Publications

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Publications CBDD (from 2016 in alphabetical order)

2021

Arunkumar, G.A., D. Bhavsar, T. Li, S. Strohmeier, V. Chromikova, F. Amanat, M. Bunyatov, P.C. Wilson, A.H. Ellebedy, G.J. Boons, V. Simon, R.P. de Vries, and F. Krammer. 2021. Functionality of the putative surface glycoproteins of the Wuhan spiny eel influenza virus. Nat. Commun. 12(1): 6161 (DOI: 10.1038/s41467-021-26409-2).

Asadpoor, M., Ithakisiou, G., Henricks, P.A.J., Pieters, R.J., Folkerts, G., Braber, S. 2021. Non-Digestible Oligosaccharides and Short Chain Fatty Acids as Therapeutic Targets against Enterotoxin-Producing Bacteria and Their Toxins. Toxins. 13: 175

Asadpoor, M., Ithakisiou, G.N., van Putten, J., Pieters, R.J., Folkerts, G., Braber, S. 2021. Antimicrobial Activities of Alginate and Chitosan Oligosaccharides Against Staphylococcus aureus and Group B Streptococcus. Front. Microbiol. 12: 700605

Asadpoor, M., Varasteh, S., Pieters, R.J., Folkerts, G., Braber, S. 2021. Differential Effects of Oligosaccharides on the Effectiveness of Ampicillin against Escherichia Coli in Vitro. PharmaNutrition. 16: 100264

Balsollier, C., Pieters, R.J., Anderluh, M. 2021. Overview of the Assays to Probe O-Linked β-N-Acetylglucosamine Transferase Binding and Activity. Molecules. 26: 1037.

Bosman, G.P., Oliveira, S., Simons, P.J., Sastre Torano, J., Somsen, G.W., Knippels, L., Haselberg, R., Pieters, R.J., Garssen, J., Knipping, K. 2021. Limited Lactosylation of Beta-Lactoglobulin from Cow's Milk Exerts Strong Influence on Antigenicity and Degranulation of Mast Cells. Nutrients. 13: 2041

Bravi F., Di Maso M., Eussen S.R.B.M., Agostoni C., Salvatori G., Profeti C., Tonetto P., Quitadamo P. A., Kazmierska I., Vacca E., Decarli A., Stahl B., Bertino E., Moro G.E., Ferraroni M. 2021. Dietary Patterns of Breastfeeding Mothers and Human Milk Composition: Data from the Italian MEDIDIET Study. On Behalf Of The Medidiet Working Group. Nutrients. 13(5): 1722 (DOI: 10.3390/nu13051722).

Bouwman, K.M., I. Tomris, H.L. Turner, R. van der Woude, T.M Shamorkina, G.P. Bosman, S. Herfst, B. Rockx, J. Snijder, B.L. Haagmans, A.B. Ward, G.J. Boons, and R.P. de Vries. 2021. Multimerization- and glycosylation-dependent receptor binding of SARS-CoV-2 spike proteins. PLoS Pathog. 17(2): e1009282 (DOI:10.1371/journal.ppat.1009282).

Chia L.W., Mank M., Blijenberg B., Bongers R.S., van Limpt K., Wopereis H., Tims S., Stahl B., Belzer C., Knol J. 2021. Cross-feeding between Bifidobacterium infantis and Anaerostipes caccae on lactose and human milk oligosaccharides. Benef Microbes. 12(1): 69-83 (DOI: 10.3920/BM2020.0005).

Chopra, P., A. Joshi, J. Wu,W. Lu,T. Yadavalli, M.A. Wolfert,D. Shukla,J. Zaia, and G.J. Boons. 2021. 3-O-Sulfation of heparan sulfate modulates protein binding and lyase degradation. Proc. Natl. Acad. Sci. U. S. A. 118(3): e2012935118 (DOI: 10.1073/pnas.2012935118).

Dai, M., W. Du, C. Martínez-Romero, T. Leenders, T. Wennekes, G. F. Rimmelzwaan, F. J. M. van Kuppeveld, R. A. M. Fouchier, A. Garcia-Sastre, E. de Vries, C. A. M. de Haan. 2021. Analysis of the Evolution of Pandemic Influenza A (H1N1) Virus Neuraminidase Reveals Entanglement of Different Phenotypic Characteristics. Mbio. 12(3), e00287-21 2 (DOI: 10.1128/mBio.00287-21).

Di Maso M., Eussen S.R.B.M., Bravi F., Moro G.E., Agostoni C., Tonetto P., Quitadamo P.A., Salvatori G., Profeti C., Kazmierska I., Vacca E., Decarli A., Stahl B., Bertino E., Ferraroni M.J. 2021. Dietary Intake of Breastfeeding Mothers in Developed Countries: A Systematic Review and Results of the MEDIDIET Study. Nutr. 151(11): 3459-3482 (DOI: 10.1093/jn/nxab258).

Dingess K.A., van Dam P., Zhu J., Mank M., Knipping K., Heck A.J.R., Stahl B. 2021. Optimization of a human milk-directed quantitative sIgA ELISA method substantiated by mass spectrometry. Anal. Bioanal. Chem. 413(20): 5037-5049 (DOI: 10.1007/s00216-021-03468-4).

Dingess K.A., Gazi I., van den Toorn H.W.P., Mank M., Stahl B., Reiding K.R., Heck A.J.R. 2021. Monitoring Human Milk beta-Casein Phosphorylation and O-Glycosylation Over Lactation Reveals Distinct Differences between the Proteome and Endogenous Peptidome. Int J Mol Sci. 22(15): 8140 (DOI: 10.3390/ijms22158140).

Eussen S.R.B.M., Mank M., Kottler R., Hoffmann X.K., Behne A., Rapp E., Stahl B., Mearin M.L., Koletzko B. 2021. Presence and Levels of Galactosyllactoses and Other Oligosaccharides in Human Milk and Their Variation during Lactation and According to Maternal Phenotype. Nutrients. 13(7): 2324 (DOI: 10.3390/nu13072324).

Gaide, N., M.N. Lucas, M. Delpont, G. Croville, K.M. Bouwman, A. Papanikolaou, R. van der Woude, I. Gagarinov, G.J. Boons, R.P. de Vries, R. Volmer, A. Teillaud, T. Vergne, C. Bleuart, G, Le Loc'h, M, Delverdier, and J.L. Guérin. 2021. Pathobiology of highly pathogenic H5 avian influenza viruses in naturally infected Galliformes and Anseriformes in France during winter 2015-2016. Vet. Res. Accepted for publication.

Haksar, D., Asadpoor, M., Heise, T., Shi, J., Braber, S., Folkerts, G., Ballell, L., Rodrigues, J., Pieters, R. J. 2021. Fighting Shigella by Blocking Its Disease-Causing Toxin. J. Med. Chem. 64: 6059-6069

Heesterbeek, D. A. C., R. M. Muts,V. P. van Hensbergen,P. de Saint Aulaire,T. Wennekes,B. W. Bardoel,N. M. van Sorge, S. H. M. Rooijakkers. 2021. Outer membrane permeabilization by the membrane attack complex sensitizes Gram-negative bacteria to antimicrobial proteins in serum and phagocytes. PLoS pathogens. 17(1), e1009227 8 (DOI: 10.1371/journal.ppat.1009227).

Heesters B.A., van Megesen K., Tomris I., de Vries R.P., Magri G., Spits H. 2021. Characterization of human FDCs reveals regulation of T cells and antigen presentation to B cells. J Exp Med. 218(10) (DOI: 10.1084/jem.20210790).

Hu R., Eussen S.R.B.M., Sijtsma F.P.C., Papi B., Stahl B., Jin Y., Mank M., Li J., Wang Z. 2021. Maternal dietary patterns are associated with human milk composition in Chinese lactating women. Nutrition. 91-92: 111392 (DOI: 10.1016/j.nut.2021.111392).

Huang, J., P. Chopra, L. Liu, T. Nagy, J. Murray, R.A. Tripp, G.J. Boons, and J.J. Mousa. 2021. Structure, immunogenicity, and conformation-dependent receptor binding of the postfusion human metapneumovirus F protein. J. Virol. 95(18): e00593-21 (DOI: 10.1128/JVI.00593-21).

Jong H., M.M.S.M. Wösten, T. Wennekes. 2021. Sweet impersonators: Molecular mimicry of host glycans by bacteria. Glycobiology (DOI 10.1093/glycob/cwab104).

Karlsson, R., P. Chopra, A. Joshi, Z. Yang, S.Y. Vakhrushev, T. Mandel Clausen, C.D. Painter, G.P. Szekeres, Y.-H. Chen, D.R. Sandoval, L. Hansen, J.D. Esko, K. Pagel, D.P. Dyer, J.E. Turnbull, H. Clausen*, G.J. Boons*, and R.L. Miller*. 2021. Dissecting structure-function of 3-O-sulfated heparin and engineered heparan sulfates. Sci. Adv. Sci. Adv. 7(52): eabl6026 (DOI: 10.1126/sciadv.abl6026).

Kontopodi E., Arslanoglu S., Bernatowicz-Lojko U., Bertino E., Bettinelli M.E., Buffin R., Cassidy T., van Elburg R.M., Gebauer C., Grovslien A., Hettinga K., Ioannou I., Klotz D., Mileusnić-Milenović R., Moro G.E., Picaud J.C., Stahl B., Weaver G., van Goudoever J.B., Wesolowska A. 2021. "Donor milk banking: Improving the future". A survey on the operation of the European donor human milk banks. PLoS One. 16(8):e0256435 (DOI: 10.1371/journal.pone.0256435).

Kontopodi E., Hettinga K., Stahl B., van Goudoever J.B., M van Elburg R. 2021. Testing the effects of processing on donor human Milk: Analytical methods. Food Chem. 373(Pt. A):131413 (DOI: 10.1016/j.foodchem.2021.131413).

Li, Z., Y. Lang, L. Liu, M.I. Bunyatov, A. Isaza Sarmiento, R.J. de Groot, and G.J. Boons. 2021. Synthetic O-acetylated sialosides facilitate functional receptor identification for human respiratory viruses. Nat. Chem. 13(5): 496-503 (DOI: 10.1038/s41557-021-00655-9).

Li, Z., L. Unione, L. Liu, Y. Lang, R.P. de Vries, R.J. de Groot, and G.J. Boons. 2021. Synthetic O-acetylated sialosides and their acetamido-deoxy analogs as probes for coronaviral hemagglutinin-esterase recognition. J. Am. Chem. Soc. In press (DOI: 10.1021/jacs.1c10329).

Liu, L., P. Chopra, X. Li, K.M. Bouwman, S.M Tompkins,M.A. Wolfert, R.P. de Vries, and G.J. Boons. 2021. Heparan sulfate proteoglycans as attachment factor for SARS-CoV-2. ACS Cent. Sci. 7(6): 1009-1018 (DOI: 10.1021/acscentsci.1c00010).

Luijkx, Y.M.C.A., S. Jongkees, K. Strijbis, T. Wennekes. 2021. Development of a 1, 2-difluorofucoside activity-based probe for profiling GH29 fucosidases. Organic & Biomolecular Chemistry. 19(13):2968-2977 (DOI: 10.1039/D1OB00054C).

Martínez-Alarcón, D., Balloy, V., Bouchara, J. P., Pieters, R. J., Varrot, A. 2021. Biochemical and structural studies of target lectin SapL1 from the emerging opportunistic microfungus Scedosporium apiospermum. Sci. Rep. 11: 16109

Meng, X., M.M.S.M. Wösten, G.J. Boons, and T. Wennekes. 2021. Metabolic labeling of legionaminic acid in flagellin glycosylation of Campylobacter jejuni identifies Maf4 as a putative legionaminyl transferase. Angew. Chem. Int. Ed. 60(47): 24811-24816 (DOI: 10.1002/anie.202107181).

Montez de Sousa Í.R., Wang Z., Hu R., Stahl B., Jin Y., Eussen S.R.B.M., Li J. 2021. Dietary Intake of Chinese Lactating Women Is Associated with the Fatty Acid Profile of Their Milk. Ann. Nutr. Metab. Dec 2: 1-13 (DOI: 10.1159/000520515).

Moure, M.J., A. Gimeno, S. Delgado, T. Diercks, G.J. Boons, J. Jimenez-Barbero, and A. Arda. 2021. Selective 13C-labels on repeating glycan oligomers to reveal protein binding epitopes through NMR: polylactosamine binding to galectins. Angew. Chem. Int. Ed. 60(34): 18777-18782 (DOI: 10.1002/anie.202106056).

Nemanichvili N., Berends A.J., Tomris I., Barnard K.N., Parrish C.R., Grone A., Rijks J.M., Verheije M.H., de Vries R.P. 2021. Influenza D binding properties vary amongst the two major virus clades and wildlife species. Vet Microbiol. 264: 109298 (DOI: 10.1016/j.vetmic.2021.10929).

Nemanichvili N., Berends A.J., Wubbolts R.W., Grone A., Rijks J.M., de Vries R.P., Verheije M.H. 2021. Tissue Microarrays to visualize influenza D attachment to host receptors in the respiratory tract of farm animals. Viruses. 13(4) (DOI: 10.3390/v13040586).

Nguyen, L., K.A. McCord, D.T. Bui, K.M. Bouwman, E.N. Kitova, M. Elaish, D. Kumawat, G.C. Daskhan, I. Tomris, L. Han, P. Chopra, T.-J. Yang, S.D. Willows, A.L. Mason, L.K. Mahal, T.L. Lowary, L.J. West, S.D. Hsu, T. Hobman, S.M. Tompkins, G.J. Boons, R.P. de Vries, M.S. Macauley, and J.S. Klassen. 2022. Sialic acid-dependent binding and viral entry of SARS-CoV-2. Nat. Chem. Biol. 18(1): 81-90 (DOI: 10.1038/s41589-021-00924-1).

Sadelhoff van J.H.J., Siziba L.P., Buchenauer L., Mank M., Wiertsema S.P., Hogenkamp A., Stahl B., Garssen J., Rothenbacher D., Genuneit J. 2021. Free and Total Amino Acids in Human Milk in Relation to Maternal and Infant Characteristics and Infant Health Outcomes: The Ulm SPATZ Health Study. Nutrients. 13(6):2009 (DOI: 10.3390/nu13062009).

Sastre Toraño, J., O. Aizpurua-Olaizola, N. Wei, T. Li, L. Unione, G. Jiménez-Osés, F. Corzana, V.J. Somovilla, J.M. Falcon-Perez, and G.J. Boons. 2021. Identification of isomeric N-glycans by conformer distribution fingerprinting using ion mobility-mass spectrometry. Chem. Eur. J. 26(6): 2149-2154 (DOI: 10.1002/chem.202004522).

Schuurmans, C.C.L., A.J. Brouwer, J.A.W. Jong, G.J.P.H. Boons, W.E. Hennink, and T. Vermonden. 2021. Hydrolytic (in)stability of methacrylate esters in covalently cross-linked hydrogels based on chondroitin sulfate and hyaluronic acid methacrylate. ACS Omega 6(40): 26302-26310 (DOI: 10.1021/acsomega.1c03395).

Sewgobind, N.V., Albers, S., Pieters, R.J. 2021. Functions and Inhibition of Galectin-7, an Emerging Target in Cellular Pathophysiology. Biomolecules. 11:1720

Shi, J., Sharif,  S., Balsollier, C., Ruijtenbeek, R., Pieters, R. J., Jongkees, S. A. K. 2021. C‐terminal tag location hampers in vitro profiling of OGT peptide substrates by mRNA display. ChemBioChem. 22:666-671

Siziba L.P., Lorenz L., Brenner H., Carr P., Stahl B., Mank M., Marosvölgyi T., Decsi T., Szabó É., Rothenbacher D., Genuneit J. 2021. Changes in human milk fatty acid composition and maternal lifestyle-related factors over a decade: a comparison between the two Ulm Birth Cohort Studies. Br J Nutr. 126(2): 228-235 (DOI: 10.1017/S0007114520004006).

Siziba L.P., Mank M., Stahl B., Kurz D., Gonsalves J., Blijenberg B., Rothenbacher D., Genuneit J. 2021. Associations of Human Milk Oligosaccharides With Otitis Media and Lower and Upper Respiratory Tract Infections up to 2 Years: The Ulm SPATZ Health Study. Front Nutr. 8: 761129 (DOI: 10.3389/fnut.2021.761129).

Siziba L.P, Mank M., Stahl B., Gonsalves J., Blijenberg B., Rothenbacher D., Genuneit J. 2021. Human Milk Oligosaccharide Profiles over 12 Months of Lactation: The Ulm SPATZ Health Study. Nutrients. 13(6): 1973 (DOI: 10.3390/nu13061973).

Spruit, C.M., N. Nemanichvili, M. Okamatsu, H. Takematsu, H., G.J. Boons, and R.P. de Vries. 2021. N-glycolylneuraminic acid in animal models for human influenza A virus. Viruses 15(5): 815 (DOI: 10.3390/v13050815).

Spruit, C.M., X. Zhu, I. Tomris, M. Rios Carrasco, A.X. Han, F. Broszeit, R. van der Woude, K.M. Bouwman, M.M.T. Luu, K. Matsuno, Y. Sakoda, C.A. Russell, I.A. Wilson, G.J. Boons, and R.P. de Vries. 2021. N-glycolylneuraminic acid binding of avian and equine H7 influenza A viruses. J. Vir. Accepted for publication.

Srivastava, A.D., L. Unione, M. Bunyatov, I.A. Gagarinov, S. Delgado, N.G.A. Abrescia, A. Ardá, and G.J. Boons. 2021. Chemoenzymatic synthesis of complex N-glycans of the parasite S. mansoni to examine the importance of epitope presentation on DC-SIGN recognition. Angew. Chem. Int. Ed. 60(35): 19287-19296 (DOI: 10.1002/anie.202105647).

Su, X., Ramírez-Escudero, M., Sun, F., van den Dikkenberg, J.B., van Steenbergen, M.J., Pieters, R.J., Janssen, B.J.C., van Hasselt, P.M., Hennink, W.E., van Nostrum, C.F. 2021. Internalization and Transport of PEGylated Lipid-Based Mixed Micelles across Caco-2 Cells Mediated by Scavenger Receptor B1. Pharmaceutics. 13: 2022

Tas R.P., V. Sampaio‐Pinto, T. Wennekes, L.W. van Laake, I.K. Voets. 2021. From the freezer to the clinic: Antifreeze proteins in the preservation of cells, tissues, and organs. EMBO reports. 22(3), e52162 2 (DOI: 10.15252/embr.202052162).

Toutounchi N.S., Braber S., Hogenkamp A., Varasteh S., Cai Y., Wehkamp T., Tims S., Leusink-Muis T., van Ark I., Wiertsema S., Stahl B., Kraneveld A.D., Garssen J., Folkerts G., Van't Land B. 2021. Human Milk Oligosaccharide 3'-GL Improves Influenza-Specific Vaccination Responsiveness and Immunity after Deoxynivalenol Exposure in Preclinical Models. Nutrients. 13(9): 3190 (DOI: 10.3390/nu13093190).

Verheyen S, J. Blatterer J, M.R. Speicher, G.S. Bhavani, G.J. Boons, M.B. Ilse, D. Andrae, J. Sproß, F.M. Vaz, S.G. Kircher, L. Posch-Pertl, D. Baumgartner, T. Lübke, H. Shah, A. Al Kaissi, K.M. Girisha, and B. Plecko. 2021. Novel subtype of mucopolysaccharidosis caused by arylsulfatase K (ARSK) deficiency. J. Med. Gen. In press (DOI: 10.1136/jmedgenet-2021-108061).

Wei, X., Pieters, R. J. 2021. Multivalency Effects in Neuraminidase Inhibitor Design for Influenza Virus. Arkivoc. 4:297-312

Weiss, M., Loi, E. M., Sterle, M., Balsollier, C., Tomašič, T., Pieters, R. J., Gobec, M., Anderluh, M. 2021. New Quinolinone O-GlcNAc Transferase Inhibitors Based on Fragment Growth. Front. Chem. 9:666122

Wu, J., P. Chopra, G.J. Boons, and J. Zaia.. 2021. Influence of saccharide modifications on heparin lyase III substrate specificities. Glycobiology. In press (DOI: 10.1093/ glycob/cwab023).

Zaree P., Sastre Torano, J., de Haan, C. A. M., Scheltema, R. A., Barendregt, A., Thijssen, V., Yu, G., Flesch, F., Pieters, R. J. 2021. The assessment of Pseudomonas aeruginosa lectin LecA binding characteristics of divalent galactosides using multiple techniques. Glycobiology. 31:1490-1499

Zhu J., Dingess K.A., Mank M., Stahl B., Heck A.J.R. 2021. Personalized Profiling Reveals Donor- and Lactation-Specific Trends in the Human Milk Proteome and Peptidome. J. Nutr. 151(4):826-839 (DOI: 10.1093/jn/nxaa445).