell.2018.02.024.
  • Banjaree, S., Schlaeppi, K. and Van der Heijden, M.G.A. (2018). Keystone taxa as drivers of microbiome structure and functioning. Nature Reviews Microbiology 16: 567-576. https://doi.org/10.1038/s41579-018-0024-1.
  • Berendsen, R.L., Vismans, G., Yu, K., Song, Y., Burgman, W., Burmølle, M., Herschend, J., De Jonge, R., Bakker, P.A.H.M. and Pieterse, C.M.J. (2018). Disease-induced assemblage of a plant-beneficial bacterial consortium. ISME Journal 12: 1496–1507. https://doi.org/10.1038/s41396-018-0093-1.
  • Broekgaarden, C., Pelgrom, K.T.B., Bucher, J., Van Dam, N.M., Grosser, K., Pieterse, C.M.J., Van Kaauwen, M., Steenhuis, G. Voorrips, R.E., De Vos, M., Vosman, B., Worrich,  Worrich, A. and Van Wees, S.C.M. (2018). Combining QTL mapping with transcriptome and metabolome profiling reveals a possible role for ABA signaling in resistance against the cabbage whitefly in cabbage. PLoS ONE 13: e0206103. https://doi.org/10.1371/journal.pone.0206103.
  • Brugman, S., Ikeda-Ohtsubo, W., Braber, S., Folkerts, G., Pieterse, C.M.J. and Bakker, P.A.H.M. (2018). A comparative review on microbiota manipulation: lessons from fish, plants, livestock and human research. Frontiers in Nutrition 5: 80. https://doi.org/10.3389/fnut.2018.00080.
  • Coolen, S. (2018). Adaptive plant responses to sequential biotic and abiotic stress: unraveling the underlying genetics. pp. 1-211, Ph.D. Thesis Utrecht University. Full text via Utrecht University Repository.
  • Cosme, M., Fernandez, I., Van der Heijden, M.G.A. and Pieterse, C.M.J. (2018). Non-mycorrhizal plants: the exceptions that prove the rule. Trends in Plant Science 23: 577-587. https://doi.org/10.1016/j.tplants.2018.04.004 .   
  • De Jonge, R., Ebert, M.K., Huitt-Roehl, C.R., Pal, P., Suttle, J.C., Spanner, R.E., Neubauer, J.D., Jurick, W.M., Stott, K.A., Secor, G.A., Thomma, B.P.H.J., Van de Peer, Y., Townsend, C.A. and Bolton, M.D. (2018). Gene cluster conservation provides insight into cercosporin biosynthesis and extends production to the genus Colletotrichum. Proceedings of the National Academy of Sciences USA 115: 5459-5466. https://doi.org/10.1073/pnas.1712798115.
  • Garza, D.R., Van Verk, M.C., Huynen, M.A. and Dutilh, B.E. (2018). Towards predicting the environmental metabolome from metagenomics with a mechanistic model. Nature Microbiology 3: 456–460. https://doi.org/10.1038/s41564-018-0124-8.
  • Hartman, K., Van der Heijden, M.G.A., Wittwer, R.A., Banerjee, S., Walser, J.C. and Schlaeppi, K. (2018). Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming. Microbiome 6: 14. https://doi.org/10.1186/s40168-017-0389-9.
  • Hu, L., Robert, C.A.M., Cadot, S., Zhang, X., Ye, M., Li, B., Manzo, D., Chervet, N., Steinger, T., Van der Heijden, M.G.A., Schlaeppi, K. and Erb, M. (2018). Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota. Nature Communications 9: 2738. https://doi.org/10.1038/s41467-018-05122-7.
  • Ikeda-Ohtsubo, W., Brugman, S., Warden, C.H., Rebel, J.M.J., Folkerts, G. and Pieterse, C.M.J. (2018). How can we define "optimal microbiota?": a comparative review of structure and functions of microbiota of animals, fish, and plants in agriculture. Frontiers in Nutrition 5: 90. https://doi.org/10.3389/fnut.2018.00090.
  • Loaiza Puerta, V., Pujol Pereira, E.I., Wittwer, R., Van Der Heijden, M., & Six, J. (2018). Improvement of soil structure through organic crop management, conservation tillage and grass-clover ley. Soil and Tillage Research 180: 1-9. https://doi.org/10.1016/j.still.2018.02.007.
  • Mariotte P., Mehrabi, Z., Bezemer, T.M., De Deyn, G.B., Kulmatiski, A., Drigo, B., Veen C.F., Van der Heijden, M.G.A. and Kardol, P. (2018). Plant-soil feedback: bridging natural and agricultural sciences. Trends in Ecology & Evolution 33: 129-142.  http://dx.doi.org/10.1016/j.tree.2017.11.005.
  • Pelgrom, A.J.E. (2018). Downy mildew effector recognition and host protein interaction in lettuce. pp. 1-180, Ph.D. Thesis Utrecht University. Full text via Utrecht University Repository. Full text via Utrecht University Repository.
  • Proietti, S., Caarls, L., Coolen, S., Van Pelt, J.A., Van Wees, S.C.M. and Pieterse, C.M.J. (2018). Genome-wide association study reveals novel players in defense hormone crosstalk in Arabidopsis. Plant Cell & Environment 41: 2342-2356. https://doi.org/10.1111/pce.13357.
  • Raaymakers, T.M. (2018). Activation of plant immunity by microbial Nep1-like protein patterns. pp. 1-174, Ph.D. Thesis Utrecht University. Full text via Utrecht University Repository.
  • Ramirez, K.S., Knight, C.G., De Hollander, M., Brearley, F.Q., Constantinides, B., Cotton, A., Creer, S., Crowther, T.W., Davison, J., Delgado-Baquerizo, M., Dorrepaal, E., Elliott, D.R., Fox, G., Griffiths, R.I., Hale, C., Hartman, K., Houlden, A., Jones, D.L., Krab, E.J., Maestre, F.T., McGuire, K.L., Monteux, S., Orr, C.H., van der Putten, W.H., Roberts, I.S., Robinson, D.A., Rocca, J.D., Rowntree, J., Schlaeppi, K., Shepherd, M., Singh, B.K., Straathof, A.L., Bhatnagar, J.M., Thion, C., Van der Heijden, M.G.A. and De Vries, F.T. (2018). Detecting macroecological patterns in bacterial communities across independent studies of global soils. Nature Microbiology 3: 189-196. https://doi.org/10.1038/s41564-017-0062-x.
  • Schweizer, S.A., Seitz, B., Van der Heijden, M.G.A., Schulin, R. and Tandy, S. (2018). Impact of organic and conventional farming systems on wheat grain uptake and soil bioavailability of zinc and cadmium. Science of The Total Environment 639: 608-616. https://doi.org/10.1016/j.scitotenv.2018.05.187.
  • Steenbergen, M., Abd-el-Haliem, A., Bleeker, P., Dicke, M., Escobar-Bravo, R., Cheng, G., Haring, M.A.,  Kant, M. R., Kappers, I., Klinkhamer, P.G.L., Leiss, K.A., Legarrea, S., Mirka, M., Mouden, S., Pieterse, C.M.J., Sarde, S.J., Schuurink, R.C., De Vos, M., Van Wees, S.C.M. and Broekgaarden, C. (2018). Thrips advisor: exploiting thrips-induced defences to combat pests on crops. Journal of Experimental Botany 69: 1837–1848. https://doi.org/10.1093/jxb/ery060. Free access.
  • Stringlis, I. (2018). Signals from the underground and their interplay with plant immunity. pp. 1-159, Ph.D. Thesis Utrecht University. Full text via Utrecht University Repository.
  • Stringlis, I.A., Zhang, H., Pieterse, C.M.J., Bolton, M.D. and De Jonge, R. (2018). Microbial small molecules – weapons of plant subversion. Natural Product Reports 35: 410-433. https://doi.org/10.1039/c7np00062f.
  • Stringlis, I.A., Proietti, S., Hickman, R., Van Verk, M.C., Zamioudis, C. and Pieterse, C.M.J. (2018). Root transcriptional dynamics induced by beneficial rhizobacteria and microbial immune elicitors reveal signatures of adaptation to mutualists. Plant Journal 93: 166-180. https://doi.org/10.1111/tpj.13741.
  • Stringlis, I.A., Yu, K., Feussner, K., De Jonge, R., Van Bentum, S., Van Verk, M.C., Berendsen, R.L., Bakker, P.A.H.M., Feussner, I. and Pieterse, C.M.J. (2018). MYB72-dependent coumarin exudation shapes root microbiome assembly to promote plant health. Proceedings of the National Academy of Sciences USA 115: 5213-5222. https://doi.org/10.1073/pnas.1722335115 . PNAS Commentary on this article by Lundberg & Teixeira.
  • Syed Ab Rahman, S.F., Singh, E., Pieterse, C.M.J. and Schenk, P.M. (2018). Emerging microbial biocontrol strategies for plant pathogens. Plant Science 267: 102-111. https://doi.org/10.1016/j.plantsci.2017.11.012.
  • Van der Heijden, M.G.A. (2018). Marcel van der Heijden. New Phytologist 219: 496-497. https://doi.org/10.1111/nph.15168 .
  • Van Herwijnen, M., Driedonks, T., Snoek, B., Kroon,T., Kleinjan, M., Jorritsma, R., Pieterse, C.M.J., Nolte-'T Hoen, E. and Wauben, M. (2018). Abundantly present miRNAs in milk-derived extracellular vesicles are conserved between mammals. Frontiers in Nutrition 5: 81. https://doi.org/10.3389/fnut.2018.00081.
  • Villena, J., Kitazawa, H., Van Wees, S.C.M., Pieterse, C.M.J. and Takahashi, H. (2018). Receptors and signaling pathways for recognition of bacteria in livestock and crops: prospects for beneficial microbes in healthy growth strategies. Frontiers in  Immunology 9: 2223. https://doi.org/10.3389/fimmu.2018.02223.
  • Wagg, C., Dudenhoffer, J.H., Widmer, F. and Van der Heijden, M.G.A. (2018). Linking diversity, synchrony and stability in soil microbial communities.  Functional Ecology 32: 1280-1292. http://doi.org/10.1111/1365-2435.13056.
  • Werner, G., Zhou, Y., Pieterse, C.M.J. and Kiers, T. (2018). Tracking plant preference for higher-quality mycorrhizal symbionts under varying CO2 conditions over multiple generations. Ecology & Evolution 8: 78-87. https://doi.org/10.1002/ece3.3635.
  • Yuan, J., Zhao, J., Wen, T., Zhao, M., Li, R., Goossens, P., Huang, Q., Bai, Y., Vivanco, J.M., Kowalchuk, G.A., Berendsen, R.L. and Shen, Q. (2018)  Root exudates drive the soil-borne legacy of aboveground pathogen infection. Microbiome 6: 156. http://doi.org/10.1186/s40168-018-0537-x.
  • Zhou, Y., Li, X., Gao, Y., Liu, H., Gao, Y.B., Van der Heijden, M.G.A. and Ren, A.Z. (2018). Plant endophytes and arbuscular mycorrhizal fungi alter plant competition. Functional Ecology 32: 1168-1179. http://doi.org/10.1111/1365-2435.13084.