Publications are visible on the profile pages of the staff members.

Publications CBDD (see below for 2016 - 2022)


Balsollier, C., T. Tomašič, D. Yasini, S. Bijkerk, M. Anderluh, and R.J. Pieters. 2023. Design of OSMI‐4 analogs using scaffold hopping: investigating the importance of the uridine mimic in the binding of OGT inhibitors. ChemMedChem 18(8): e202300001. DOI: 10.1002/cmdc.202300001

Breeuwsma, M., and B.A. Heesters. 2023. Protocol for the isolation and purification of human follicular dendritic cells for functional assays. STAR protocols 4(3): 102404. DOI: 10.1016/j.xpro.2023.102404

Bunyatov, M., M.A. Wolfert, R. Huizinga, M. Schreurs, B.C. Jacobs, and G.J. Boons. 2023. Chemoenzymatic synthesis of human natural killer-1 containing glycans and application as serum antibodies probes. Nat. Synth. In press (DOI: 10.1038/s44160-023-00394-4, online 02/Oct/2023).

Canales, A., J. Sastre, J.M. Orduña, C.M. Spruit, J. Pérez-Castells, G. Domínguez, K.M. Bouwman, R. van der Woude, F.J. Cañada, C.M. Nycholat, J.C. Paulson, G.J. Boons, J. Jiménez-Barbero, and R.P. de Vries. 2023. Revealing the specificity of human H1 influenza A viruses to complex N‐glycans. JACS Au 3(3): 868-878. DOI: 10.1021/jacsau.2c00664

Chen, D., A.K. Srivastava, J. Dubrochowska, L. Liu, T. Li, J.P. Hoffmann, J.K. Kolls, and G.J. Boons. 2023. A bioactive synthetic outer-core oligosaccharide derived from a Klebsiella pneumonia lipopolysaccharide for bacteria recognition. Chem. Eur. J. 29(25): e202203408. DOI: 10.1002/chem.202203408

Chopra, P., T. Yadavalli, F. Palmieri, S.A.K. Jongkees, L. Unione, D. Shukla, and G.J. Boons. 2023. Synthetic heparanase inhibitors can prevent herpes simplex viral spread. Angew. Chem. Int. Ed. 62(41): e202309838. DOI: 10.1002/anie.202309838

Conti, G., A. Bärenwaldt, S. Rabbani, T. Mühlethaler, M. Sarcevic, X. Jiang, O. Schwardt, D. Ricklin, R.J. Pieters, H. Läubli, and B. Ernst. 2023. Tetra- and hexavalent siglec-8 ligands modulate immune cell activation. Angew. Chem. Int. Ed. 62(52): e202314280. DOI: 10.1002/anie.202314280

de Jong SP, Felix Garza ZS, Gibson J, van Leeuwen S, de Vries RP, Boons GJ, van Hoesel M, de Haan K, van Groeningen L, Hulme KD van Willigen HD, Wynberg E, de Bree GJ, Matser A, Bakker M, van der Hoek L, Prins M, Kootstra NA, Eggink D, Nichols BE, Han AX, de Jong MD, Russell CA. 2023. Determinants of epidemic size and the impacts of lulls in seasonal influenza virus circulation. Nat. Commun, Accepted for publication

Derrien, M., N. Mikulic, M.A. Uyoga, E. Chenoll, E. Climent, A. Howard-Varona, S. Nyilima, N.U. Stoffel, S. Karanja, R. Kottler, B. Stahl, M.B. Zimmermann, and R. Bourdet-Sicard. 2023. Gut microbiome function and composition in infants from rural Kenya and association with human milk oligosaccharides. Gut Microbes 15(1): 2178793. DOI: 10.1080/19490976.2023.2178793

Filius, M., R. van Wee, C. de Lannoy, I. Westerlaken, Z. Li, S.H. Kim, C. de Agrela Pinto, Y. Wu, G.J. Boons, M. Pabst, D. de Ridder, and C. Joo. 2023. Full-length single-molecule protein fingerprinting. Nat. Nanotechnol. Accepted for publication.

Gan, J., C. Cao, B. Stahl, X. Zhao, J. Yan. 2023. Advances and challenges for obtaining human milk oligosaccharides: extraction from natural sources and synthesis by intentional design. Trends in Food Science & Technology141(7): 104203. DOI: 10.1016/j.tifs.2023.104203

Gräwe A, Spruit CM, Vries RP, Merkx M. Bioluminescent detection of viral surface proteins using branched multivalent protein switches. RSC. Chem Bio Accepted for publication

Hamming, P.H.E., N.J. Overeem, K. Diestelhorst, T. Fiers, M. Tieke, G.M. Vos, G.J.P.H. Boons, E. van der Vries, S. Block, and J. Huskens. 2023. Receptor density-dependent motility of influenza virus particles on surface gradients. ACS Appl. Mater. Interfaces 15(20): 25066-25076. DOI: 10.1021/acsami.3c05299

Hooijschuur, K.C., X. Liu, A. Grootendorst, I. Pieterman, and J. Sastre Toraño. 2023. In-line sample trap columns with diatomite for large volume injection in CZE-IM-MS. Electrophoresis 44(3-4): 395-402. DOI: 10.1002/elps.202200189

Jacobs, B.C. and G.J. Boons. 2023. Research briefing: Synthetic glycans provide insight in binding properties of toxic serum antibodies. Nat. Synth. (DOI: 10.1038/s44160-023-00395-3, online 02/Oct/2023).

Kadirvelraj, R., B.M. Boruah, S. Wang, D. Chapla, C. Huang, A. Ramiah, K.L. Hudson, A.R. Prudden, G.J. Boons, S.G. Withers, Z.A. Wood, and K.W. Moremen. 2023. Structural basis for Lewis antigen synthesis by the a1,3-fucosyltransferase, FUT9. Nat. Chem. Biol. 19(8): 1022-1030. DOI: 10.1038/s41589-023-01345-y

Karami, O, H. de Jong, V.J. Somovilla, B.V. Acosta, A.B. Sugiarta, M. Ham, A. Khadem, T. Wennekes, and R. Offringa. 2023. Structure-activity relationship of 2,4-D correlates auxinic activity with the induction of somatic embryogenesis in Arabidopsis thaliana. Plant Journal 116 (5): 1355-1369. DOI: 10.1111/tpj.16430

Kutter JS, Linster M, de Meulder D, Bestebroer TM, Lexmond P, Rosu ME, Richard M, de Vries RP, Fouchier RAM, Herfst S. Continued adaptation of A/H2N2 viruses during pandemic circulation in humans. J. Gen. Vir. 2023;104(8). doi: 10.1099/jgv.0.001881.

Liyanage, O.T., C. Xia, S. Ringler, B. Stahl, and C.E. Costello. 2023. Defining the ceramide composition of bovine and human milk gangliosides by direct infusion ESI-CID tandem mass spectrometry of native and permethylated molecular species. Anal. Chem. 95(45): 16465-16473. DOI: 10.1021/acs.analchem.3c00737

Ma, S., L. Liu, D. Eggink, S. Herfst, R.A,M. Fouchier, R.P. de Vries, G.J. Boons. 2023. Asymmetrical bi-antennary glycans prepared by a Stop-and-Go strategy reveal receptor binding evolution of human influenza A viruses. JACS Au. Accepted for publication.

Madunic, K, Y.M.C.A. Luijkx, O.A. Mayboroda, G.M.C. Janssen, P.A.V. Veelen, K. Strijbis, T. Wennekes, G.S.M. Lageveen-Kammeijer, and M. Wuhrer. 2023. O-Glycomic and proteomic signatures of spontaneous and butyrate-stimulated colorectal cancer cell line differentiation. Mol. Cell. Proteomics 22(3): 100501. DOI: 10.1016/j.mcpro.2023.100501

Maliepaard, J.C.L., J.M.A. Damen, G.J.P.H. Boons, and K.R. Reiding. 2023. Glycoproteomics-compatible MS/MS-based quantification of glycopeptide isomers. Anal. Chem. 95(25): 9605-9614. DOI:10.1021/acs.analchem.3c01319

Mavrogeni, M. E., M. Asadpoor, J.H. Judernatz, I. van Ark, M.M.S.M. Wösten, K. Strijbis, R.J. Pieters, G. Folkerts, and S. Braber. 2023. Protective effects of alginate and chitosan oligosaccharides against Clostridioides difficile bacteria and toxin. Toxins (Basel) 15(10): 586. DOI: 10.3390/toxins15100586

Ordnung, M., M. Mank, B. Stahl, D. Kurz, T. Marosvölgyi, T. Desci, D. Rothenbacher, J. Genuneit, and L.P. Siziba. 2023. Potential sex differences in human milk fatty acids and their association with atopic dermatitis: Results of the Ulm SPATZ health study. Pediatr. Allergy Immunol. 34(7): e13992. DOI: 10.1111/pai.13992

Perrett, H.R., P.J.M. Brouwer, J. Hurtado, M.L. Newby, L. Liu, H. Müller-Kräuter, S. Müller Aguirre, J.A. Burger, J.H. Bouhuijs, G. Gibson, T. Messmer, J.S. Schieffelin, A. Antanasijevic, G.J. Boons, T. Strecker, M. Crispin, R.W. Sanders, B. Briney, and A.B. Ward. 2023. Structural conservation of Lassa virus glycoproteins and recognition by neutralizing antibodies. Cell Rep. 42(5): 112524. DOI: 10.1016/j.celrep.2023.112524

Pronker, M.F., R. Creutznacher, I. Drulyte, R.J.G. Hulswit, Z. Li, F.J.M. van Kuppeveld, J. Snijder, Y. Lang, B.-J. Bosch, G.J. Boons, M. Frank, R.J. de Groot, and D.L. Hurdiss. 2023. Sialoglycan binding triggers spike opening in a human coronavirus. Nature 624(7990): 201-206. DOI: 10.1038/s41586-023-06599-z

Riedel, J., M. Lettow, M. Grabarics, M Gotze, R.L. Miller, G.J. Boons, G. Meijer, G. von Helden, G.P. Szekeres, and K. Pagel. 2023. Predicting structural motifs of glycosaminoglycans using cryogenic infrared spectroscopy and random forest. J. Am. Chem. Soc. 145(14): 7859-7868. DOI: 10.1021/jacs.2c12762

Scheibner, D., A.H. Salaheldin, O. Bagato, L.M. Zaeck, A. Mostafa, U. Blohm, C. Müller, A.F. Eweas, K. Franzke, A. Karger, A. Schäfer, M. Gischke, D. Hoffmann, S. Lerolle, X. Li, H.S. Abd El-Hamid, J. Veits, A. Breithaupt, G.J. Boons, M. Matrosovich, S. Finke, S. Pleschka, T.C. Mettenleiter, R.P. de Vries, and E.M. Abdelwhab. 2023. Phenotypic effects of mutations observed in the neuraminidase of human origin H5N1 influenza A viruses. PLoS Path. 9(2): e1011135. DOI: 10.1371/journal.ppat.1011135

Schimmel, P., B. Stahl, J. Knol, and C Belzer. 2023. The infant gut microbiota: in pursuit of non-protein nitrogen. Gut Microbes 15(1): 2211917. DOI: 10.1080/19490976.2023.2211917

Spruit, C.M., I.R. Sweet, J.C.L. Maliepaard, T. Bestebroer, P. Lexmond, B Qiu, M.J.A. Damen, R.A.M. Fouchier, K.R. Reiding, J. Snijder, S. Herfst, G.J. Boons, and R.P. de Vries. 2023. Contemporary human H3N2 influenza A viruses require a low threshold of suitable glycan receptors for efficient infection. Glycobiology 33(10): 784-800. DOI: 10.1093/glycob/cwad060

Sun, L., P. Chopra, I. Tomris, R. van der Woude, L. Liu, R.P. de Vries, and G.J. Boons. 2023. Well-defined heparin mimetics can inhibit binding of the trimeric spike of SARS-CoV-2 in a length dependent manner. JACS Au 3(4): 1185-1195. DOI: 10.1021/jacsau.3c00042

Tomris, I., L. Unione, L. Nguyen, P. Zaree, K.M. Bouwman, L. Liu, Z. Li, J.A. Fok, M. Ríos Carrasco, R. van der Woude, A.L.M. Kimpel, M.W. Linthorst, S.A. Kilavuzoglu, E.C.J.M Verpalen, T.G. Caniels, R.W. Sanders, B.A. Heesters, R.J. Pieters, J. Jiménez-Barbero, J.S. Klassen, G.J. Boons, and R.P. de Vries. 2023. SARS-CoV-2 spike N-terminal domain engages 9-O-acetylated α2–8-linked sialic acids. ACS Chem. Biol. 18(5): 1180-1191. DOI: 10.1021/acschembio.3c00066

van der Put, R. M. F., B. Metz, R.J. Pieters. 2023. Carriers and antigens: new developments in glycoconjugate vaccines. Vaccines 11(2): 219. DOI: 10.3390/vaccines11020219

Vos, G.M., J. Weber, I.R. Sweet, K.C. Hooijschuur, J. Sastre Toraño, and G.J. Boons. 2023. Oxidative release of O-glycans under neutral conditions for analysis of glycoconjugates having base-sensitive substituents. Anal. Chem. 95(23): 8825-8833. DOI: 10.1021/acs.analchem.3c00127

Vos, G.M., K.C. Hooijschuur, Z. Li, J. Fjeldsted, C. Klein, R.P. de Vries, J. Sastre Toraño, and G.J. Boons. 2023. Sialic acid O-acetylation patterns and glycosidic linkage type determination by ion mobility-mass spectrometry. Nat. Commun. 14(1): 6795. DOI: 10.1038/s41467-023-42575-x

Vos, G.M., Y. Wu, R. van der Woude, K.W. Moremen, R.P. de Vries, and G.J. Boons. 2023. Chemo-enzymatic synthesis of isomeric I-branched polylactosamines. Chem. Eur. J. In press (e202302877, DOI:10.1002/chem.202302877, online 01/Nov/2023).

Wu, X., M. Goebbels, L. Chao, T. Wennekes, F.J.M. van Kuppeveld, E. de Vries, and C.A.M. de Haan. 2023. Kinetic analysis of paramyxovirus-sialoglycan receptor interactions reveals virion motility. PLOS Pathog. 19(3): e1011273. DOI: 10.1371/journal.ppat.1011273

Wu, Y., G.M. Vos, C. Huang, D. Chapla, A.L.M. Kimpel, K.W. Moremen, R.P. de Vries, and G.J. Boons. 2023. Exploiting substrate specificities of 6-O-sulfotransferases to enzymatically synthesize keratan sulfate oligosaccharides. JACS Au 3(11): 3155-3164. DOI: 10.1021/jacsau.3c00488

Xia, M., F. Vago, L. Han, P. Huang, L. Nguyen, G.J. Boons, J.S Klassen, W. Jiang, and M. Tan. 2023. The αTSR domain of Plasmodium circumsporocite protein bound heparan sulfates and elicited high titers of sporozoite binding antibody after displayed by nanoparticles. Int. J. Nanomed. 8(18): 3087-3107. DOI: 10.2147/IJN.S406314

Zaree P, I. Tomris, S.D. de Vos, R. van der Woude, F.M. Flesch, R.J.M. Klein Gebbink, R.P. de Vries, and R.J. Pieters. 2023. Facile electrochemical affinity measurements of small and large molecules. RSC Advances 13(14): 9756-60. DOI: 10.1039/D3RA01029E.