Publications

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Publications CBDD (from 2016 in alphabetical order)

2022

Ayechu-Muruzabal, V., M. van de Kaa, R. Mukherjee, J. Garssen, B. Stahl, R.J. Pieters, B. Van't Land, A.D. Kraneveld, L.E.M. Willemsen. 2022. Modulation of the epithelial- immune cell crosstalk and related galectin secretion by DP3-5 galacto-oligosaccharides and beta-3'galactosyllactose. Biomolecules 12(3): 384 (DOI: 10.3390/biom12030384).

Bottin, J.H., S. Eussen, A.J. Igbinijesu, M. Mank, J.J. Koyembi, Y.T. Nyasenu, G. Ngaya, D. Mad-Bondo, J.B. Kongoma, B. Stahl, P.J. Sansonetti, R. Bourdet-Sicard, V. Moya- Alvarez. 2022. Food insecurity and maternal diet influence human milk composition between the infant's birth and 6 months after birth in Central-Africa. Nutrients 14(19): 4015 (DOI: 10.3390/nu14194015).

Cecotto, L., K. van Kessel, M.A. Wolfert, C. Vogely, B. van der Wal, H. Weinans, J. van Strijp, S. Amin Yavari. 2022. Antibacterial and anti-inflammatory properties of host defense peptides against Staphylococcus aureus. iScience 25(10): 105211 (DOI: 10.1016/j.isci.2022.105211).

Danielsson, A., M.M. Kogut, M. Maszota-Zieleniak, P. Chopra, G.J. Boons, S.A. Samsonov. 2022. Molecular dynamics-based descriptors of 3-O-sulfated heparan sulfate as contributors of protein binding specificity. Comput. Biol. Chem. 99: 107716 (DOI: 10.1016/j.compbiolchem.2022.107716).

de Jong, H., M.J. Moure, J.E.M. Hartman, G.P. Bosman, J.Y. Ong, B.W. Bardoel, G.J. Boons, M. Wosten, T. Wennekes. 2022. Selective exoenzymatic labeling of lipooligosaccharides of Neisseria gonorrhoeae with alpha2,6-sialoside analogues. ChemBioChem 23(19): e202200340 (DOI: 10.1002/cbic.202200340).

de Jong, H., M.M.S.M. Wosten, T. Wennekes. 2022. Sweet impersonators: Molecular mimicry of host glycans by bacteria. Glycobiology 32(1): 11-22 (DOI: 10.1093/glycob/cwab104).

de Jong, S.P.J., Z.C. Felix Garza, J.C. Gibson, A.X. Han, S. van Leeuwen, R.P. de Vries, G.J. Boons, M. van Hoesel, K. de Haan, L.E. van Groeningen, K.D. Hulme, H.D.G. van Willigen, E. Wynberg, G.J. de Bree, A. Matser, M. Bakker, L. van der Hoek, M. Prins, N.A. Kootstra, D. Eggink, B.E. Nichols, M.D. de Jong, C.A. Russell. 2022. Potential impacts of prolonged absence of influenza virus circulation on subsequent epidemics. medRxiv: (DOI: 10.1101/2022.02.05.22270494).

Aulaire, P.D., J. Hoogenboom, M.T. Uiterweerd, H. Zuilhof, T. Wennekes. 2022. Synthetic strategy towards a carbocyclic N-acetylneuraminic acid. Eur. J. Org. Chem. 2022(27): e202200297 (DOI: 10.1002/ejoc.202200297).

Di Maso, M., F. Bravi, M. Ferraroni, C. Agostoni, S. Eussen, T. Decsi, P.A. Quitadamo, P. Tonetto, C. Peila, C. Profeti, G. Salvatori, I. Kazmierska, A. Decarli, E. Vacca, E. Bertino, B. Stahl, G.E. Moro. 2022. Adherence to mediterranean diet of breastfeeding mothers and fatty acids composition of their human milk: Results from the Italian MEDIDIET study. Front. Nutr. 9: 891376 (DOI: 10.3389/fnut.2022.891376).

Duca, M., D. Haksar, J. van Neer, D.M.E. Thies-Weesie, D. Martinez-Alarcon, H. de Cock, A. Varrot, R.J. Pieters. 2022. Multivalent fucosides targeting beta-propeller lectins from lung pathogens with promising anti-adhesive properties. ACS Chem. Biol. 17(12): 3515- 3526 (DOI: 10.1021/acschembio.2c00708).

Gaide, N., M.N. Lucas, M. Delpont, G. Croville, K.M. Bouwman, A. Papanikolaou, R. van der Woude, I.A. Gagarinov, G.J. Boons, R.P. de Vries, R. Volmer, A. Teillaud, T. Vergne, C. Bleuart, G. Le Loc'h, M. Delverdier, J.L. Guérin. 2022. Pathobiology of highly pathogenic H5 avian influenza viruses in naturally infected Galliformes and Anseriformes in France during winter 2015-2016. Vet. Res. 53(1): 11 (DOI: 10.1186/s13567-022- 01028).

Hooijschuur, K., X. Liu, A. Grootendorst, I. Pieterman, J. Sastre Toraño. 2022. In-line sample trap columns with diatomite for large-volume injection in CZE–IM–MS. Electrophoresis: 1-8 (DOI: 10.1002/elps.202200189).

Hribernik, N., F. Chiodo, R.J. Pieters, A. Bernardi. 2022. Rhamnose-based glycomimetic for recruitment of endogenous anti-rhamnose antibodies. Tetrahedron Lett. 99: 153843 (DOI: 10.1016/j.tetlet.2022.153843).

Kariyawasam, U., M. Gulati, Y. Wang, H. Bao, T. Shan, X. Li, X. Cao, N. Sumathipala, Y. Hu, X. Zhang, G.J. Boons, H. Jiang. 2022. Preferential binding of DAP-PGs by major peptidoglycan recognition proteins found in cell-free hemolymph of Manduca sexta. Insect Biochem. Mol. Biol. 148: 103827 (DOI: 10.1016/j.ibmb.2022.103827).

Konietzny, P.B., H. Peters, M.L. Hofer, U.I.M. Gerling-Driessen, R.P. de Vries, T. Peters, L. Hartmann. 2022. Enzymatic sialylation of synthetic multivalent scaffolds: From 3'- sialyllactose glycomacromolecules to novel neoglycosides. Macromol. Biosci. 22: e2200358 (DOI: 10.1002/mabi.202200358).

Kontopodi, E., B. Stahl, J.B. van Goudoever, S. Boeren, R.A.H. Timmermans, H.M.W. den Besten, R.M. Van Elburg, K. Hettinga. 2022. Effects of high-pressure processing, UV-C irradiation and thermoultrasonication on donor human milk safety and quality. Front. Pediatr. 10: 828448 (DOI: 10.3389/fped.2022.828448).

Kucukkose, E., B.A. Heesters, J. Villaudy, A. Verheem, M. Cercel, S. van Hal, S.F. Boj, I.H.M. Borel Rinkes, C.J.A. Punt, J.M.L. Roodhart, J. Laoukili, M. Koopman, H. Spits, O. Kranenburg. 2022. Modeling resistance of colorectal peritoneal metastases to immune checkpoint blockade in humanized mice. J. Immunother. Cancer 10(12): e005345 (DOI: 10.1136/jitc-2022-005345).

Laman, J.D., R. Huizinga, G.J. Boons, B.C. Jacobs. 2022. Guillain-Barre syndrome: expanding the concept of molecular mimicry. Trends Immunol. 43(4): 296-308 (DOI: 10.1016/j.it.2022.02.003).

Latchoumane, C.V., P. Chopra, L. Sun, A. Ahmed, F. Palmieri, H.F. Wu, R. Guerreso, K. Thorne, N. Zeltner, G.J. Boons, L. Karumbaiah. 2022. Synthetic heparan sulfate hydrogels regulate neurotrophic factor signaling and neuronal network activity. ACS Appl. Mater. Interfaces 14(25): 28476-28488 (DOI: 10.1021/acsami.2c01575).

Li, Z., R. Derking, W.H. Lee, G.P. Bosman, A.B. Ward, R.W. Sanders, G.J. Boons. 2022. Conjugation of a Toll-like receptor agonist to glycans of an HIV native-like envelope trimer preserves neutralization epitopes. ChemBioChem 23(16): e202200236 (DOI: 10.1002/cbic.202200236).

Li, Z., L. Liu, L. Unione, Y. Lang, R.J. de Groot, G.J. Boons. 2022. Synthetic O-acetyl-N- glycolylneuraminic acid oligosaccharides reveal host-associated binding patterns of coronaviral glycoproteins. ACS Infect. Dis. 8(5): 1041-1050 (DOI: 10.1021/acsinfecdis.2c00046).

Li, Z., L. Unione, L. Liu, Y. Lang, R.P. de Vries, R.J. de Groot, G.J. Boons. 2022.Synthetic O-acetylated sialosides and their acetamido-deoxy analogues as probes for coronaviral hemagglutinin-esterase recognition. J. Am. Chem. Soc. 144(1): 424-435 (DOI: 10.1021/jacs.1c10329).

Liu, Z., X. Li, Z. Lu, X. Qin, H. Hong, Z. Zhou, R.J. Pieters, J. Shi, Z. Wu. 2022. Repurposing the pentameric B-subunit of Shiga toxin for Gb3-targeted immunotherapy of colorectal cancer by rhamnose conjugation. J. Pharm. Sci. 111(10): 2719-2729 (DOI: 10.1016/j.xphs.2022.07.017).

Loi, E.M., T. Tomasic, C. Balsollier, K. van Eekelen, M. Weiss, M. Gobec, M.G. Alteen, D.J. Vocadlo, R.J. Pieters, M. Anderluh. 2022. Discovery of a new drug-like series of OGT inhibitors by virtual screening. Molecules 27(6): 1996 (DOI: 10.3390/molecules27061996).

Lu, Z., Z. Liu, X. Li, X. Qin, H. Hong, Z. Zhou, R.J. Pieters, J. Shi, Z. Wu. 2022. Nanobody- based bispecific neutralizer for Shiga toxin-producing E. coli. ACS Infect. Dis. 8(2): 321- 329 (DOI: 10.1021/acsinfecdis.1c00456).

Luijkx, Y.M.C.A., A.J. Henselijn, G.P. Bosman, D.A.T. Cramer, K. Giesbers, E.M. van 't Veld, G.J. Boons, A.J.R. Heck, K.R. Reiding, K. Strijbis, T. Wennekes. 2022. Detection of bacterial alpha-L-fucosidases with an ortho-quinone methide-based probe and mapping of the probe-protein adducts. Molecules 27(5): 1615 (DOI: 10.3390/molecules27051615).

Madunic, K., O.A. Mayboroda, T. Zhang, J. Weber, G.J. Boons, H. Morreau, R. van Vlierberghe, T. van Wezel, G.S.M. Lageveen-Kammeijer, M. Wuhrer. 2022. Specific (sialyl-)Lewis core 2 O-glycans differentiate colorectal cancer from healthy colon epithelium. Theranostics 12(10): 4498-4512 (DOI: 10.7150/thno.72818).

Montez de Sousa, I.R., Z. Wang, R. Hu, B. Stahl, Y. Jin, S.R.B.M. Eussen, J. Li. 2022. Dietary intake of Chinese lactating women is associated with the fatty acid profile of their milk. Ann. Nutr. Metab. 78(1): 33-45 (DOI: 10.1159/000520515).

Moya-Alvarez, V., S. Eussen, M. Mank, J.J. Koyembi, Y.T. Nyasenu, G. Ngaya, D. Mad- Bondo, J.B. Kongoma, B. Stahl, P.J. Sansonetti, R. Bourdet-Sicard. 2022. Human milk nutritional composition across lactational stages in Central Africa. Front. Nutr. 9: 1033005 (DOI: 10.3389/fnut.2022.1033005).

Mukherjee, R., V.J. Somovilla, F. Chiodo, S. Bruijns, R.J. Pieters, J. Garssen, Y. van Kooyk, A.D. Kraneveld, J. van Bergenhenegouwen. 2022. Human milk oligosaccharide 2’- fucosyllactose inhibits ligand binding to C-type lectin DC-SIGN but not to langerin. Int. J. Mol. Sci. 23(23): 14745 (DOI: 10.3390/ijms232314745).

Nemanichvili, N., A.J. Berends, I. Tomris, K.N. Barnard, C.R. Parrish, A. Grone, J.M. Rijks, M.H. Verheije, R.P. de Vries. 2022. Influenza D binding properties vary amongst the two major virus clades and wildlife species. Vet. Microbiol. 264: 109298 (DOI: 10.1016/j.vetmic.2021.109298).

Nemanichvili, N., C.M. Spruit, A.J. Berends, A. Grone, J.M. Rijks, M.H. Verheije, R.P. de Vries. 2022. Wild and domestic animals variably display Neu5Ac and Neu5Gc sialic acids. Glycobiology 32(9): 791-802 (DOI: 10.1093/glycob/cwac033).

Nguyen, L., K.A. McCord, D.T. Bui, K.M. Bouwman, E.N. Kitova, M. Elaish, D. Kumawat, G.C. Daskhan, I. Tomris, L. Han, P. Chopra, T.J. Yang, S.D. Willows, A.L. Mason, L.K. Mahal, T.L. Lowary, L.J. West, S.D. Hsu, T. Hobman, S.M. Tompkins, G.J. Boons, R.P. de Vries, M.S. Macauley, J.S. Klassen. 2022. Sialic acid-containing glycolipids mediate binding and viral entry of SARS-CoV-2. Nat. Chem. Biol. 18(1): 81-90 (DOI: 10.1038/s41589-021-00924-1).

Rastall, R.A., M. Diez-Municio, S.D. Forssten, B. Hamaker, A. Meynier, F.J. Moreno, F. Respondek, B. Stahl, K. Venema, M. Wiese. 2022. Structure and function of non-digestible carbohydrates in the gut microbiome. Benef. Microbes 13(2): 95-168 (DOI: 10.3920/BM2021.0090).

Sheikh, M.O., C.J. Capicciotti, L. Liu, J. Praissman, D. Ding, D.G. Mead, M.A. Brindley, T. Willer, K.P. Campbell, K.W. Moremen, L. Wells, G.J. Boons. 2022. Cell surface glycan engineering reveals that matriglycan alone can recapitulate dystroglycan binding and function. Nat. Commun. 13(1): 3617 (DOI: 10.1038/s41467-022-31205-7).

Siziba, L.P., M. Mank, B. Stahl, D. Kurz, J. Gonsalves, B. Blijenberg, D. Rothenbacher, J. Genuneit. 2022. Human milk oligosaccharide profiles and child atopic dermatitis up to 2 years of age: The Ulm SPATZ Health Study. Pediatr. Allergy Immunol. 33(2): e13740 (DOI: 10.1111/pai.13740).

Spruit, C.M., X. Zhu, I. Tomris, M. Rios-Carrasco, A.X. Han, F. Broszeit, R. van der Woude, K.M. Bouwman, M.M.T. Luu, K. Matsuno, Y. Sakoda, C.A. Russell, I.A. Wilson, G.J. Boons, R.P. de Vries. 2022. N-glycolylneuraminic acid binding of avian and equine H7 influenza A viruses. J. Virol. 96(5): e0212021 (DOI: 10.1128/jvi.02120-21).

Sun, L., P. Chopra, G.J. Boons. 2022. Chemoenzymatic synthesis of heparan sulfate oligosaccharides having a domain structure. Angew. Chem. Int. Ed. 61(47): e202211112 (DOI: 10.1002/anie.202211112).

Tomris, I., K.M. Bouwman, Y. Adolfs, D. Noack, R. van der Woude, G. Kerster, S. Herfst, R.W. Sanders, M.J. van Gils, G.J. Boons, B.L. Haagmans, R.J. Pasterkamp, B. Rockx, R.P. de Vries. 2022. Distinct spatial arrangements of ACE2 and TMPRSS2 expression in Syrian hamster lung lobes dictates SARS-CoV-2 infection patterns. PLoS Pathog. 18(3): e1010340 (DOI: 10.1371/journal.ppat.1010340).

Trattnig, N., Z. Li, G.P. Bosman, P. Kosma, G.J. Boons. 2022. Site-specific multi- functionalization of the carrier protein CRM(197) by disulfide rebridging for conjugate vaccine development. ChemBioChem 23(21): e202200408 (DOI: 10.1002/cbic.202200408).

Van der Put, R.M.F., A. Spies, B. Metz, D. Some, R. Scherrers, R. Pieters, M. Danial. 2022. Validation of an FFF-MALS method to characterize the production and functionalization of outer-membrane vesicles for conjugate vaccines. Anal. Chem. 94(35): 12033-12041 (DOI: 10.1021/acs.analchem.2c01590).

Van Stigt, A.H., K. Oude Rengerink, K.W.M. Bloemenkamp, W. de Waal, S.M.P.J. Prevaes, T.M. Le, F. van Wijk, M. Nederend, A.H. Hellinga, C.S. Lammers, G. den Hartog, M.J.C. van Herwijnen, J. Garssen, L.M.J. Knippels, L.M. Verhagen, C.G.M. de Theije, A. Lopez-Rincon, J.H.W. Leusen, B. Van't Land, L. Bont, Prima Initiative Group (Knulst, A.C., C..K. van der Ent, D. van Baarle, M.H.M. Wauben, N.Y. Rots, E.A.M. Sanders, M.J.N.L. Benders, L.A.M.P. Meulenbroek, B. Stahl, A.D. Kraneveld, B.J.M. Buiteman, T. Voogt, B. van der Meij, B. Lerkvaleekul, E. Voogd, C.S. Lammers, T.A. Lalmahomed, I.M. Brus, D.M.M. van Meerwijk, S.I.E. Jepma). 2022. Analysing the protection from respiratory tract infections and allergic diseases early in life by human milk components: the PRIMA birth cohort. BMC Infect. Dis. 22(1): 152 (DOI: 10.1186/s12879-022-07107-w).

Verheyen, S., J. Blatterer, M.R. Speicher, G.S. Bhavani, G.J. Boons, M.B. Ilse, D. Andrae, J. Spross, F.M. Vaz, S.G. Kircher, L. Posch-Pertl, D. Baumgartner, T. Lubke, H. Shah, A. Al Kaissi, K.M. Girisha, B. Plecko. 2022. Novel subtype of mucopolysaccharidosis caused by arylsulfatase K (ARSK) deficiency. J. Med. Genet.: (DOI: 10.1136/jmedgenet-2021- 108061).

Wei, X., W. Du, M. Duca, G. Yu, E. de Vries, C.A.M. de Haan, R.J. Pieters. 2022. Preventing influenza A virus infection by mixed inhibition of neuraminidase and hemagglutinin by divalent inhibitors. J. Med. Chem. 65(10): 7312-7323 (DOI: 10.1021/acs.jmedchem.2c00319).

Wu, J., P. Chopra, G.J. Boons, J. Zaia. 2022. Influence of saccharide modifications on heparin lyase III substrate specificities. Glycobiology 32(3): 208-217 (DOI: 10.1093/glycob/cwab023).

Xu, Y., V.M. Hernandez-Rocamora, J.H. Lorent, R. Cox, X. Wang, X. Bao, M. Stel, G. Vos, R.M. van den Bos, R.J. Pieters, J. Gray, W. Vollmer, E. Breukink. 2022. Metabolic labeling of the bacterial peptidoglycan by functionalized glucosamine. iScience 25(8): 104753 (DOI: 10.1016/j.isci.2022.104753).

Yang, X., J. Kemmink, D.T.S. Rijkers, R.M.J. Liskamp. 2022. Synthesis of a tricyclic hexapeptide –via two consecutive ruthenium-catalyzed macrocyclization steps– with a constrained topology to mimic vancomycin's binding properties toward D-Ala-D-Ala dipeptide. Bioorg. Med. Chem. Lett. 73: 128887 (DOI: 10.1016/j.bmcl.2022.128887).